Wall clock time and date at job start Mon Mar 30 2020 06:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99930 * 2 1 4 4 H 1.48499 * 109.47009 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46915 * 300.00277 * 3 2 1 6 6 H 1.48499 * 109.46842 * 59.99948 * 3 2 1 7 7 C 1.37881 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99886 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99843 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.46864 * 179.97438 * 9 7 2 11 11 C 1.42893 * 113.99845 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47027 * 180.02562 * 11 10 9 13 13 N 1.46503 * 109.47157 * 65.00418 * 12 11 10 14 14 C 1.39669 * 120.00278 * 179.97438 * 13 12 11 15 15 C 1.38935 * 120.06028 * 0.02562 * 14 13 12 16 16 C 1.38147 * 119.97140 * 180.02562 * 15 14 13 17 17 C 1.38052 * 120.01441 * 359.97170 * 16 15 14 18 18 C 1.38659 * 120.15822 * 0.02562 * 17 16 15 19 19 C 1.37845 * 120.11518 * 0.02562 * 18 17 16 20 20 C 1.51098 * 107.26793 * 179.97438 * 18 17 16 21 21 O 1.43936 * 105.95175 * 17.69625 * 20 18 17 22 22 C 1.43931 * 104.96431 * 331.52699 * 21 20 18 23 23 H 0.96997 * 120.00408 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46901 * 60.00779 * 9 7 2 25 25 H 1.08994 * 109.46936 * 299.99814 * 9 7 2 26 26 H 1.08998 * 109.47174 * 60.00727 * 11 10 9 27 27 H 1.09000 * 109.47904 * 300.00083 * 11 10 9 28 28 H 1.08997 * 109.47319 * 305.00338 * 12 11 10 29 29 H 1.09003 * 109.47022 * 184.99854 * 12 11 10 30 30 H 0.97001 * 120.00072 * 0.02562 * 13 12 11 31 31 H 1.07999 * 120.01673 * 359.97438 * 15 14 13 32 32 H 1.07995 * 119.99962 * 179.97438 * 16 15 14 33 33 H 1.08002 * 120.07067 * 179.72650 * 19 18 17 34 34 H 1.08999 * 110.16012 * 136.82248 * 20 18 17 35 35 H 1.09001 * 110.15359 * 258.58186 * 20 18 17 36 36 H 1.08996 * 110.15760 * 147.60329 * 22 21 20 37 37 H 1.08999 * 110.15347 * 269.28878 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0017 11 6 1.5651 -4.8754 -0.0013 12 6 2.6481 -5.9561 -0.0020 13 7 3.4070 -5.8879 1.2493 14 6 4.4549 -6.7819 1.4802 15 6 4.7792 -7.7360 0.5238 16 6 5.8158 -8.6197 0.7543 17 6 6.5295 -8.5543 1.9342 18 6 6.2085 -7.6032 2.8908 19 6 5.1746 -6.7192 2.6674 20 6 7.1610 -7.7920 4.0484 21 8 8.2579 -8.5699 3.5352 22 6 7.6898 -9.3583 2.4735 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8897 26 1 0.9441 -4.9823 -0.8906 27 1 0.9459 -4.9827 0.8894 28 1 3.3211 -5.7956 -0.8442 29 1 2.1821 -6.9374 -0.0912 30 1 3.1811 -5.2224 1.9179 31 1 4.2207 -7.7875 -0.3991 32 1 6.0680 -9.3618 0.0114 33 1 4.9223 -5.9816 3.4148 34 1 7.5192 -6.8250 4.4017 35 1 6.6665 -8.3286 4.8580 36 1 8.4296 -9.5220 1.6900 37 1 7.3375 -10.3137 2.8623 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385408212.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:51 Heat of formation + Delta-G solvation = -62.185759 kcal Electronic energy + Delta-G solvation = -18650.636786 eV Core-core repulsion = 15585.859487 eV Total energy + Delta-G solvation = -3064.777299 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.62824 -38.27913 -36.96129 -34.89366 -32.79783 -31.59425 -30.76894 -28.79660 -27.49280 -26.54421 -24.38545 -22.71685 -22.31243 -21.60593 -20.56424 -17.24094 -16.80296 -16.45899 -16.34617 -15.87400 -15.85115 -15.26319 -14.61104 -14.42826 -14.12664 -13.70476 -13.66484 -13.33550 -13.04289 -12.83411 -12.65045 -12.23930 -11.89794 -11.65316 -11.42092 -10.96274 -10.89758 -10.85785 -10.71877 -10.34292 -10.11821 -9.64725 -9.19344 -8.97053 -8.81443 -8.30617 -7.28988 -6.18948 -4.21191 1.32291 1.50261 3.24464 3.31342 3.37733 3.46311 3.74719 3.83827 4.26677 4.31127 4.61598 4.69569 4.91430 5.17882 5.18713 5.20668 5.23696 5.27438 5.29767 5.44697 5.47397 5.61644 5.70892 5.87629 5.88539 5.95864 6.07243 6.25778 6.28629 6.34041 6.65897 6.78755 6.96155 7.30092 7.39360 7.71005 7.83674 8.04420 8.43003 8.91667 9.44278 10.92496 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.028767 B = 0.003269 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.113737 B = 8563.971709 C = 9218.882560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.517 4.517 8 H 0.067 0.933 9 C 0.195 3.805 10 O -0.393 6.393 11 C 0.049 3.951 12 C 0.128 3.872 13 N -0.731 5.731 14 C 0.234 3.766 15 C -0.201 4.201 16 C -0.042 4.042 17 C -0.208 4.208 18 C -0.084 4.084 19 C -0.173 4.173 20 C 0.091 3.909 21 O -0.366 6.366 22 C 0.101 3.899 23 H 0.264 0.736 24 H 0.006 0.994 25 H 0.006 0.994 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.407 0.593 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.075 -18.340 4.069 20.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.313 6.313 11 C -0.029 4.029 12 C 0.004 3.996 13 N -0.358 5.358 14 C 0.128 3.872 15 C -0.224 4.224 16 C -0.061 4.061 17 C -0.210 4.210 18 C -0.085 4.085 19 C -0.196 4.196 20 C 0.015 3.985 21 O -0.285 6.285 22 C 0.025 3.975 23 H 0.074 0.926 24 H 0.024 0.976 25 H 0.024 0.976 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.243 0.757 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.213 -18.180 3.943 20.760 hybrid contribution -0.451 1.203 0.082 1.288 sum 8.762 -16.977 4.025 19.524 Atomic orbital electron populations 1.69962 1.06126 1.27193 1.50424 1.24956 0.94990 0.99518 0.95013 0.86274 0.80041 0.82472 0.77694 1.19444 1.20766 1.20779 1.21079 0.94108 0.89274 1.51010 0.91480 1.20236 0.88702 0.83501 0.95487 1.87901 1.35477 1.12744 1.95218 1.22471 0.94241 0.85887 1.00311 1.21444 0.93732 0.97497 0.86932 1.44771 1.33932 1.36196 1.20922 1.17770 0.87466 0.89136 0.92817 1.20581 1.02178 0.99210 1.00393 1.20040 0.93679 0.97485 0.94864 1.20654 1.02047 1.01221 0.97095 1.20642 0.96109 0.95635 0.96081 1.19744 0.99008 1.02843 0.97985 1.21728 0.86284 0.96708 0.93799 1.89043 1.31097 1.57704 1.50622 1.21561 0.93268 0.93138 0.89520 0.92618 0.97588 0.97646 0.92739 0.93817 0.91445 0.91482 0.75683 0.85627 0.86142 0.85864 0.88596 0.90661 0.89293 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.43 13.29 55.43 0.74 -25.70 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.93 9.43 -34.44 -0.32 -15.25 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.19 5.16 5.69 36.01 0.20 5.36 16 10 O -0.39 -8.94 10.27 -35.23 -0.36 -9.30 16 11 C 0.05 0.82 6.07 37.16 0.23 1.04 16 12 C 0.13 1.75 5.30 -4.04 -0.02 1.73 16 13 N -0.73 -10.33 5.68 -58.61 -0.33 -10.66 16 14 C 0.23 3.18 6.65 -83.76 -0.56 2.62 16 15 C -0.20 -2.47 9.31 -39.36 -0.37 -2.84 16 16 C -0.04 -0.47 10.03 -39.68 -0.40 -0.87 16 17 C -0.21 -2.46 6.32 -104.33 -0.66 -3.12 16 18 C -0.08 -1.03 6.32 -104.42 -0.66 -1.69 16 19 C -0.17 -2.24 9.89 -39.45 -0.39 -2.63 16 20 C 0.09 0.97 7.63 36.20 0.28 1.24 16 21 O -0.37 -4.40 11.72 -35.23 -0.41 -4.81 16 22 C 0.10 1.03 7.63 36.21 0.28 1.31 16 23 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 25 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.95 7.95 -51.93 -0.41 0.54 16 29 H 0.07 0.75 7.95 -51.93 -0.41 0.33 16 30 H 0.41 5.96 8.49 -40.82 -0.35 5.61 16 31 H 0.13 1.38 6.73 -52.49 -0.35 1.02 16 32 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 316.05 15.07 4.76 4.76 Total: -1.00 -31.52 316.05 -8.42 -39.94 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.30 Total: 0.78 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -2.49 Total: -11.58 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.40 Total: -36.36 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.77 Total: -14.11 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.52 -8.42 -39.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385408212.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.244 kcal (2) G-P(sol) polarization free energy of solvation -31.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds