Wall clock time and date at job start Mon Mar 30 2020 06:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81393 * 103.00378 * 2 1 4 4 H 1.09003 * 112.84990 * 316.20019 * 3 2 1 5 5 C 1.53784 * 113.61401 * 87.49913 * 3 2 1 6 6 C 1.54054 * 87.07303 * 139.98220 * 5 3 2 7 7 C 1.53774 * 113.61798 * 184.99993 * 3 2 1 8 8 H 1.09005 * 113.61406 * 105.38684 * 7 3 2 9 9 N 1.46498 * 113.61286 * 334.56901 * 7 3 2 10 10 C 1.38861 * 120.00097 * 156.52969 * 9 7 3 11 11 C 1.39566 * 119.84252 * 179.97438 * 10 9 7 12 12 C 1.36342 * 120.15886 * 180.02562 * 11 10 9 13 13 C 1.40889 * 119.83617 * 0.02562 * 12 11 10 14 14 C 1.41140 * 120.15120 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99842 * 335.18507 * 14 13 12 16 16 C 1.39862 * 119.99611 * 155.19141 * 14 13 12 17 17 N 1.30901 * 120.00443 * 342.28366 * 16 14 13 18 18 Si 1.86803 * 119.99968 * 162.28126 * 16 14 13 19 19 H 1.48501 * 109.47245 * 94.65287 * 18 16 14 20 20 H 1.48503 * 109.47218 * 214.65385 * 18 16 14 21 21 H 1.48504 * 109.46956 * 334.65203 * 18 16 14 22 22 C 1.40878 * 119.69099 * 0.25509 * 13 12 11 23 23 C 1.36346 * 119.83828 * 359.46780 * 22 13 12 24 24 H 1.08999 * 109.47014 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47178 * 300.00104 * 1 2 3 26 26 H 1.09002 * 109.47347 * 59.99981 * 1 2 3 27 27 H 1.08997 * 113.61840 * 254.52886 * 5 3 2 28 28 H 1.08996 * 113.61388 * 25.35799 * 5 3 2 29 29 H 1.09005 * 113.69384 * 220.05508 * 6 5 3 30 30 H 1.08995 * 113.61349 * 89.07787 * 6 5 3 31 31 H 0.96997 * 120.00420 * 336.52670 * 9 7 3 32 32 H 1.07991 * 119.92015 * 0.02562 * 11 10 9 33 33 H 1.07998 * 120.08380 * 180.02562 * 12 11 10 34 34 H 0.97003 * 120.00170 * 180.02562 * 17 16 14 35 35 H 1.07999 * 120.08324 * 179.74190 * 22 13 12 36 36 H 1.07999 * 119.92522 * 180.25436 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.6110 2.3430 -0.6952 5 6 2.3008 2.3815 1.4077 6 6 3.5228 3.1749 0.9073 7 6 3.7284 2.0519 -0.1228 8 1 4.0258 2.4119 -1.1077 9 7 4.5736 0.9580 0.3622 10 6 5.8760 0.8287 -0.1017 11 6 6.6785 -0.2143 0.3630 12 6 7.9583 -0.3470 -0.0878 13 6 8.4704 0.5723 -1.0247 14 6 9.7945 0.4415 -1.4954 15 1 10.5337 -0.0667 -0.8940 16 6 10.1493 0.9701 -2.7407 17 7 9.2207 1.2697 -3.6133 18 14 11.9485 1.2488 -3.1588 19 1 12.4731 0.0721 -3.8973 20 1 12.0779 2.4623 -4.0050 21 1 12.7248 1.4337 -1.9064 22 6 7.6565 1.6261 -1.4848 23 6 6.3766 1.7433 -1.0296 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.4458 3.0090 1.6589 28 1 2.5381 1.6575 2.1872 29 1 4.3271 3.2484 1.6394 30 1 3.2666 4.1356 0.4607 31 1 4.2235 0.3240 1.0075 32 1 6.2847 -0.9179 1.0814 33 1 8.5781 -1.1548 0.2723 34 1 9.4668 1.6360 -4.4772 35 1 8.0439 2.3368 -2.1998 36 1 5.7501 2.5482 -1.3846 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425333351.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:02 Heat of formation + Delta-G solvation = 30.424913 kcal Electronic energy + Delta-G solvation = -17056.588520 eV Core-core repulsion = 14438.579992 eV Total energy + Delta-G solvation = -2618.008528 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.50770 -39.01524 -35.84942 -33.90226 -31.35309 -30.28405 -29.68221 -26.80604 -26.59522 -25.48588 -22.96080 -22.20687 -20.04802 -19.14703 -18.25549 -17.69179 -16.81347 -16.08554 -16.00281 -15.57700 -15.13534 -14.66643 -14.50028 -14.32508 -14.20837 -13.99455 -13.79554 -13.59823 -13.31454 -13.07240 -12.74259 -12.69850 -12.29269 -12.04697 -11.80389 -11.56964 -11.31744 -11.12781 -10.97313 -10.73594 -10.26736 -9.39314 -8.63053 -8.53683 -8.15283 -5.99918 0.78812 1.11572 1.19653 1.40881 1.53456 1.59834 1.72829 2.28580 2.81871 2.86181 3.44243 3.60613 3.83244 3.98535 4.06220 4.35981 4.37800 4.38908 4.50872 4.57476 4.69584 4.87607 4.90306 5.02500 5.03841 5.10014 5.15546 5.26704 5.35805 5.46298 5.71624 5.82029 5.96980 6.19794 6.40538 6.68464 6.88405 7.09618 7.13899 7.30103 8.49700 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.038667 B = 0.004107 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.957787 B = 6815.658032 C = 6919.786624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.301 6.301 3 C -0.080 4.080 4 H 0.126 0.874 5 C -0.109 4.109 6 C -0.152 4.152 7 C 0.152 3.848 8 H 0.078 0.922 9 N -0.725 5.725 10 C 0.116 3.884 11 C -0.166 4.166 12 C -0.196 4.196 13 C 0.037 3.963 14 C -0.507 4.507 15 H 0.067 0.933 16 C 0.033 3.967 17 N -0.842 5.842 18 Si 0.976 3.024 19 H -0.266 1.266 20 H -0.267 1.267 21 H -0.261 1.261 22 C -0.142 4.142 23 C -0.172 4.172 24 H 0.105 0.895 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.396 0.604 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.282 0.718 35 H 0.099 0.901 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.865 3.693 6.388 17.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.073 6.073 3 C -0.210 4.210 4 H 0.144 0.856 5 C -0.149 4.149 6 C -0.193 4.193 7 C 0.043 3.957 8 H 0.096 0.904 9 N -0.358 5.358 10 C 0.017 3.983 11 C -0.188 4.188 12 C -0.216 4.216 13 C 0.034 3.966 14 C -0.538 4.538 15 H 0.085 0.915 16 C -0.179 4.179 17 N -0.470 5.470 18 Si 0.798 3.202 19 H -0.191 1.191 20 H -0.192 1.192 21 H -0.185 1.185 22 C -0.162 4.162 23 C -0.193 4.193 24 H 0.123 0.877 25 H 0.107 0.893 26 H 0.102 0.898 27 H 0.112 0.888 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.124 0.876 31 H 0.232 0.768 32 H 0.130 0.870 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.293 2.997 6.033 16.711 hybrid contribution -0.003 0.653 -0.325 0.730 sum -15.296 3.651 5.708 16.730 Atomic orbital electron populations 1.23402 0.91926 1.07047 1.05707 1.87411 1.09817 1.12402 1.97714 1.25353 0.99613 0.93403 1.02631 0.85603 1.23142 0.98887 0.98874 0.94008 1.23503 0.98498 0.98162 0.99185 1.21588 0.87447 0.88665 0.97982 0.90413 1.43553 1.09618 1.32298 1.50373 1.17410 0.85876 0.97011 0.98052 1.20062 0.94689 0.99649 1.04378 1.20733 0.95874 1.00380 1.04615 1.17810 0.94135 0.91536 0.93148 1.19596 0.96068 1.35213 1.02967 0.91473 1.26602 1.03597 0.92600 0.95097 1.69922 1.36679 1.34345 1.06084 0.85295 0.77468 0.78691 0.78785 1.19077 1.19202 1.18517 1.20855 0.94397 0.98783 1.02155 1.20276 0.96372 1.01184 1.01518 0.87667 0.89301 0.89828 0.88774 0.89844 0.91616 0.87646 0.76833 0.87011 0.88631 0.90763 0.88279 0.87407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 10.76 113.37 1.22 -0.49 16 2 S -0.30 -7.35 20.67 -56.49 -1.17 -8.52 16 3 C -0.08 -1.72 4.23 31.12 0.13 -1.59 16 4 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 5 C -0.11 -1.99 7.56 31.21 0.24 -1.75 16 6 C -0.15 -3.34 7.90 31.21 0.25 -3.10 16 7 C 0.15 4.26 3.94 45.51 0.18 4.44 16 8 H 0.08 2.41 6.17 -2.38 -0.01 2.40 16 9 N -0.72 -24.84 4.88 -316.05 -1.54 -26.38 16 10 C 0.12 5.05 6.67 38.67 0.26 5.31 16 11 C -0.17 -7.58 9.82 22.15 0.22 -7.37 16 12 C -0.20 -10.12 9.74 22.48 0.22 -9.91 16 13 C 0.04 2.08 5.57 -21.27 -0.12 1.96 16 14 C -0.51 -29.06 9.03 23.38 0.21 -28.85 16 15 H 0.07 3.74 7.90 -2.91 -0.02 3.71 16 16 C 0.03 1.76 5.13 85.22 0.44 2.20 16 17 N -0.84 -46.64 10.98 21.81 0.24 -46.40 16 18 Si 0.98 40.62 29.59 68.60 2.03 42.65 16 19 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 20 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 21 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 22 C -0.14 -7.77 8.63 22.47 0.19 -7.58 16 23 C -0.17 -8.16 9.18 22.15 0.20 -7.96 16 24 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.08 1.67 8.10 -2.39 -0.02 1.65 16 29 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.40 12.83 7.67 -92.71 -0.71 12.12 16 32 H 0.11 4.47 8.06 -2.92 -0.02 4.44 16 33 H 0.10 4.70 8.06 -2.91 -0.02 4.67 16 34 H 0.28 14.19 8.30 -92.71 -0.77 13.42 16 35 H 0.10 5.70 6.19 -2.91 -0.02 5.68 16 36 H 0.11 4.60 6.04 -2.91 -0.02 4.58 16 Total: -1.00 -63.47 309.09 3.56 -59.91 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: 0.36 Total: 33.43 kcal Atomic # 6 Polarization: -58.32 SS G_CDS: 3.63 Total: -54.69 kcal Atomic # 7 Polarization: -71.49 SS G_CDS: -1.30 Total: -72.79 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Atomic # 16 Polarization: -7.35 SS G_CDS: -1.17 Total: -8.52 kcal Total: -63.47 3.56 -59.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425333351.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.336 kcal (2) G-P(sol) polarization free energy of solvation -63.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds