Wall clock time and date at job start Mon Mar 30 2020 06:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81393 * 103.00378 * 2 1 4 4 H 1.09003 * 112.84990 * 316.20019 * 3 2 1 5 5 C 1.53784 * 113.61401 * 87.49913 * 3 2 1 6 6 C 1.54054 * 87.07303 * 139.98220 * 5 3 2 7 7 C 1.53774 * 113.61798 * 184.99993 * 3 2 1 8 8 H 1.09005 * 113.61406 * 105.38684 * 7 3 2 9 9 N 1.46498 * 113.61286 * 334.56901 * 7 3 2 10 10 C 1.38861 * 120.00097 * 156.52969 * 9 7 3 11 11 C 1.39566 * 119.84252 * 179.97438 * 10 9 7 12 12 C 1.36342 * 120.15886 * 180.02562 * 11 10 9 13 13 C 1.40889 * 119.83617 * 0.02562 * 12 11 10 14 14 C 1.41140 * 120.15120 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99842 * 335.18507 * 14 13 12 16 16 C 1.39862 * 119.99611 * 155.19141 * 14 13 12 17 17 N 1.30901 * 120.00443 * 342.28366 * 16 14 13 18 18 Si 1.86803 * 119.99968 * 162.28126 * 16 14 13 19 19 H 1.48501 * 109.47245 * 94.65287 * 18 16 14 20 20 H 1.48503 * 109.47218 * 214.65385 * 18 16 14 21 21 H 1.48504 * 109.46956 * 334.65203 * 18 16 14 22 22 C 1.40878 * 119.69099 * 0.25509 * 13 12 11 23 23 C 1.36346 * 119.83828 * 359.46780 * 22 13 12 24 24 H 1.08999 * 109.47014 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47178 * 300.00104 * 1 2 3 26 26 H 1.09002 * 109.47347 * 59.99981 * 1 2 3 27 27 H 1.08997 * 113.61840 * 254.52886 * 5 3 2 28 28 H 1.08996 * 113.61388 * 25.35799 * 5 3 2 29 29 H 1.09005 * 113.69384 * 220.05508 * 6 5 3 30 30 H 1.08995 * 113.61349 * 89.07787 * 6 5 3 31 31 H 0.96997 * 120.00420 * 336.52670 * 9 7 3 32 32 H 1.07991 * 119.92015 * 0.02562 * 11 10 9 33 33 H 1.07998 * 120.08380 * 180.02562 * 12 11 10 34 34 H 0.97003 * 120.00170 * 180.02562 * 17 16 14 35 35 H 1.07999 * 120.08324 * 179.74190 * 22 13 12 36 36 H 1.07999 * 119.92522 * 180.25436 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.6110 2.3430 -0.6952 5 6 2.3008 2.3815 1.4077 6 6 3.5228 3.1749 0.9073 7 6 3.7284 2.0519 -0.1228 8 1 4.0258 2.4119 -1.1077 9 7 4.5736 0.9580 0.3622 10 6 5.8760 0.8287 -0.1017 11 6 6.6785 -0.2143 0.3630 12 6 7.9583 -0.3470 -0.0878 13 6 8.4704 0.5723 -1.0247 14 6 9.7945 0.4415 -1.4954 15 1 10.5337 -0.0667 -0.8940 16 6 10.1493 0.9701 -2.7407 17 7 9.2207 1.2697 -3.6133 18 14 11.9485 1.2488 -3.1588 19 1 12.4731 0.0721 -3.8973 20 1 12.0779 2.4623 -4.0050 21 1 12.7248 1.4337 -1.9064 22 6 7.6565 1.6261 -1.4848 23 6 6.3766 1.7433 -1.0296 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.4458 3.0090 1.6589 28 1 2.5381 1.6575 2.1872 29 1 4.3271 3.2484 1.6394 30 1 3.2666 4.1356 0.4607 31 1 4.2235 0.3240 1.0075 32 1 6.2847 -0.9179 1.0814 33 1 8.5781 -1.1548 0.2723 34 1 9.4668 1.6360 -4.4772 35 1 8.0439 2.3368 -2.1998 36 1 5.7501 2.5482 -1.3846 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425333351.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:02 Heat of formation + Delta-G solvation = 44.737637 kcal Electronic energy + Delta-G solvation = -17055.967874 eV Core-core repulsion = 14438.579992 eV Total energy + Delta-G solvation = -2617.387882 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.22217 -37.31733 -34.05116 -32.17891 -29.43753 -29.05997 -28.34518 -25.74571 -25.17415 -23.92762 -21.14048 -20.48640 -18.79883 -17.18508 -16.79852 -16.51327 -15.01506 -14.76179 -14.66804 -14.19864 -13.71825 -13.65607 -13.38009 -13.17114 -12.61404 -12.57554 -12.38832 -11.98283 -11.79186 -11.41864 -11.21713 -10.98385 -10.77108 -10.67068 -10.42702 -10.20923 -9.79930 -9.67484 -9.24023 -9.16813 -8.52545 -7.62062 -7.45291 -6.60975 -6.36140 -4.00399 1.70174 2.60522 2.93717 3.14159 3.17029 3.22034 3.37261 4.07980 4.17883 4.49295 4.57152 4.77532 4.99735 5.01552 5.02529 5.07777 5.46868 5.56437 5.65289 5.81803 5.86686 6.04029 6.09668 6.25730 6.33320 6.38931 6.96837 6.97783 7.23465 7.38981 7.59181 7.72914 7.87702 8.18547 8.32563 8.52356 8.73270 8.83329 9.09371 9.18564 10.40521 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.038667 B = 0.004107 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.957787 B = 6815.658032 C = 6919.786624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.232 6.232 3 C -0.100 4.100 4 H 0.106 0.894 5 C -0.124 4.124 6 C -0.161 4.161 7 C 0.177 3.823 8 H 0.093 0.907 9 N -0.733 5.733 10 C 0.093 3.907 11 C -0.155 4.155 12 C -0.187 4.187 13 C 0.076 3.924 14 C -0.467 4.467 15 H 0.072 0.928 16 C 0.075 3.925 17 N -0.808 5.808 18 Si 0.901 3.099 19 H -0.273 1.273 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.125 4.125 23 C -0.162 4.162 24 H 0.096 0.904 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.390 0.610 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.276 0.724 35 H 0.117 0.883 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.859 2.930 5.686 15.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S -0.003 6.003 3 C -0.230 4.230 4 H 0.124 0.876 5 C -0.164 4.164 6 C -0.203 4.203 7 C 0.067 3.933 8 H 0.111 0.889 9 N -0.368 5.368 10 C -0.004 4.004 11 C -0.177 4.177 12 C -0.207 4.207 13 C 0.073 3.927 14 C -0.498 4.498 15 H 0.090 0.910 16 C -0.140 4.140 17 N -0.435 5.435 18 Si 0.726 3.274 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.145 4.145 23 C -0.184 4.184 24 H 0.115 0.885 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.224 0.776 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.135 0.865 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.231 2.227 5.307 14.429 hybrid contribution -0.381 0.919 -0.178 1.011 sum -13.612 3.146 5.129 14.882 Atomic orbital electron populations 1.23388 0.96234 1.06015 1.04386 1.87178 1.04978 1.10642 1.97528 1.25443 1.02041 0.94213 1.01285 0.87553 1.23221 0.98742 0.99340 0.95087 1.23557 0.98207 0.97980 1.00543 1.21273 0.85814 0.88324 0.97909 0.88898 1.43555 1.11024 1.31350 1.50837 1.17315 0.84362 0.98669 1.00030 1.19797 0.95272 0.98762 1.03840 1.20542 0.94748 1.00549 1.04869 1.17492 0.93375 0.90302 0.91533 1.19368 0.95628 1.33061 1.01789 0.90974 1.25785 0.98960 0.93426 0.95812 1.69860 1.34513 1.33574 1.05559 0.86424 0.83463 0.78422 0.79058 1.19873 1.20310 1.18680 1.20915 0.93093 0.98815 1.01635 1.20113 0.97047 1.00107 1.01137 0.88509 0.90938 0.90903 0.91616 0.89190 0.90180 0.89878 0.77574 0.89576 0.89056 0.91374 0.86474 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 10.76 101.05 1.09 -0.13 16 2 S -0.23 -3.06 20.67 -107.50 -2.22 -5.29 16 3 C -0.10 -1.22 4.23 -25.92 -0.11 -1.32 16 4 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 5 C -0.12 -1.35 7.56 -25.77 -0.19 -1.55 16 6 C -0.16 -1.99 7.90 -25.78 -0.20 -2.19 16 7 C 0.18 2.64 3.94 -67.12 -0.26 2.38 16 8 H 0.09 1.50 6.17 -51.93 -0.32 1.18 16 9 N -0.73 -13.02 4.88 -51.25 -0.25 -13.27 16 10 C 0.09 2.04 6.67 -83.68 -0.56 1.48 16 11 C -0.15 -3.55 9.82 -39.77 -0.39 -3.94 16 12 C -0.19 -4.70 9.74 -39.26 -0.38 -5.09 16 13 C 0.08 2.07 5.57 -106.79 -0.59 1.48 16 14 C -0.47 -12.84 9.03 -37.87 -0.34 -13.18 16 15 H 0.07 1.92 7.90 -52.49 -0.41 1.50 16 16 C 0.08 1.96 5.13 -17.34 -0.09 1.87 16 17 N -0.81 -21.65 10.98 55.54 0.61 -21.04 16 18 Si 0.90 19.38 29.59 -169.99 -5.03 14.35 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 21 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 22 C -0.12 -3.29 8.63 -39.27 -0.34 -3.63 16 23 C -0.16 -3.81 9.18 -39.76 -0.37 -4.18 16 24 H 0.10 0.81 8.14 -51.92 -0.42 0.39 16 25 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 26 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.39 6.61 7.67 -40.82 -0.31 6.29 16 32 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 34 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 35 H 0.12 3.20 6.19 -52.49 -0.32 2.88 16 36 H 0.09 1.88 6.04 -52.49 -0.32 1.56 16 LS Contribution 309.09 15.07 4.66 4.66 Total: -1.00 -28.28 309.09 -10.03 -38.31 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.05 Total: 10.29 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: -2.75 Total: -28.00 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.36 Total: -34.32 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Atomic # 16 Polarization: -3.06 SS G_CDS: -2.22 Total: -5.29 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.28 -10.03 -38.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425333351.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.045 kcal (2) G-P(sol) polarization free energy of solvation -28.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds