Wall clock time and date at job start Mon Mar 30 2020 06:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81404 * 103.00112 * 2 1 4 4 H 1.09005 * 112.84308 * 45.33549 * 3 2 1 5 5 C 1.53780 * 113.69078 * 274.06841 * 3 2 1 6 6 C 1.53780 * 87.07844 * 220.00875 * 5 3 2 7 7 C 1.53775 * 87.08486 * 25.43251 * 6 5 3 8 8 H 1.08997 * 113.61490 * 89.11261 * 7 6 5 9 9 N 1.46501 * 113.69146 * 220.01050 * 7 6 5 10 10 C 1.39681 * 119.99874 * 252.53299 * 9 7 6 11 11 C 1.39337 * 119.95124 * 359.97438 * 10 9 7 12 12 C 1.38482 * 120.42030 * 179.97438 * 11 10 9 13 13 C 1.37682 * 120.33131 * 0.02604 * 12 11 10 14 14 C 1.40756 * 119.88848 * 359.97388 * 13 12 11 15 15 C 1.41409 * 120.20563 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99626 * 24.34103 * 15 14 13 17 17 C 1.39932 * 119.99858 * 204.33977 * 15 14 13 18 18 N 1.30824 * 120.00067 * 17.73989 * 17 15 14 19 19 Si 1.86798 * 119.99739 * 197.73746 * 17 15 14 20 20 H 1.48497 * 109.47363 * 60.00051 * 19 17 15 21 21 H 1.48496 * 109.47052 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47230 * 300.00198 * 19 17 15 23 23 C 1.38279 * 119.95267 * 179.72626 * 10 9 7 24 24 H 1.08997 * 109.47241 * 59.99486 * 1 2 3 25 25 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46472 * 299.99703 * 1 2 3 27 27 H 1.09000 * 113.61155 * 334.55826 * 5 3 2 28 28 H 1.08999 * 113.61497 * 105.45740 * 5 3 2 29 29 H 1.09008 * 113.61090 * 270.88455 * 6 5 3 30 30 H 1.08996 * 113.68918 * 139.99859 * 6 5 3 31 31 H 0.96997 * 119.99940 * 72.53660 * 9 7 6 32 32 H 1.07994 * 119.78724 * 359.96090 * 11 10 9 33 33 H 1.08001 * 119.83189 * 180.02562 * 12 11 10 34 34 H 1.07995 * 120.05968 * 179.97438 * 13 12 11 35 35 H 0.97003 * 119.99905 * 179.97438 * 18 17 15 36 36 H 1.08004 * 120.15756 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6293 2.3387 0.7145 5 6 2.2638 2.3921 -1.4047 6 6 3.4963 3.1807 -0.9317 7 6 3.7311 2.0513 0.0852 8 1 4.3502 1.2403 -0.2982 9 7 4.1656 2.5254 1.4016 10 6 5.4872 2.3344 1.8114 11 6 6.3913 1.6923 0.9676 12 6 7.7040 1.4983 1.3639 13 6 8.1302 1.9376 2.5971 14 6 7.2282 2.5878 3.4602 15 6 7.6589 3.0422 4.7282 16 1 8.7032 3.2592 4.8979 17 6 6.7320 3.2107 5.7629 18 7 5.5583 2.6376 5.6895 19 14 7.1708 4.2539 7.2490 20 1 7.4733 5.6396 6.8092 21 1 6.0267 4.2731 8.1955 22 1 8.3614 3.6779 7.9241 23 6 5.8978 2.7872 3.0517 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 2.4818 1.6742 -2.1953 28 1 1.4023 3.0212 -1.6285 29 1 3.2518 4.1384 -0.4719 30 1 4.2805 3.2605 -1.6844 31 1 3.5356 2.9719 1.9885 32 1 6.0662 1.3437 -0.0014 33 1 8.3968 0.9998 0.7021 34 1 9.1547 1.7836 2.9018 35 1 4.9160 2.7541 6.4069 36 1 5.1988 3.2882 3.7051 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425372652.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:08 Heat of formation + Delta-G solvation = 37.929233 kcal Electronic energy + Delta-G solvation = -17086.352125 eV Core-core repulsion = 14468.669008 eV Total energy + Delta-G solvation = -2617.683117 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.08346 -37.23080 -33.95542 -32.72463 -29.41250 -29.03280 -27.77966 -25.73646 -25.19230 -24.03568 -21.16756 -20.03471 -19.44671 -17.38093 -16.73576 -15.87544 -15.40576 -14.76963 -14.49899 -14.45966 -13.76224 -13.36685 -13.13955 -13.07737 -12.81500 -12.63727 -12.36662 -12.10739 -11.72998 -11.34372 -11.20533 -11.01872 -10.92163 -10.54450 -10.43026 -10.28555 -9.81040 -9.58452 -9.40702 -9.20973 -8.74299 -7.62059 -7.27920 -6.70147 -6.15857 -4.28237 1.73140 2.60101 2.90791 3.10509 3.14042 3.25778 3.35962 3.99840 4.28927 4.43312 4.57023 4.74133 4.93674 5.00810 5.04281 5.07634 5.53667 5.58454 5.65815 5.72568 5.86052 5.99895 6.05209 6.30743 6.34016 6.63723 6.91427 7.12775 7.16740 7.40722 7.45886 7.82521 7.98523 8.13937 8.19918 8.51464 8.69795 8.85973 9.04130 9.14528 10.28719 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.023812 B = 0.004812 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.617918 B = 5817.701042 C = 6359.258109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.250 6.250 3 C -0.092 4.092 4 H 0.103 0.897 5 C -0.127 4.127 6 C -0.154 4.154 7 C 0.176 3.824 8 H 0.110 0.890 9 N -0.744 5.744 10 C 0.215 3.785 11 C -0.298 4.298 12 C -0.065 4.065 13 C -0.257 4.257 14 C 0.139 3.861 15 C -0.466 4.466 16 H 0.076 0.924 17 C 0.078 3.922 18 N -0.793 5.793 19 Si 0.904 3.096 20 H -0.265 1.265 21 H -0.280 1.280 22 H -0.266 1.266 23 C -0.230 4.230 24 H 0.073 0.927 25 H 0.096 0.904 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.390 0.610 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.278 0.722 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.767 -0.014 -9.551 13.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.021 6.021 3 C -0.222 4.222 4 H 0.121 0.879 5 C -0.167 4.167 6 C -0.196 4.196 7 C 0.066 3.934 8 H 0.128 0.872 9 N -0.375 5.375 10 C 0.117 3.883 11 C -0.321 4.321 12 C -0.084 4.084 13 C -0.278 4.278 14 C 0.136 3.864 15 C -0.496 4.496 16 H 0.094 0.906 17 C -0.139 4.139 18 N -0.418 5.418 19 Si 0.729 3.271 20 H -0.189 1.189 21 H -0.205 1.205 22 H -0.191 1.191 23 C -0.253 4.253 24 H 0.092 0.908 25 H 0.115 0.885 26 H 0.092 0.908 27 H 0.111 0.889 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.224 0.776 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.303 -1.065 -9.527 13.358 hybrid contribution -1.117 1.529 1.053 2.167 sum -10.420 0.464 -8.474 13.439 Atomic orbital electron populations 1.23334 0.95355 1.06054 1.04541 1.87057 1.06149 1.11301 1.97597 1.25421 1.02238 0.93588 1.00925 0.87889 1.23081 0.99089 0.99466 0.95086 1.23488 0.97636 0.98837 0.99607 1.21919 0.90132 0.96052 0.85295 0.87214 1.44367 1.09624 1.66789 1.16748 1.17640 0.82748 0.94585 0.93331 1.19897 0.94602 1.17030 1.00557 1.20280 0.94374 0.98201 0.95557 1.20861 0.99284 1.10601 0.97007 1.17311 0.90749 0.86709 0.91597 1.19526 0.95230 1.39846 0.94975 0.90620 1.25868 0.94410 0.93837 0.99779 1.69862 1.06438 1.33101 1.32401 0.86446 0.78916 0.81284 0.80480 1.18931 1.20503 1.19076 1.20722 0.98465 1.11448 0.94686 0.90811 0.88477 0.90767 0.88891 0.91081 0.89748 0.90607 0.77620 0.89618 0.89613 0.89393 0.91160 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 10.76 101.05 1.09 -0.13 16 2 S -0.25 -3.43 22.18 -107.50 -2.38 -5.81 16 3 C -0.09 -1.19 4.02 -25.92 -0.10 -1.30 16 4 H 0.10 1.30 8.12 -51.93 -0.42 0.88 16 5 C -0.13 -1.37 7.67 -25.92 -0.20 -1.57 16 6 C -0.15 -1.96 7.88 -25.92 -0.20 -2.16 16 7 C 0.18 2.74 3.63 -67.12 -0.24 2.49 16 8 H 0.11 1.88 6.08 -51.93 -0.32 1.56 16 9 N -0.74 -14.15 5.53 -51.43 -0.28 -14.44 16 10 C 0.21 5.04 6.64 -83.86 -0.56 4.48 16 11 C -0.30 -6.86 9.27 -39.08 -0.36 -7.23 16 12 C -0.07 -1.53 10.01 -39.69 -0.40 -1.93 16 13 C -0.26 -6.58 9.79 -38.83 -0.38 -6.96 16 14 C 0.14 3.83 5.57 -106.85 -0.60 3.24 16 15 C -0.47 -12.70 9.05 -37.74 -0.34 -13.04 16 16 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 17 C 0.08 2.01 5.14 -17.35 -0.09 1.92 16 18 N -0.79 -20.90 10.96 55.55 0.61 -20.29 16 19 Si 0.90 19.03 29.59 -169.99 -5.03 14.00 16 20 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 C -0.23 -6.04 8.53 -38.68 -0.33 -6.37 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 26 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 27 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.39 7.07 8.73 -40.82 -0.36 6.72 16 32 H 0.09 1.78 6.03 -52.49 -0.32 1.47 16 33 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 34 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 35 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 36 H 0.12 3.15 6.16 -52.48 -0.32 2.82 16 LS Contribution 311.96 15.07 4.70 4.70 Total: -1.00 -28.53 311.96 -10.19 -38.72 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -5.09 Total: 11.67 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: -2.72 Total: -28.55 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.32 Total: -34.73 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -2.38 Total: -5.81 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.53 -10.19 -38.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425372652.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.648 kcal (2) G-P(sol) polarization free energy of solvation -28.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds