Wall clock time and date at job start Mon Mar 30 2020 06:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99930 * 2 1 4 4 H 1.48499 * 109.47009 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46915 * 300.00277 * 3 2 1 6 6 H 1.48499 * 109.46842 * 59.99948 * 3 2 1 7 7 C 1.37881 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99886 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99843 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.46864 * 179.97438 * 9 7 2 11 11 C 1.42893 * 113.99845 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47027 * 180.02562 * 11 10 9 13 13 N 1.46503 * 109.47157 * 65.00418 * 12 11 10 14 14 C 1.39669 * 120.00278 * 179.97438 * 13 12 11 15 15 C 1.38935 * 120.06028 * 0.02562 * 14 13 12 16 16 C 1.38147 * 119.97140 * 180.02562 * 15 14 13 17 17 C 1.38052 * 120.01441 * 359.97170 * 16 15 14 18 18 C 1.38659 * 120.15822 * 0.02562 * 17 16 15 19 19 C 1.37845 * 120.11518 * 0.02562 * 18 17 16 20 20 C 1.51098 * 107.26793 * 179.97438 * 18 17 16 21 21 O 1.43936 * 105.95175 * 17.69625 * 20 18 17 22 22 C 1.43931 * 104.96431 * 331.52699 * 21 20 18 23 23 H 0.96997 * 120.00408 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46901 * 60.00779 * 9 7 2 25 25 H 1.08994 * 109.46936 * 299.99814 * 9 7 2 26 26 H 1.08998 * 109.47174 * 60.00727 * 11 10 9 27 27 H 1.09000 * 109.47904 * 300.00083 * 11 10 9 28 28 H 1.08997 * 109.47319 * 305.00338 * 12 11 10 29 29 H 1.09003 * 109.47022 * 184.99854 * 12 11 10 30 30 H 0.97001 * 120.00072 * 0.02562 * 13 12 11 31 31 H 1.07999 * 120.01673 * 359.97438 * 15 14 13 32 32 H 1.07995 * 119.99962 * 179.97438 * 16 15 14 33 33 H 1.08002 * 120.07067 * 179.72650 * 19 18 17 34 34 H 1.08999 * 110.16012 * 136.82248 * 20 18 17 35 35 H 1.09001 * 110.15359 * 258.58186 * 20 18 17 36 36 H 1.08996 * 110.15760 * 147.60329 * 22 21 20 37 37 H 1.08999 * 110.15347 * 269.28878 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0017 11 6 1.5651 -4.8754 -0.0013 12 6 2.6481 -5.9561 -0.0020 13 7 3.4070 -5.8879 1.2493 14 6 4.4549 -6.7819 1.4802 15 6 4.7792 -7.7360 0.5238 16 6 5.8158 -8.6197 0.7543 17 6 6.5295 -8.5543 1.9342 18 6 6.2085 -7.6032 2.8908 19 6 5.1746 -6.7192 2.6674 20 6 7.1610 -7.7920 4.0484 21 8 8.2579 -8.5699 3.5352 22 6 7.6898 -9.3583 2.4735 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8897 26 1 0.9441 -4.9823 -0.8906 27 1 0.9459 -4.9827 0.8894 28 1 3.3211 -5.7956 -0.8442 29 1 2.1821 -6.9374 -0.0912 30 1 3.1811 -5.2224 1.9179 31 1 4.2207 -7.7875 -0.3991 32 1 6.0680 -9.3618 0.0114 33 1 4.9223 -5.9816 3.4148 34 1 7.5192 -6.8250 4.4017 35 1 6.6665 -8.3286 4.8580 36 1 8.4296 -9.5220 1.6900 37 1 7.3375 -10.3137 2.8623 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385408212.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:50 Heat of formation + Delta-G solvation = -83.057192 kcal Electronic energy + Delta-G solvation = -18651.541839 eV Core-core repulsion = 15585.859487 eV Total energy + Delta-G solvation = -3065.682353 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.50638 -39.37631 -38.45242 -36.06055 -34.88397 -32.51531 -31.89401 -29.98735 -29.04507 -27.85805 -25.26819 -24.59259 -23.71799 -22.51500 -21.55293 -18.74429 -18.15188 -17.67375 -17.53654 -17.22386 -16.83336 -16.60261 -16.39838 -15.56144 -15.25839 -15.07419 -14.90258 -14.45368 -14.17595 -13.83114 -13.71760 -13.53965 -13.28541 -13.06494 -12.85144 -12.67803 -12.42791 -12.39850 -11.96839 -11.76713 -11.35126 -11.23460 -10.92788 -10.52778 -10.29575 -9.72399 -8.35906 -8.28300 -6.47944 0.39814 0.57056 1.38496 1.39008 1.53816 2.31459 2.42191 2.81825 2.98397 3.03720 3.10593 3.43465 3.78522 4.00736 4.06684 4.17877 4.37260 4.38316 4.47444 4.53415 4.55202 4.63789 4.67254 4.73729 4.82169 4.86822 4.90117 5.05907 5.14542 5.32248 5.41302 5.42955 5.51487 5.78050 5.89631 5.92262 6.37957 6.48965 6.73550 6.77682 7.24213 8.76378 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.028767 B = 0.003269 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.113737 B = 8563.971709 C = 9218.882560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.981 3.019 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.210 3.790 10 O -0.408 6.408 11 C 0.041 3.959 12 C 0.139 3.861 13 N -0.741 5.741 14 C 0.215 3.785 15 C -0.208 4.208 16 C -0.043 4.043 17 C -0.215 4.215 18 C -0.098 4.098 19 C -0.187 4.187 20 C 0.090 3.910 21 O -0.384 6.384 22 C 0.099 3.901 23 H 0.271 0.729 24 H -0.011 1.011 25 H -0.011 1.011 26 H 0.066 0.934 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.401 0.599 31 H 0.138 0.862 32 H 0.149 0.851 33 H 0.125 0.875 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.125 -19.061 3.900 21.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.587 4.587 8 H 0.077 0.923 9 C 0.135 3.865 10 O -0.328 6.328 11 C -0.036 4.036 12 C 0.015 3.985 13 N -0.369 5.369 14 C 0.110 3.890 15 C -0.230 4.230 16 C -0.062 4.062 17 C -0.217 4.217 18 C -0.099 4.099 19 C -0.210 4.210 20 C 0.014 3.986 21 O -0.303 6.303 22 C 0.024 3.976 23 H 0.080 0.920 24 H 0.007 0.993 25 H 0.006 0.994 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.236 0.764 31 H 0.156 0.844 32 H 0.167 0.833 33 H 0.143 0.857 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.122 0.878 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.271 -18.941 3.772 21.875 hybrid contribution -0.771 1.303 0.144 1.521 sum 9.500 -17.638 3.917 20.413 Atomic orbital electron populations 1.70055 1.07653 1.28637 1.50463 1.25921 0.95947 1.03294 0.93927 0.85167 0.78595 0.77510 0.78334 1.19064 1.19610 1.19625 1.21407 0.94007 0.90984 1.52253 0.92282 1.19827 0.88518 0.84470 0.93729 1.87850 1.35400 1.14239 1.95278 1.22796 0.95712 0.83920 1.01152 1.21406 0.92820 0.97562 0.86738 1.44783 1.34645 1.36587 1.20868 1.17971 0.87733 0.89697 0.93587 1.20833 1.02638 0.99012 1.00567 1.20368 0.92922 0.97598 0.95273 1.21024 1.02392 1.01155 0.97132 1.20918 0.96172 0.95663 0.97108 1.19884 0.99539 1.03377 0.98192 1.21844 0.85832 0.97302 0.93600 1.89020 1.31887 1.58167 1.51227 1.21738 0.93059 0.93251 0.89584 0.91988 0.99325 0.99356 0.91567 0.93223 0.91880 0.88199 0.76431 0.84387 0.83324 0.85682 0.87915 0.88998 0.87793 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.02 13.29 21.45 0.28 -54.73 16 2 C 0.01 0.45 5.46 84.66 0.46 0.91 16 3 Si 0.98 44.06 29.54 68.60 2.03 46.09 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.55 -32.28 9.43 25.60 0.24 -32.04 16 8 H 0.06 3.48 7.81 -2.91 -0.02 3.45 16 9 C 0.21 11.41 5.69 71.24 0.41 11.82 16 10 O -0.41 -18.85 10.27 -148.98 -1.53 -20.38 16 11 C 0.04 1.37 6.07 71.98 0.44 1.81 16 12 C 0.14 3.65 5.30 86.38 0.46 4.11 16 13 N -0.74 -20.76 5.68 -339.34 -1.93 -22.68 16 14 C 0.22 5.71 6.65 38.23 0.25 5.97 16 15 C -0.21 -4.80 9.31 22.42 0.21 -4.59 16 16 C -0.04 -0.88 10.03 22.20 0.22 -0.66 16 17 C -0.21 -4.70 6.32 -19.68 -0.12 -4.82 16 18 C -0.10 -2.32 6.32 -19.73 -0.12 -2.44 16 19 C -0.19 -4.82 9.89 22.35 0.22 -4.60 16 20 C 0.09 1.80 7.63 71.36 0.54 2.35 16 21 O -0.38 -8.60 11.72 -148.98 -1.75 -10.35 16 22 C 0.10 1.80 7.63 71.37 0.54 2.35 16 23 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 24 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 25 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 26 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.06 1.72 7.95 -2.39 -0.02 1.70 16 29 H 0.10 1.99 7.95 -2.39 -0.02 1.97 16 30 H 0.40 11.97 8.49 -92.71 -0.79 11.18 16 31 H 0.14 2.74 6.73 -2.91 -0.02 2.72 16 32 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 33 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 34 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -67.38 316.05 1.14 -66.24 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.28 Total: 15.66 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: 3.75 Total: -19.84 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -1.64 Total: -77.42 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -3.28 Total: -30.73 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -67.38 1.14 -66.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385408212.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.820 kcal (2) G-P(sol) polarization free energy of solvation -67.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds