Wall clock time and date at job start Mon Mar 30 2020 06:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 119.99951 * 2 1 4 4 H 1.48496 * 109.47444 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47241 * 300.00671 * 3 2 1 6 6 H 1.48504 * 109.47180 * 60.00274 * 3 2 1 7 7 C 1.37872 * 120.00225 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00259 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00080 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47582 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47424 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47008 * 180.02562 * 11 10 9 13 13 O 1.45208 * 109.47107 * 179.97438 * 12 11 10 14 14 C 1.34754 * 116.99790 * 180.02562 * 13 12 11 15 15 O 1.21520 * 120.00680 * 0.02562 * 14 13 12 16 16 C 1.47389 * 119.99587 * 180.02562 * 14 13 12 17 17 C 1.39857 * 120.07006 * 180.02562 * 16 14 13 18 18 C 1.37107 * 119.92133 * 180.02562 * 17 16 14 19 19 C 1.39240 * 120.07830 * 359.97438 * 18 17 16 20 20 N 1.39003 * 119.92801 * 179.97438 * 19 18 17 21 21 C 1.39247 * 120.14338 * 0.27439 * 19 18 17 22 22 C 1.37110 * 120.07123 * 359.44873 * 21 19 18 23 23 H 0.97002 * 120.00133 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.46985 * 60.00197 * 9 7 2 25 25 H 1.08996 * 109.47090 * 300.00741 * 9 7 2 26 26 H 1.09005 * 109.46380 * 59.99977 * 10 9 7 27 27 H 1.08998 * 109.46900 * 300.00970 * 10 9 7 28 28 H 1.08994 * 109.47013 * 59.99956 * 11 10 9 29 29 H 1.09004 * 109.46822 * 300.00188 * 11 10 9 30 30 H 1.09002 * 109.47124 * 60.00393 * 12 11 10 31 31 H 1.08996 * 109.47634 * 300.00058 * 12 11 10 32 32 H 1.07996 * 120.03814 * 0.02562 * 17 16 14 33 33 H 1.08004 * 119.96446 * 179.97438 * 18 17 16 34 34 H 0.97001 * 120.00330 * 0.02562 * 20 19 18 35 35 H 0.97005 * 119.99944 * 179.72463 * 20 19 18 36 36 H 1.08001 * 119.95996 * 179.72828 * 21 19 18 37 37 H 1.07999 * 120.03106 * 180.27545 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0005 13 8 1.7486 -7.4075 -0.0005 14 6 2.4826 -8.5376 0.0005 15 8 3.6961 -8.4741 0.0019 16 6 1.8135 -9.8509 0.0000 17 6 2.5738 -11.0247 0.0017 18 6 1.9482 -12.2448 0.0007 19 6 0.5576 -12.3159 -0.0014 20 7 -0.0734 -13.5545 -0.0030 21 6 -0.2023 -11.1491 -0.0083 22 6 0.4170 -9.9258 -0.0016 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 2.8719 -3.6043 0.8895 27 1 2.8720 -3.6043 -0.8904 28 1 0.8540 -5.0446 -0.8913 29 1 0.8533 -5.0451 0.8886 30 1 3.1006 -6.0923 0.8900 31 1 3.1019 -6.0922 -0.8900 32 1 3.6524 -10.9702 0.0038 33 1 2.5346 -13.1517 0.0015 34 1 0.4549 -14.3680 -0.0022 35 1 -1.0421 -13.6053 -0.0004 36 1 -1.2807 -11.2078 -0.0144 37 1 -0.1730 -9.0213 -0.0024 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385847517.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:35 Heat of formation + Delta-G solvation = -107.570573 kcal Electronic energy + Delta-G solvation = -18159.390737 eV Core-core repulsion = 15092.645404 eV Total energy + Delta-G solvation = -3066.745333 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.52794 -40.02439 -37.80498 -36.39228 -35.54405 -34.39184 -32.05280 -31.03694 -29.95803 -26.95771 -24.75495 -23.77906 -23.29548 -22.03422 -21.57042 -18.99014 -18.46061 -18.26769 -17.68042 -17.64549 -17.41506 -16.50495 -16.03275 -15.49745 -14.99212 -14.71285 -14.55803 -14.41203 -14.36903 -14.07469 -13.72898 -13.40833 -13.09200 -13.06297 -12.63635 -12.38122 -12.21942 -11.96146 -11.69497 -11.67301 -11.64519 -11.35533 -11.33572 -11.08736 -10.55288 -10.05296 -8.59735 -8.19788 -6.30678 -0.11152 0.48868 1.40615 1.40727 1.54372 1.60584 1.70219 2.41782 2.90184 2.91129 3.13327 3.71948 3.87310 3.94636 3.99285 4.03086 4.30948 4.38235 4.47315 4.50976 4.64423 4.71140 4.78566 5.07627 5.09953 5.16936 5.21796 5.23448 5.31659 5.47251 5.52132 5.55114 5.75101 5.75940 5.86339 6.25332 6.46006 6.76400 6.86434 6.91259 7.38445 8.92339 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.053894 B = 0.002571 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.409199 B =10890.069279 C =11378.426737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.097 4.097 11 C -0.105 4.105 12 C 0.076 3.924 13 O -0.358 6.358 14 C 0.507 3.493 15 O -0.553 6.553 16 C -0.221 4.221 17 C -0.011 4.011 18 C -0.215 4.215 19 C 0.260 3.740 20 N -0.848 5.848 21 C -0.217 4.217 22 C -0.014 4.014 23 H 0.264 0.736 24 H -0.005 1.005 25 H -0.005 1.005 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.130 0.870 33 H 0.154 0.846 34 H 0.413 0.587 35 H 0.413 0.587 36 H 0.152 0.848 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.877 -29.956 -0.001 29.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.134 4.134 11 C -0.143 4.143 12 C 0.002 3.998 13 O -0.274 6.274 14 C 0.356 3.644 15 O -0.446 6.446 16 C -0.225 4.225 17 C -0.030 4.030 18 C -0.237 4.237 19 C 0.149 3.851 20 N -0.384 5.384 21 C -0.240 4.240 22 C -0.033 4.033 23 H 0.073 0.927 24 H 0.013 0.987 25 H 0.013 0.987 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.148 0.852 33 H 0.172 0.828 34 H 0.244 0.756 35 H 0.243 0.757 36 H 0.170 0.830 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.682 -29.805 -0.004 29.812 hybrid contribution 0.259 1.034 0.008 1.066 sum -0.423 -28.771 0.004 28.774 Atomic orbital electron populations 1.70101 1.07755 1.27724 1.51757 1.25999 0.95827 1.03420 0.94783 0.85380 0.79018 0.78715 0.77812 1.18690 1.20313 1.20304 1.21752 0.93606 0.92446 1.50398 0.92186 1.19013 0.94415 0.92793 0.95170 1.21373 0.98233 0.92662 1.01165 1.21498 0.97886 0.91595 1.03306 1.23116 0.94706 0.79410 1.02520 1.86521 1.41646 1.15275 1.83977 1.21670 0.85413 0.85689 0.71663 1.90780 1.16306 1.88521 1.48989 1.18898 0.94745 0.89025 1.19814 1.20933 1.00219 0.90670 0.91220 1.20624 0.92851 0.98179 1.12044 1.18169 0.91899 0.87186 0.87848 1.42526 1.10685 1.04334 1.80883 1.20710 1.01068 0.90367 1.11824 1.21199 0.92437 0.99130 0.90522 0.92740 0.98674 0.98684 0.92552 0.92556 0.91166 0.91178 0.91237 0.91225 0.85166 0.82792 0.75648 0.75652 0.82996 0.84426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.56 13.29 21.44 0.28 -57.27 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 3 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 4 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.54 -31.64 9.11 25.60 0.23 -31.40 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 9 C 0.02 1.25 4.97 29.85 0.15 1.39 16 10 C -0.10 -4.05 5.15 30.59 0.16 -3.90 16 11 C -0.11 -3.72 5.59 30.59 0.17 -3.55 16 12 C 0.08 2.47 5.48 71.98 0.39 2.86 16 13 O -0.36 -11.36 9.46 -56.65 -0.54 -11.90 16 14 C 0.51 15.92 7.89 70.23 0.55 16.47 16 15 O -0.55 -20.06 16.13 19.77 0.32 -19.74 16 16 C -0.22 -5.47 5.88 -20.09 -0.12 -5.59 16 17 C -0.01 -0.23 9.56 22.40 0.21 -0.01 16 18 C -0.21 -2.99 9.85 22.24 0.22 -2.77 16 19 C 0.26 3.10 6.75 38.49 0.26 3.36 16 20 N -0.85 -3.62 9.05 -51.38 -0.47 -4.08 16 21 C -0.22 -3.09 9.85 22.25 0.22 -2.87 16 22 C -0.01 -0.27 9.58 22.39 0.21 -0.06 16 23 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 24 H -0.01 -0.30 8.14 -2.38 -0.02 -0.31 16 25 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 26 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 27 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 30 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.13 2.71 7.64 -2.91 -0.02 2.69 16 33 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 34 H 0.41 0.20 8.83 -92.71 -0.82 -0.62 16 35 H 0.41 0.34 8.83 -92.70 -0.82 -0.48 16 36 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 37 H 0.14 2.71 7.60 -2.91 -0.02 2.69 16 Total: -1.00 -72.79 324.10 4.20 -68.59 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -0.56 Total: 3.11 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: 3.13 Total: -25.76 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: -0.18 Total: -61.36 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.22 Total: -31.64 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -72.79 4.20 -68.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385847517.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.981 kcal (2) G-P(sol) polarization free energy of solvation -72.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds