Wall clock time and date at job start Mon Mar 30 2020 06:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 119.99951 * 2 1 4 4 H 1.48496 * 109.47444 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47241 * 300.00671 * 3 2 1 6 6 H 1.48504 * 109.47180 * 60.00274 * 3 2 1 7 7 C 1.37872 * 120.00225 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00259 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00080 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47582 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47424 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47008 * 180.02562 * 11 10 9 13 13 O 1.45208 * 109.47107 * 179.97438 * 12 11 10 14 14 C 1.34754 * 116.99790 * 180.02562 * 13 12 11 15 15 O 1.21520 * 120.00680 * 0.02562 * 14 13 12 16 16 C 1.47389 * 119.99587 * 180.02562 * 14 13 12 17 17 C 1.39857 * 120.07006 * 180.02562 * 16 14 13 18 18 C 1.37107 * 119.92133 * 180.02562 * 17 16 14 19 19 C 1.39240 * 120.07830 * 359.97438 * 18 17 16 20 20 N 1.39003 * 119.92801 * 179.97438 * 19 18 17 21 21 C 1.39247 * 120.14338 * 0.27439 * 19 18 17 22 22 C 1.37110 * 120.07123 * 359.44873 * 21 19 18 23 23 H 0.97002 * 120.00133 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.46985 * 60.00197 * 9 7 2 25 25 H 1.08996 * 109.47090 * 300.00741 * 9 7 2 26 26 H 1.09005 * 109.46380 * 59.99977 * 10 9 7 27 27 H 1.08998 * 109.46900 * 300.00970 * 10 9 7 28 28 H 1.08994 * 109.47013 * 59.99956 * 11 10 9 29 29 H 1.09004 * 109.46822 * 300.00188 * 11 10 9 30 30 H 1.09002 * 109.47124 * 60.00393 * 12 11 10 31 31 H 1.08996 * 109.47634 * 300.00058 * 12 11 10 32 32 H 1.07996 * 120.03814 * 0.02562 * 17 16 14 33 33 H 1.08004 * 119.96446 * 179.97438 * 18 17 16 34 34 H 0.97001 * 120.00330 * 0.02562 * 20 19 18 35 35 H 0.97005 * 119.99944 * 179.72463 * 20 19 18 36 36 H 1.08001 * 119.95996 * 179.72828 * 21 19 18 37 37 H 1.07999 * 120.03106 * 180.27545 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0005 13 8 1.7486 -7.4075 -0.0005 14 6 2.4826 -8.5376 0.0005 15 8 3.6961 -8.4741 0.0019 16 6 1.8135 -9.8509 0.0000 17 6 2.5738 -11.0247 0.0017 18 6 1.9482 -12.2448 0.0007 19 6 0.5576 -12.3159 -0.0014 20 7 -0.0734 -13.5545 -0.0030 21 6 -0.2023 -11.1491 -0.0083 22 6 0.4170 -9.9258 -0.0016 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 2.8719 -3.6043 0.8895 27 1 2.8720 -3.6043 -0.8904 28 1 0.8540 -5.0446 -0.8913 29 1 0.8533 -5.0451 0.8886 30 1 3.1006 -6.0923 0.8900 31 1 3.1019 -6.0922 -0.8900 32 1 3.6524 -10.9702 0.0038 33 1 2.5346 -13.1517 0.0015 34 1 0.4549 -14.3680 -0.0022 35 1 -1.0421 -13.6053 -0.0004 36 1 -1.2807 -11.2078 -0.0144 37 1 -0.1730 -9.0213 -0.0024 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385847517.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:36 Heat of formation + Delta-G solvation = -87.418737 kcal Electronic energy + Delta-G solvation = -18158.516888 eV Core-core repulsion = 15092.645404 eV Total energy + Delta-G solvation = -3065.871484 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.46474 -39.21832 -36.53308 -34.92470 -34.61273 -32.39385 -31.34661 -29.75167 -28.69291 -25.20137 -23.62199 -23.06315 -21.75973 -20.84547 -20.02206 -18.02777 -17.54243 -17.06480 -16.50796 -16.36921 -16.15283 -14.72285 -14.54791 -14.43272 -14.31307 -13.73730 -13.60853 -13.53017 -12.79032 -12.62476 -12.46819 -11.76588 -11.52340 -11.33477 -11.26412 -11.00827 -10.84419 -10.59233 -10.45560 -10.35226 -10.19311 -9.66742 -9.35541 -9.32457 -9.02968 -8.32684 -8.01348 -5.97606 -3.99765 0.72138 1.16754 2.60149 2.84475 3.33191 3.35336 3.40534 3.45218 3.67326 4.48312 4.51971 4.63896 4.80765 5.09502 5.17508 5.31730 5.33353 5.36963 5.38446 5.69586 5.74712 5.87835 5.92874 6.06295 6.13141 6.26629 6.37985 6.41405 6.67887 6.74612 6.89863 6.95692 7.13460 7.20496 7.70700 7.84521 7.92720 8.02853 8.45224 9.07639 9.64248 11.13809 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.053894 B = 0.002571 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.409199 B =10890.069279 C =11378.426737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.108 4.108 11 C -0.117 4.117 12 C 0.070 3.930 13 O -0.355 6.355 14 C 0.510 3.490 15 O -0.520 6.520 16 C -0.188 4.188 17 C -0.004 4.004 18 C -0.215 4.215 19 C 0.248 3.752 20 N -0.868 5.868 21 C -0.214 4.214 22 C -0.008 4.008 23 H 0.260 0.740 24 H 0.017 0.983 25 H 0.017 0.983 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.136 0.864 33 H 0.128 0.872 34 H 0.401 0.599 35 H 0.401 0.599 36 H 0.128 0.872 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.818 -28.152 0.002 28.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.155 4.155 12 C -0.003 4.003 13 O -0.272 6.272 14 C 0.356 3.644 15 O -0.410 6.410 16 C -0.191 4.191 17 C -0.023 4.023 18 C -0.237 4.237 19 C 0.141 3.859 20 N -0.404 5.404 21 C -0.237 4.237 22 C -0.027 4.027 23 H 0.069 0.931 24 H 0.036 0.964 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.154 0.846 33 H 0.146 0.854 34 H 0.229 0.771 35 H 0.230 0.770 36 H 0.146 0.854 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.599 -27.944 -0.002 27.950 hybrid contribution 0.351 0.662 0.008 0.749 sum -0.248 -27.282 0.006 27.283 Atomic orbital electron populations 1.69976 1.06046 1.26459 1.51049 1.25034 0.94865 0.99290 0.95393 0.86535 0.80133 0.83788 0.77543 1.19738 1.21035 1.21031 1.21309 0.93117 0.91082 1.50309 0.92600 1.19098 0.93955 0.91117 0.97399 1.21591 0.99285 0.92992 1.00696 1.21729 0.98046 0.92556 1.03163 1.23344 0.95338 0.79322 1.02333 1.86532 1.41633 1.15257 1.83766 1.21050 0.85588 0.85104 0.72662 1.90814 1.15063 1.88208 1.46955 1.18917 0.93797 0.90267 1.16120 1.20868 1.00362 0.90229 0.90836 1.20381 0.92219 0.98226 1.12903 1.18071 0.92002 0.86203 0.89672 1.42494 1.09768 1.05027 1.83158 1.20472 0.99797 0.90972 1.12452 1.21154 0.93222 0.98080 0.90293 0.93078 0.96443 0.96453 0.93055 0.93060 0.91279 0.91287 0.91374 0.91367 0.84609 0.85414 0.77097 0.77018 0.85369 0.84203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 11 C -0.12 -2.05 5.59 -26.74 -0.15 -2.20 16 12 C 0.07 1.13 5.48 37.15 0.20 1.33 16 13 O -0.36 -5.54 9.46 -40.64 -0.38 -5.92 16 14 C 0.51 7.77 7.89 34.46 0.27 8.04 16 15 O -0.52 -9.11 16.13 -19.28 -0.31 -9.42 16 16 C -0.19 -2.30 5.88 -104.97 -0.62 -2.92 16 17 C 0.00 -0.04 9.56 -39.39 -0.38 -0.42 16 18 C -0.21 -1.74 9.85 -39.62 -0.39 -2.13 16 19 C 0.25 1.85 6.75 -83.86 -0.57 1.28 16 20 N -0.87 -3.54 9.05 32.41 0.29 -3.24 16 21 C -0.21 -1.77 9.85 -39.62 -0.39 -2.16 16 22 C -0.01 -0.09 9.58 -39.39 -0.38 -0.46 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.14 1.38 7.64 -52.49 -0.40 0.98 16 33 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 34 H 0.40 0.92 8.83 -40.82 -0.36 0.56 16 35 H 0.40 0.98 8.83 -40.82 -0.36 0.62 16 36 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.14 1.38 7.60 -52.49 -0.40 0.98 16 LS Contribution 324.10 15.07 4.88 4.88 Total: -1.00 -33.40 324.10 -8.17 -41.57 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -5.29 Total: -2.93 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -3.08 Total: -15.36 kcal Atomic # 7 Polarization: -30.77 SS G_CDS: 1.03 Total: -29.74 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.70 Total: -15.35 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.40 -8.17 -41.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385847517.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.849 kcal (2) G-P(sol) polarization free energy of solvation -33.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds