Wall clock time and date at job start Mon Mar 30 2020 06:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81404 * 103.00112 * 2 1 4 4 H 1.09005 * 112.84308 * 45.33549 * 3 2 1 5 5 C 1.53780 * 113.69078 * 274.06841 * 3 2 1 6 6 C 1.53780 * 87.07844 * 220.00875 * 5 3 2 7 7 C 1.53775 * 87.08486 * 25.43251 * 6 5 3 8 8 H 1.08997 * 113.61490 * 89.11261 * 7 6 5 9 9 N 1.46501 * 113.69146 * 220.01050 * 7 6 5 10 10 C 1.39681 * 119.99874 * 252.53299 * 9 7 6 11 11 C 1.39337 * 119.95124 * 359.97438 * 10 9 7 12 12 C 1.38482 * 120.42030 * 179.97438 * 11 10 9 13 13 C 1.37682 * 120.33131 * 0.02604 * 12 11 10 14 14 C 1.40756 * 119.88848 * 359.97388 * 13 12 11 15 15 C 1.41409 * 120.20563 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99626 * 24.34103 * 15 14 13 17 17 C 1.39932 * 119.99858 * 204.33977 * 15 14 13 18 18 N 1.30824 * 120.00067 * 17.73989 * 17 15 14 19 19 Si 1.86798 * 119.99739 * 197.73746 * 17 15 14 20 20 H 1.48497 * 109.47363 * 60.00051 * 19 17 15 21 21 H 1.48496 * 109.47052 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47230 * 300.00198 * 19 17 15 23 23 C 1.38279 * 119.95267 * 179.72626 * 10 9 7 24 24 H 1.08997 * 109.47241 * 59.99486 * 1 2 3 25 25 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46472 * 299.99703 * 1 2 3 27 27 H 1.09000 * 113.61155 * 334.55826 * 5 3 2 28 28 H 1.08999 * 113.61497 * 105.45740 * 5 3 2 29 29 H 1.09008 * 113.61090 * 270.88455 * 6 5 3 30 30 H 1.08996 * 113.68918 * 139.99859 * 6 5 3 31 31 H 0.96997 * 119.99940 * 72.53660 * 9 7 6 32 32 H 1.07994 * 119.78724 * 359.96090 * 11 10 9 33 33 H 1.08001 * 119.83189 * 180.02562 * 12 11 10 34 34 H 1.07995 * 120.05968 * 179.97438 * 13 12 11 35 35 H 0.97003 * 119.99905 * 179.97438 * 18 17 15 36 36 H 1.08004 * 120.15756 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6293 2.3387 0.7145 5 6 2.2638 2.3921 -1.4047 6 6 3.4963 3.1807 -0.9317 7 6 3.7311 2.0513 0.0852 8 1 4.3502 1.2403 -0.2982 9 7 4.1656 2.5254 1.4016 10 6 5.4872 2.3344 1.8114 11 6 6.3913 1.6923 0.9676 12 6 7.7040 1.4983 1.3639 13 6 8.1302 1.9376 2.5971 14 6 7.2282 2.5878 3.4602 15 6 7.6589 3.0422 4.7282 16 1 8.7032 3.2592 4.8979 17 6 6.7320 3.2107 5.7629 18 7 5.5583 2.6376 5.6895 19 14 7.1708 4.2539 7.2490 20 1 7.4733 5.6396 6.8092 21 1 6.0267 4.2731 8.1955 22 1 8.3614 3.6779 7.9241 23 6 5.8978 2.7872 3.0517 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 2.4818 1.6742 -2.1953 28 1 1.4023 3.0212 -1.6285 29 1 3.2518 4.1384 -0.4719 30 1 4.2805 3.2605 -1.6844 31 1 3.5356 2.9719 1.9885 32 1 6.0662 1.3437 -0.0014 33 1 8.3968 0.9998 0.7021 34 1 9.1547 1.7836 2.9018 35 1 4.9160 2.7541 6.4069 36 1 5.1988 3.2882 3.7051 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425372652.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:08 Heat of formation + Delta-G solvation = 23.173216 kcal Electronic energy + Delta-G solvation = -17086.991993 eV Core-core repulsion = 14468.669008 eV Total energy + Delta-G solvation = -2618.322986 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.38850 -38.93758 -35.77441 -34.45128 -31.35445 -29.85902 -29.45003 -27.17576 -26.71897 -25.32872 -22.98489 -21.78854 -20.68373 -19.17385 -18.07520 -17.30141 -17.03562 -16.44912 -16.24156 -15.58366 -14.84952 -14.66963 -14.56295 -14.31805 -14.07747 -14.00956 -13.81859 -13.53534 -13.34572 -12.92886 -12.78855 -12.59064 -12.30029 -12.09120 -12.01773 -11.53490 -11.36688 -11.28238 -11.06244 -10.80198 -10.44688 -9.25310 -8.67847 -8.61832 -7.91857 -6.32053 0.76917 1.09359 1.33279 1.38449 1.49731 1.59518 1.66944 2.23210 2.77519 2.85476 3.38140 3.53857 3.82027 3.87391 3.98939 4.32502 4.35514 4.46660 4.52582 4.58933 4.80372 4.85310 4.86839 4.97238 4.99357 5.05544 5.19963 5.29029 5.32511 5.47334 5.60741 5.95197 6.10363 6.21288 6.26676 6.57890 6.93550 7.02683 7.06028 7.23987 8.38537 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.023812 B = 0.004812 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.617918 B = 5817.701042 C = 6359.258109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 S -0.315 6.315 3 C -0.078 4.078 4 H 0.107 0.893 5 C -0.105 4.105 6 C -0.147 4.147 7 C 0.156 3.844 8 H 0.095 0.905 9 N -0.739 5.739 10 C 0.222 3.778 11 C -0.303 4.303 12 C -0.062 4.062 13 C -0.285 4.285 14 C 0.109 3.891 15 C -0.506 4.506 16 H 0.072 0.928 17 C 0.038 3.962 18 N -0.823 5.823 19 Si 0.980 3.020 20 H -0.261 1.261 21 H -0.267 1.267 22 H -0.260 1.260 23 C -0.259 4.259 24 H 0.093 0.907 25 H 0.108 0.892 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.392 0.608 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.090 0.910 35 H 0.285 0.715 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.341 0.462 -10.652 15.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 S -0.086 6.086 3 C -0.208 4.208 4 H 0.126 0.874 5 C -0.146 4.146 6 C -0.188 4.188 7 C 0.048 3.952 8 H 0.112 0.888 9 N -0.369 5.369 10 C 0.121 3.879 11 C -0.325 4.325 12 C -0.081 4.081 13 C -0.306 4.306 14 C 0.106 3.894 15 C -0.535 4.535 16 H 0.090 0.910 17 C -0.177 4.177 18 N -0.449 5.449 19 Si 0.800 3.200 20 H -0.185 1.185 21 H -0.192 1.192 22 H -0.185 1.185 23 C -0.283 4.283 24 H 0.112 0.888 25 H 0.127 0.873 26 H 0.097 0.903 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.227 0.773 32 H 0.128 0.872 33 H 0.136 0.864 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.911 -0.597 -10.671 15.273 hybrid contribution -0.717 1.292 1.280 1.955 sum -11.628 0.695 -9.391 14.963 Atomic orbital electron populations 1.23372 0.91182 1.07236 1.05733 1.87284 1.10840 1.12730 1.97788 1.25344 0.99889 0.92892 1.02650 0.87438 1.23014 0.98931 0.98964 0.93653 1.23421 0.98814 0.98014 0.98540 1.22247 0.91774 0.97093 0.84041 0.88753 1.44462 1.08018 1.66272 1.18175 1.17743 0.84705 0.93092 0.92359 1.20232 0.94426 1.16439 1.01452 1.20643 0.95218 0.97135 0.95099 1.21021 0.99416 1.12017 0.98152 1.17711 0.91812 0.87433 0.92406 1.19797 0.95679 1.41995 0.96063 0.90964 1.26715 0.94000 0.94386 1.02566 1.69926 1.07413 1.33856 1.33690 0.85302 0.79003 0.79150 0.76501 1.18524 1.19174 1.18471 1.20659 0.98164 1.13444 0.96007 0.88826 0.87332 0.90303 0.88210 0.88416 0.89485 0.90138 0.77345 0.87168 0.86429 0.89176 0.90460 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 10.76 113.37 1.22 -0.58 16 2 S -0.31 -8.19 22.18 -56.49 -1.25 -9.44 16 3 C -0.08 -1.87 4.02 31.12 0.13 -1.75 16 4 H 0.11 2.48 8.12 -2.38 -0.02 2.46 16 5 C -0.11 -1.92 7.67 31.12 0.24 -1.68 16 6 C -0.15 -3.37 7.88 31.12 0.25 -3.13 16 7 C 0.16 4.67 3.63 45.52 0.17 4.83 16 8 H 0.09 3.13 6.08 -2.39 -0.01 3.12 16 9 N -0.74 -27.98 5.53 -316.64 -1.75 -29.73 16 10 C 0.22 10.52 6.64 38.16 0.25 10.77 16 11 C -0.30 -13.80 9.27 22.59 0.21 -13.59 16 12 C -0.06 -2.91 10.01 22.20 0.22 -2.69 16 13 C -0.29 -15.02 9.79 22.75 0.22 -14.79 16 14 C 0.11 6.25 5.57 -21.31 -0.12 6.13 16 15 C -0.51 -28.69 9.05 23.46 0.21 -28.48 16 16 H 0.07 3.96 7.91 -2.91 -0.02 3.94 16 17 C 0.04 2.00 5.14 85.25 0.44 2.44 16 18 N -0.82 -44.60 10.96 21.82 0.24 -44.36 16 19 Si 0.98 39.53 29.59 68.60 2.03 41.56 16 20 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 21 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 22 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 23 C -0.26 -14.12 8.53 22.86 0.20 -13.92 16 24 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.10 1.75 8.10 -2.39 -0.02 1.73 16 28 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 31 H 0.39 14.30 8.73 -92.71 -0.81 13.49 16 32 H 0.11 4.42 6.03 -2.91 -0.02 4.41 16 33 H 0.12 4.63 8.06 -2.91 -0.02 4.60 16 34 H 0.09 4.53 8.06 -2.91 -0.02 4.50 16 35 H 0.28 13.98 8.30 -92.71 -0.77 13.21 16 36 H 0.10 5.67 6.16 -2.91 -0.02 5.66 16 Total: -1.00 -63.84 311.96 3.16 -60.68 By element: Atomic # 1 Polarization: 37.46 SS G_CDS: 0.27 Total: 37.73 kcal Atomic # 6 Polarization: -60.06 SS G_CDS: 3.63 Total: -56.43 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -1.51 Total: -74.09 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Atomic # 16 Polarization: -8.19 SS G_CDS: -1.25 Total: -9.44 kcal Total: -63.84 3.16 -60.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425372652.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.849 kcal (2) G-P(sol) polarization free energy of solvation -63.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds