Wall clock time and date at job start Mon Mar 30 2020 06:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81400 * 102.99679 * 2 1 4 4 H 1.08995 * 112.85044 * 43.80888 * 3 2 1 5 5 C 1.53781 * 113.61624 * 272.49579 * 3 2 1 6 6 C 1.53782 * 87.08189 * 220.02262 * 5 3 2 7 7 C 1.53778 * 113.61113 * 174.99865 * 3 2 1 8 8 H 1.09001 * 113.61779 * 254.61087 * 7 3 2 9 9 N 1.46501 * 113.61450 * 25.43462 * 7 3 2 10 10 C 1.39691 * 120.00038 * 204.99524 * 9 7 3 11 11 C 1.39338 * 119.95075 * 0.02562 * 10 9 7 12 12 C 1.38474 * 120.42476 * 179.97438 * 11 10 9 13 13 C 1.37683 * 120.32718 * 359.97438 * 12 11 10 14 14 C 1.40754 * 119.89328 * 0.02562 * 13 12 11 15 15 C 1.41407 * 120.21075 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99869 * 206.67489 * 15 14 13 17 17 C 1.39926 * 119.99881 * 26.67414 * 15 14 13 18 18 N 1.30832 * 120.00040 * 25.18406 * 17 15 14 19 19 Si 1.86806 * 120.00059 * 205.18388 * 17 15 14 20 20 H 1.48494 * 109.47279 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.47038 * 300.00209 * 19 17 15 22 22 H 1.48498 * 109.46862 * 59.99768 * 19 17 15 23 23 C 1.38280 * 119.95274 * 180.25706 * 10 9 7 24 24 H 1.09001 * 109.46939 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47037 * 300.00153 * 1 2 3 26 26 H 1.09000 * 109.46994 * 60.00439 * 1 2 3 27 27 H 1.09001 * 113.61290 * 334.56892 * 5 3 2 28 28 H 1.08989 * 113.61392 * 105.38589 * 5 3 2 29 29 H 1.09001 * 113.61416 * 270.88132 * 6 5 3 30 30 H 1.08997 * 113.61464 * 139.97845 * 6 5 3 31 31 H 0.97000 * 120.00490 * 24.99867 * 9 7 3 32 32 H 1.08006 * 119.78717 * 359.97436 * 11 10 9 33 33 H 1.08004 * 119.83972 * 179.97438 * 12 11 10 34 34 H 1.08003 * 120.05935 * 180.02562 * 13 12 11 35 35 H 0.96992 * 120.00090 * 5.83262 * 18 17 15 36 36 H 1.07995 * 120.16162 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6109 2.3430 0.6953 5 6 2.3008 2.3816 -1.4077 6 6 3.5206 3.1738 -0.9083 7 6 3.7283 2.0520 0.1228 8 1 4.0258 2.4121 1.1077 9 7 4.5735 0.9582 -0.3623 10 6 5.8730 0.8093 0.1283 11 6 6.3640 1.7014 1.0794 12 6 7.6504 1.5627 1.5728 13 6 8.4588 0.5404 1.1288 14 6 7.9766 -0.3685 0.1683 15 6 8.8013 -1.4206 -0.2928 16 1 8.6455 -1.8371 -1.2769 17 6 9.8192 -1.9219 0.5261 18 7 9.7278 -1.8096 1.8263 19 14 11.3087 -2.7516 -0.2373 20 1 12.2352 -3.1911 0.8367 21 1 10.8687 -3.9308 -1.0254 22 1 12.0064 -1.7919 -1.1302 23 6 6.6718 -0.2203 -0.3342 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 2.5395 1.6579 -2.1870 28 1 1.4450 3.0078 -1.6593 29 1 3.2643 4.1349 -0.4624 30 1 4.3237 3.2470 -1.6416 31 1 4.2310 0.3373 -1.0241 32 1 5.7371 2.5063 1.4341 33 1 8.0215 2.2598 2.3095 34 1 9.4612 0.4360 1.5169 35 1 8.9182 -1.4561 2.2268 36 1 6.2938 -0.9099 -1.0744 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425372654.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:12 Heat of formation + Delta-G solvation = 34.522238 kcal Electronic energy + Delta-G solvation = -17101.012500 eV Core-core repulsion = 14483.181645 eV Total energy + Delta-G solvation = -2617.830855 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.31566 -37.40308 -34.29265 -32.34131 -29.62183 -29.06032 -27.41474 -25.81321 -25.22901 -24.40875 -21.05759 -20.62388 -19.08843 -17.79303 -16.59749 -16.41689 -14.96806 -14.74802 -14.59875 -14.11831 -13.79911 -13.74248 -13.50451 -13.26109 -13.13519 -12.60906 -12.46351 -12.09132 -11.83517 -11.40541 -11.23830 -11.01346 -10.68164 -10.47924 -10.33671 -10.16572 -9.84456 -9.82582 -9.29608 -9.08087 -8.75409 -7.65940 -7.52487 -7.08387 -6.34717 -4.33844 1.65861 2.56158 2.91944 3.10749 3.22995 3.37979 3.43883 4.01219 4.12698 4.39772 4.50133 4.69883 4.90129 4.95993 4.98997 5.02835 5.39166 5.54138 5.58705 5.69369 5.73178 5.95145 6.01368 6.15740 6.24378 6.49238 6.89919 6.98045 7.05571 7.27664 7.64492 7.78225 7.86519 8.02390 8.07363 8.38569 8.54826 8.62962 8.93391 9.07484 10.19157 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.030426 B = 0.004445 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.034803 B = 6297.879003 C = 6707.773624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.230 6.230 3 C -0.101 4.101 4 H 0.107 0.893 5 C -0.125 4.125 6 C -0.160 4.160 7 C 0.173 3.827 8 H 0.097 0.903 9 N -0.734 5.734 10 C 0.237 3.763 11 C -0.311 4.311 12 C -0.055 4.055 13 C -0.251 4.251 14 C 0.130 3.870 15 C -0.527 4.527 16 H 0.072 0.928 17 C 0.040 3.960 18 N -0.800 5.800 19 Si 1.064 2.936 20 H -0.275 1.275 21 H -0.277 1.277 22 H -0.276 1.276 23 C -0.290 4.290 24 H 0.097 0.903 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.394 0.606 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.300 0.700 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.856 6.233 -3.529 15.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S -0.002 6.002 3 C -0.231 4.231 4 H 0.126 0.874 5 C -0.165 4.165 6 C -0.201 4.201 7 C 0.063 3.937 8 H 0.115 0.885 9 N -0.366 5.366 10 C 0.139 3.861 11 C -0.334 4.334 12 C -0.075 4.075 13 C -0.272 4.272 14 C 0.126 3.874 15 C -0.556 4.556 16 H 0.090 0.910 17 C -0.181 4.181 18 N -0.424 5.424 19 Si 0.888 3.112 20 H -0.200 1.200 21 H -0.203 1.203 22 H -0.201 1.201 23 C -0.313 4.313 24 H 0.116 0.884 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.109 0.891 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.229 0.771 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.775 4.755 -2.972 13.042 hybrid contribution -2.742 1.582 -0.535 3.210 sum -14.516 6.337 -3.507 16.223 Atomic orbital electron populations 1.23391 0.96097 1.06108 1.04394 1.87284 1.05117 1.10260 1.97520 1.25438 1.01795 0.94498 1.01335 0.87442 1.23192 0.98766 0.99390 0.95137 1.23482 0.98324 0.97914 1.00366 1.21358 0.85944 0.88250 0.98133 0.88550 1.44152 1.12203 1.31901 1.48364 1.17486 0.82694 0.93683 0.92253 1.19850 0.98341 1.05748 1.09432 1.20364 0.93556 0.96436 0.97098 1.21008 0.99744 0.99193 1.07231 1.17380 0.89837 0.90891 0.89251 1.20500 1.14405 1.16954 1.03728 0.90958 1.26933 1.01647 0.95221 0.94309 1.70424 1.30748 1.29655 1.11551 0.83662 0.74822 0.76647 0.76057 1.19983 1.20283 1.20108 1.20345 0.95504 1.03435 1.12054 0.88424 0.90890 0.90884 0.89114 0.91438 0.89723 0.90157 0.77057 0.89351 0.89449 0.88114 0.88685 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 10.76 101.05 1.09 -0.14 16 2 S -0.23 -3.10 20.71 -107.50 -2.23 -5.33 16 3 C -0.10 -1.21 4.23 -25.92 -0.11 -1.32 16 4 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 5 C -0.12 -1.35 7.55 -25.92 -0.20 -1.55 16 6 C -0.16 -1.92 7.88 -25.92 -0.20 -2.13 16 7 C 0.17 2.54 4.01 -67.12 -0.27 2.27 16 8 H 0.10 1.49 6.12 -51.93 -0.32 1.17 16 9 N -0.73 -13.35 4.88 -51.43 -0.25 -13.60 16 10 C 0.24 5.37 6.64 -83.85 -0.56 4.82 16 11 C -0.31 -7.03 9.27 -39.09 -0.36 -7.39 16 12 C -0.06 -1.32 10.01 -39.70 -0.40 -1.72 16 13 C -0.25 -6.67 7.96 -38.83 -0.31 -6.98 16 14 C 0.13 3.57 5.27 -106.85 -0.56 3.01 16 15 C -0.53 -14.57 8.98 -37.74 -0.34 -14.91 16 16 H 0.07 1.95 7.96 -52.49 -0.42 1.53 16 17 C 0.04 1.06 4.93 -17.35 -0.09 0.98 16 18 N -0.80 -22.02 12.35 55.55 0.69 -21.34 16 19 Si 1.06 22.29 30.00 -169.99 -5.10 17.19 16 20 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 23 C -0.29 -7.37 9.63 -38.67 -0.37 -7.74 16 24 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 25 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 26 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 27 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.39 7.01 7.74 -40.82 -0.32 6.70 16 32 H 0.09 1.78 6.03 -52.48 -0.32 1.46 16 33 H 0.09 1.86 8.06 -52.48 -0.42 1.43 16 34 H 0.10 2.76 6.57 -52.48 -0.34 2.42 16 35 H 0.30 8.51 6.73 -40.82 -0.27 8.23 16 36 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 308.72 15.07 4.65 4.65 Total: -1.00 -28.75 308.72 -9.92 -38.68 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -5.01 Total: 12.55 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: -2.68 Total: -32.80 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.44 Total: -34.94 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.10 Total: 17.19 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -2.23 Total: -5.33 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.75 -9.92 -38.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425372654.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.197 kcal (2) G-P(sol) polarization free energy of solvation -28.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds