Wall clock time and date at job start Mon Mar 30 2020 06:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 109.47227 * 2 1 4 4 C 1.50694 * 120.00340 * 275.16395 * 3 2 1 5 5 C 1.35982 * 119.99421 * 95.16290 * 3 2 1 6 6 C 1.40615 * 119.99656 * 175.86986 * 5 3 2 7 7 H 1.08001 * 119.99550 * 331.55587 * 6 5 3 8 8 C 1.39949 * 119.99597 * 151.28537 * 6 5 3 9 9 N 1.30837 * 119.99977 * 165.14553 * 8 6 5 10 10 Si 1.86799 * 120.00339 * 345.13817 * 8 6 5 11 11 H 1.48510 * 109.46591 * 89.70755 * 10 8 6 12 12 H 1.48501 * 109.47411 * 209.70137 * 10 8 6 13 13 H 1.48496 * 109.47090 * 329.70627 * 10 8 6 14 14 S 1.76199 * 120.00378 * 355.87058 * 5 3 2 15 15 C 1.76197 * 103.00111 * 114.09830 * 14 5 3 16 16 C 1.38747 * 120.10320 * 353.71851 * 15 14 5 17 17 C 1.38226 * 119.99338 * 179.77505 * 16 15 14 18 18 C 1.38287 * 120.20186 * 0.50420 * 17 16 15 19 19 C 1.38268 * 120.20364 * 359.74637 * 18 17 16 20 20 C 1.38658 * 120.00605 * 0.02562 * 19 18 17 21 21 N 1.39954 * 120.09788 * 180.02562 * 20 19 18 22 22 H 1.08993 * 109.47259 * 184.94005 * 1 2 3 23 23 H 1.09000 * 109.47226 * 304.94483 * 1 2 3 24 24 H 1.09005 * 109.47302 * 64.94242 * 1 2 3 25 25 H 1.09005 * 109.47383 * 240.00122 * 2 1 3 26 26 H 1.08997 * 109.47456 * 120.00476 * 2 1 3 27 27 H 1.09001 * 109.47427 * 183.53492 * 4 3 2 28 28 H 1.09004 * 109.47085 * 303.53380 * 4 3 2 29 29 H 1.09002 * 109.47053 * 63.53097 * 4 3 2 30 30 H 0.96996 * 120.00770 * 179.97438 * 9 8 6 31 31 H 1.08002 * 119.99863 * 0.02562 * 16 15 14 32 32 H 1.07997 * 119.90062 * 180.26020 * 17 16 15 33 33 H 1.07999 * 119.89812 * 179.77117 * 18 17 16 34 34 H 1.08004 * 119.99673 * 179.97438 * 19 18 17 35 35 H 0.97004 * 119.99620 * 179.97438 * 21 20 19 36 36 H 0.96988 * 120.00338 * 359.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1728 2.1704 -1.2997 5 6 2.3588 2.0264 1.1729 6 6 2.9092 3.3204 1.1667 7 1 3.4876 3.6570 0.3190 8 6 2.7025 4.1739 2.2564 9 7 3.4354 5.2490 2.3935 10 14 1.3802 3.7783 3.5151 11 1 1.9592 2.9372 4.5935 12 1 0.8582 5.0404 4.0981 13 1 0.2722 3.0427 2.8545 14 16 2.0924 1.1898 2.7006 15 6 3.7280 0.9414 3.3070 16 6 4.8204 1.2705 2.5174 17 6 6.1025 1.0791 2.9973 18 6 6.3011 0.5502 4.2595 19 6 5.2185 0.2146 5.0513 20 6 3.9287 0.4074 4.5804 21 7 2.8314 0.0688 5.3805 22 1 -0.3633 -1.0238 0.0885 23 1 -0.3634 0.5886 0.8424 24 1 -0.3634 0.4353 -0.9310 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.6058 3.1522 -1.1080 28 1 2.8230 1.6118 -1.9729 29 1 1.1911 2.2895 -1.7584 30 1 3.2921 5.8408 3.1485 31 1 4.6689 1.6799 1.5296 32 1 6.9517 1.3396 2.3830 33 1 7.3050 0.3993 4.6280 34 1 5.3775 -0.1986 6.0365 35 1 1.9297 0.2047 5.0497 36 1 2.9726 -0.3016 6.2656 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393767103.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:09 Heat of formation + Delta-G solvation = 0.437682 kcal Electronic energy + Delta-G solvation = -17952.219782 eV Core-core repulsion = 15332.910910 eV Total energy + Delta-G solvation = -2619.308872 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.97456 -37.51382 -35.33123 -35.09228 -32.28688 -31.57080 -29.39910 -29.22880 -26.23797 -23.75932 -23.50660 -22.88850 -19.73378 -19.53432 -18.23879 -17.67727 -17.21423 -16.85654 -15.94960 -15.21973 -15.16699 -14.91057 -14.76103 -14.54081 -14.29803 -14.03860 -13.74384 -13.49403 -13.17350 -12.92519 -12.80882 -12.56872 -12.37647 -12.05760 -11.95279 -11.55443 -11.52099 -11.48064 -11.10955 -10.80555 -10.26237 -9.48941 -8.81279 -8.69295 -7.73596 -6.30095 0.44987 0.71955 0.76301 1.21919 1.39170 1.45846 1.67943 2.03566 2.26051 2.96737 3.05186 3.17249 4.08130 4.28963 4.39821 4.47305 4.57677 4.69444 4.73880 4.85480 4.90273 5.05521 5.07170 5.09404 5.17220 5.18800 5.32320 5.34099 5.43275 5.53179 5.55362 5.77922 5.86261 6.04586 6.18652 6.34085 6.53190 6.74067 6.93076 6.98625 8.30856 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.016009 B = 0.010252 C = 0.008951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.618898 B = 2730.423255 C = 3127.333192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.063 4.063 3 C -0.254 4.254 4 C -0.073 4.073 5 C 0.001 3.999 6 C -0.459 4.459 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.857 5.857 10 Si 0.930 3.070 11 H -0.250 1.250 12 H -0.288 1.288 13 H -0.253 1.253 14 S -0.102 6.102 15 C -0.181 4.181 16 C -0.076 4.076 17 C -0.182 4.182 18 C -0.076 4.076 19 C -0.195 4.195 20 C 0.218 3.782 21 N -0.867 5.867 22 H 0.065 0.935 23 H 0.031 0.969 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.042 0.958 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.284 0.716 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.396 0.604 36 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.026 -10.448 5.022 11.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.101 4.101 3 C -0.263 4.263 4 C -0.132 4.132 5 C -0.111 4.111 6 C -0.493 4.493 7 H 0.081 0.919 8 C -0.159 4.159 9 N -0.486 5.486 10 Si 0.757 3.243 11 H -0.175 1.175 12 H -0.216 1.216 13 H -0.178 1.178 14 S 0.148 5.852 15 C -0.297 4.297 16 C -0.099 4.099 17 C -0.204 4.204 18 C -0.096 4.096 19 C -0.219 4.219 20 C 0.108 3.892 21 N -0.409 5.409 22 H 0.084 0.916 23 H 0.050 0.950 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.126 0.874 32 H 0.145 0.855 33 H 0.172 0.828 34 H 0.171 0.829 35 H 0.224 0.776 36 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -1.029 -10.533 5.645 11.995 hybrid contribution 0.542 0.993 -0.237 1.156 sum -0.487 -9.540 5.408 10.977 Atomic orbital electron populations 1.21650 0.95390 1.01048 1.00763 1.20239 0.95752 0.93160 1.00958 1.22148 1.13172 0.97559 0.93461 1.20366 0.99910 0.98877 0.94061 1.20475 1.02180 0.96236 0.92182 1.19039 1.29906 0.97139 1.03263 0.91877 1.26637 0.96467 0.93822 0.98929 1.69716 1.35563 1.13329 1.29960 0.85415 0.80467 0.77949 0.80499 1.17495 1.21645 1.17803 1.82978 1.07251 1.71236 1.23760 1.21502 0.97779 1.12111 0.98262 1.21202 0.92841 0.96552 0.99346 1.21067 0.95806 1.05256 0.98271 1.21220 0.99611 0.95944 0.92842 1.20798 0.89615 1.09137 1.02315 1.17568 0.89579 0.93713 0.88357 1.42451 1.05606 1.73330 1.19521 0.91576 0.94965 0.92881 0.92377 0.92430 0.93855 0.92961 0.93046 0.90655 0.87430 0.85484 0.82767 0.82884 0.77572 0.75781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 9.89 71.98 0.71 -3.59 16 2 C -0.06 -2.36 5.70 29.85 0.17 -2.19 16 3 C -0.25 -11.27 5.46 -16.97 -0.09 -11.36 16 4 C -0.07 -3.02 9.95 71.23 0.71 -2.31 16 5 C 0.00 0.05 3.65 22.33 0.08 0.13 16 6 C -0.46 -25.36 7.08 23.26 0.16 -25.19 16 7 H 0.06 3.79 6.50 -2.91 -0.02 3.77 16 8 C 0.06 3.05 5.46 85.26 0.47 3.51 16 9 N -0.86 -49.14 13.93 21.83 0.30 -48.83 16 10 Si 0.93 44.65 24.29 68.60 1.67 46.32 16 11 H -0.25 -11.68 6.75 99.48 0.67 -11.00 16 12 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 13 H -0.25 -12.09 6.80 99.48 0.68 -11.41 16 14 S -0.10 -4.51 12.48 -56.49 -0.71 -5.22 16 15 C -0.18 -7.79 6.11 22.70 0.14 -7.65 16 16 C -0.08 -3.37 9.01 22.39 0.20 -3.16 16 17 C -0.18 -6.68 10.04 22.28 0.22 -6.45 16 18 C -0.08 -2.26 10.04 22.29 0.22 -2.04 16 19 C -0.19 -5.81 9.89 22.38 0.22 -5.59 16 20 C 0.22 7.77 6.76 38.26 0.26 8.03 16 21 N -0.87 -25.31 9.04 -50.97 -0.46 -25.77 16 22 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.03 1.15 8.14 -2.39 -0.02 1.14 16 24 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 25 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 26 H 0.06 2.24 6.59 -2.39 -0.02 2.22 16 27 H 0.04 1.98 5.61 -2.39 -0.01 1.97 16 28 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.28 15.09 8.30 -92.71 -0.77 14.32 16 31 H 0.11 5.40 5.61 -2.91 -0.02 5.38 16 32 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 33 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 34 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 35 H 0.40 12.15 7.38 -92.71 -0.68 11.47 16 36 H 0.41 8.68 8.84 -92.72 -0.82 7.86 16 Total: -1.00 -62.32 301.28 3.81 -58.51 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: -0.47 Total: 32.86 kcal Atomic # 6 Polarization: -61.34 SS G_CDS: 3.48 Total: -57.86 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -0.16 Total: -74.61 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.67 Total: 46.32 kcal Atomic # 16 Polarization: -4.51 SS G_CDS: -0.71 Total: -5.22 kcal Total: -62.32 3.81 -58.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393767103.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.943 kcal (2) G-P(sol) polarization free energy of solvation -62.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds