Wall clock time and date at job start Mon Mar 30 2020 06:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00177 * 2 1 4 4 H 1.48503 * 109.46978 * 269.99961 * 3 2 1 5 5 H 1.48494 * 109.47008 * 29.99976 * 3 2 1 6 6 H 1.48503 * 109.47122 * 150.00203 * 3 2 1 7 7 C 1.37884 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99886 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99890 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46906 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47092 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47245 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47141 * 179.97438 * 12 11 10 14 14 C 1.35656 * 117.00084 * 180.02562 * 13 12 11 15 15 C 1.38714 * 120.14894 * 359.97411 * 14 13 12 16 16 C 1.38051 * 120.08468 * 180.02562 * 15 14 13 17 17 C 1.38555 * 120.38906 * 0.02562 * 16 15 14 18 18 C 1.37786 * 120.30047 * 359.97438 * 17 16 15 19 19 C 1.39705 * 119.90585 * 0.02562 * 18 17 16 20 20 C 1.47544 * 120.19020 * 179.97438 * 19 18 17 21 21 N 1.34783 * 119.99517 * 359.97438 * 20 19 18 22 22 O 1.21581 * 119.99935 * 179.97438 * 20 19 18 23 23 H 0.96996 * 119.99447 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46967 * 60.00400 * 9 7 2 25 25 H 1.08996 * 109.47117 * 299.99977 * 9 7 2 26 26 H 1.09003 * 109.46852 * 60.00488 * 10 9 7 27 27 H 1.08996 * 109.47343 * 299.99997 * 10 9 7 28 28 H 1.08999 * 109.47100 * 59.99662 * 11 10 9 29 29 H 1.09010 * 109.46698 * 300.00325 * 11 10 9 30 30 H 1.09003 * 109.47097 * 60.00090 * 12 11 10 31 31 H 1.09001 * 109.47366 * 299.99889 * 12 11 10 32 32 H 1.07996 * 119.95854 * 0.02699 * 15 14 13 33 33 H 1.07997 * 119.80544 * 180.27727 * 16 15 14 34 34 H 1.07998 * 119.84739 * 179.97438 * 17 16 15 35 35 H 1.07996 * 120.04310 * 180.02562 * 18 17 16 36 36 H 0.96998 * 120.00167 * 0.02562 * 21 20 19 37 37 H 0.97000 * 119.99219 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4802 -4.9872 0.0020 12 6 2.4743 -6.1501 0.0024 13 8 1.7598 -7.3876 0.0035 14 6 2.4986 -8.5253 0.0045 15 6 3.8840 -8.4564 0.0039 16 6 4.6345 -9.6151 0.0044 17 6 4.0125 -10.8531 0.0050 18 6 2.6374 -10.9402 0.0056 19 6 1.8657 -9.7756 0.0051 20 6 0.3928 -9.8615 0.0052 21 7 -0.2119 -11.0661 0.0052 22 8 -0.2754 -8.8458 0.0052 23 1 -0.4849 0.8401 -0.0004 24 1 0.6240 -2.5575 -0.8881 25 1 0.6247 -2.5563 0.8919 26 1 2.8725 -3.6040 0.8910 27 1 2.8712 -3.6048 -0.8890 28 1 0.8531 -5.0450 -0.8877 29 1 0.8538 -5.0447 0.8923 30 1 3.1010 -6.0920 0.8923 31 1 3.1010 -6.0927 -0.8877 32 1 4.3762 -7.4951 0.0031 33 1 5.7129 -9.5561 0.0085 34 1 4.6082 -11.7540 0.0050 35 1 2.1568 -11.9073 0.0065 36 1 0.3212 -11.8764 0.0055 37 1 -1.1803 -11.1225 0.0049 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385294720.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:33 Heat of formation + Delta-G solvation = -96.785667 kcal Electronic energy + Delta-G solvation = -18711.921596 eV Core-core repulsion = 15645.643932 eV Total energy + Delta-G solvation = -3066.277664 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.53372 -39.86049 -38.42033 -36.52595 -34.77773 -34.42977 -32.03828 -31.30580 -30.20741 -26.92319 -25.13430 -24.19867 -22.56314 -22.07624 -21.38801 -19.56069 -18.45249 -18.21154 -17.79228 -17.35732 -16.65736 -16.38698 -15.99650 -15.92124 -15.57131 -15.35853 -14.66395 -14.44450 -14.31333 -13.84551 -13.70256 -13.15104 -13.03478 -12.69644 -12.67335 -12.46787 -12.34538 -11.97368 -11.83644 -11.43439 -11.38012 -11.14962 -10.98888 -10.67429 -10.57144 -10.04632 -9.22525 -8.20720 -6.33138 -0.12328 0.43102 1.39478 1.41987 1.53109 1.92293 2.17251 2.41357 2.59763 2.87887 3.12142 3.76569 3.82225 3.91817 3.97214 4.13255 4.22069 4.30412 4.44076 4.48421 4.49609 4.66864 4.74849 4.87048 5.05405 5.18756 5.21108 5.23496 5.34482 5.48423 5.50396 5.70958 5.80556 5.83456 5.91957 6.21640 6.37725 6.54775 6.84419 7.36458 7.39535 8.91721 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.033706 B = 0.003207 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.521246 B = 8728.310213 C = 9527.780103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.021 3.979 10 C -0.090 4.090 11 C -0.109 4.109 12 C 0.063 3.937 13 O -0.313 6.313 14 C 0.154 3.846 15 C -0.233 4.233 16 C -0.046 4.046 17 C -0.165 4.165 18 C -0.039 4.039 19 C -0.209 4.209 20 C 0.553 3.447 21 N -0.832 5.832 22 O -0.581 6.581 23 H 0.264 0.736 24 H -0.012 1.012 25 H -0.012 1.012 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.142 0.858 33 H 0.160 0.840 34 H 0.168 0.832 35 H 0.170 0.830 36 H 0.416 0.584 37 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.577 -28.639 0.014 30.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.795 3.205 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.017 4.017 10 C -0.128 4.128 11 C -0.146 4.146 12 C -0.011 4.011 13 O -0.226 6.226 14 C 0.106 3.894 15 C -0.251 4.251 16 C -0.064 4.064 17 C -0.183 4.183 18 C -0.057 4.057 19 C -0.213 4.213 20 C 0.340 3.660 21 N -0.398 5.398 22 O -0.461 6.461 23 H 0.072 0.928 24 H 0.006 0.994 25 H 0.006 0.994 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.159 0.841 33 H 0.178 0.822 34 H 0.185 0.815 35 H 0.187 0.813 36 H 0.249 0.751 37 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 9.945 -27.771 0.019 29.498 hybrid contribution -0.361 0.991 -0.010 1.055 sum 9.584 -26.779 0.009 28.443 Atomic orbital electron populations 1.70130 1.08068 1.27842 1.51689 1.26099 0.95806 1.03765 0.94669 0.85359 0.78648 0.77938 0.78558 1.19656 1.20835 1.18332 1.21721 0.93750 0.92120 1.50556 0.91570 1.19029 0.94552 0.93418 0.94657 1.21338 0.97977 0.91900 1.01555 1.21458 0.98220 0.93018 1.01938 1.22967 0.94895 0.80744 1.02536 1.86318 1.36273 1.13215 1.86747 1.19614 0.91129 0.86198 0.92444 1.21554 0.91399 1.02002 1.10194 1.21608 1.01580 0.91275 0.91952 1.21463 0.94201 0.98993 1.03631 1.21535 0.94439 0.96466 0.93307 1.19512 0.92880 0.92633 1.16320 1.18445 0.88266 0.83903 0.75407 1.43511 1.11792 1.07327 1.77163 1.90894 1.67094 1.36948 1.51188 0.92770 0.99378 0.99360 0.91891 0.91880 0.92869 0.92879 0.90429 0.90416 0.84076 0.82222 0.81455 0.81314 0.75084 0.75850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.55 13.29 21.45 0.28 -59.27 16 2 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 3 Si 0.97 45.31 29.54 68.60 2.03 47.34 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.54 -32.02 9.11 25.60 0.23 -31.79 16 8 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 9 C 0.02 1.15 4.97 29.85 0.15 1.30 16 10 C -0.09 -3.87 5.15 30.60 0.16 -3.71 16 11 C -0.11 -4.28 5.58 30.59 0.17 -4.11 16 12 C 0.06 2.00 4.74 71.98 0.34 2.34 16 13 O -0.31 -11.23 8.21 -68.79 -0.56 -11.79 16 14 C 0.15 4.37 6.70 22.84 0.15 4.52 16 15 C -0.23 -4.89 9.03 22.34 0.20 -4.69 16 16 C -0.05 -0.63 10.03 22.30 0.22 -0.40 16 17 C -0.17 -1.73 10.02 22.24 0.22 -1.51 16 18 C -0.04 -0.51 9.53 22.52 0.21 -0.30 16 19 C -0.21 -5.01 5.89 -20.01 -0.12 -5.12 16 20 C 0.55 15.08 8.04 86.70 0.70 15.78 16 21 N -0.83 -12.31 8.82 -175.81 -1.55 -13.86 16 22 O -0.58 -23.11 16.00 16.95 0.27 -22.84 16 23 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 24 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 25 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 26 H 0.06 2.52 8.14 -2.39 -0.02 2.51 16 27 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 30 H 0.08 2.15 7.66 -2.39 -0.02 2.13 16 31 H 0.08 2.15 7.66 -2.39 -0.02 2.13 16 32 H 0.14 2.71 6.30 -2.91 -0.02 2.69 16 33 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 34 H 0.17 0.50 8.06 -2.91 -0.02 0.48 16 35 H 0.17 0.68 6.40 -2.91 -0.02 0.66 16 36 H 0.42 2.48 6.86 -92.71 -0.64 1.85 16 37 H 0.41 5.36 8.93 -92.71 -0.83 4.53 16 Total: -1.00 -83.55 316.27 3.20 -80.35 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -0.37 Total: 7.65 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: 3.11 Total: -27.58 kcal Atomic # 7 Polarization: -71.86 SS G_CDS: -1.27 Total: -73.13 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -0.29 Total: -34.63 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -83.55 3.20 -80.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385294720.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.440 kcal (2) G-P(sol) polarization free energy of solvation -83.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds