Wall clock time and date at job start Mon Mar 30 2020 06:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81400 * 102.99679 * 2 1 4 4 H 1.08995 * 112.85044 * 43.80888 * 3 2 1 5 5 C 1.53781 * 113.61624 * 272.49579 * 3 2 1 6 6 C 1.53782 * 87.08189 * 220.02262 * 5 3 2 7 7 C 1.53778 * 113.61113 * 174.99865 * 3 2 1 8 8 H 1.09001 * 113.61779 * 254.61087 * 7 3 2 9 9 N 1.46501 * 113.61450 * 25.43462 * 7 3 2 10 10 C 1.39691 * 120.00038 * 204.99524 * 9 7 3 11 11 C 1.39338 * 119.95075 * 0.02562 * 10 9 7 12 12 C 1.38474 * 120.42476 * 179.97438 * 11 10 9 13 13 C 1.37683 * 120.32718 * 359.97438 * 12 11 10 14 14 C 1.40754 * 119.89328 * 0.02562 * 13 12 11 15 15 C 1.41407 * 120.21075 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99869 * 206.67489 * 15 14 13 17 17 C 1.39926 * 119.99881 * 26.67414 * 15 14 13 18 18 N 1.30832 * 120.00040 * 25.18406 * 17 15 14 19 19 Si 1.86806 * 120.00059 * 205.18388 * 17 15 14 20 20 H 1.48494 * 109.47279 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.47038 * 300.00209 * 19 17 15 22 22 H 1.48498 * 109.46862 * 59.99768 * 19 17 15 23 23 C 1.38280 * 119.95274 * 180.25706 * 10 9 7 24 24 H 1.09001 * 109.46939 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47037 * 300.00153 * 1 2 3 26 26 H 1.09000 * 109.46994 * 60.00439 * 1 2 3 27 27 H 1.09001 * 113.61290 * 334.56892 * 5 3 2 28 28 H 1.08989 * 113.61392 * 105.38589 * 5 3 2 29 29 H 1.09001 * 113.61416 * 270.88132 * 6 5 3 30 30 H 1.08997 * 113.61464 * 139.97845 * 6 5 3 31 31 H 0.97000 * 120.00490 * 24.99867 * 9 7 3 32 32 H 1.08006 * 119.78717 * 359.97436 * 11 10 9 33 33 H 1.08004 * 119.83972 * 179.97438 * 12 11 10 34 34 H 1.08003 * 120.05935 * 180.02562 * 13 12 11 35 35 H 0.96992 * 120.00090 * 5.83262 * 18 17 15 36 36 H 1.07995 * 120.16162 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6109 2.3430 0.6953 5 6 2.3008 2.3816 -1.4077 6 6 3.5206 3.1738 -0.9083 7 6 3.7283 2.0520 0.1228 8 1 4.0258 2.4121 1.1077 9 7 4.5735 0.9582 -0.3623 10 6 5.8730 0.8093 0.1283 11 6 6.3640 1.7014 1.0794 12 6 7.6504 1.5627 1.5728 13 6 8.4588 0.5404 1.1288 14 6 7.9766 -0.3685 0.1683 15 6 8.8013 -1.4206 -0.2928 16 1 8.6455 -1.8371 -1.2769 17 6 9.8192 -1.9219 0.5261 18 7 9.7278 -1.8096 1.8263 19 14 11.3087 -2.7516 -0.2373 20 1 12.2352 -3.1911 0.8367 21 1 10.8687 -3.9308 -1.0254 22 1 12.0064 -1.7919 -1.1302 23 6 6.6718 -0.2203 -0.3342 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 2.5395 1.6579 -2.1870 28 1 1.4450 3.0078 -1.6593 29 1 3.2643 4.1349 -0.4624 30 1 4.3237 3.2470 -1.6416 31 1 4.2310 0.3373 -1.0241 32 1 5.7371 2.5063 1.4341 33 1 8.0215 2.2598 2.3095 34 1 9.4612 0.4360 1.5169 35 1 8.9182 -1.4561 2.2268 36 1 6.2938 -0.9099 -1.0744 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425372654.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:12 Heat of formation + Delta-G solvation = 19.565588 kcal Electronic energy + Delta-G solvation = -17101.661069 eV Core-core repulsion = 14483.181645 eV Total energy + Delta-G solvation = -2618.479424 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.58803 -39.13822 -36.12038 -34.05894 -31.58615 -29.85864 -29.09473 -27.13053 -26.72997 -25.74159 -22.91501 -22.38080 -20.42813 -19.53299 -17.93331 -17.75543 -16.72311 -16.13186 -15.96158 -15.64380 -15.28398 -15.02167 -14.60420 -14.47578 -14.30453 -14.03817 -13.96332 -13.66738 -13.36599 -13.07782 -12.78135 -12.29226 -12.12921 -11.95727 -11.87234 -11.71817 -11.35980 -11.16385 -10.92820 -10.75240 -10.54043 -9.54153 -9.14292 -8.69545 -8.09146 -6.44075 0.73815 0.99731 1.17347 1.51336 1.67431 1.68965 1.81552 2.36277 2.63829 2.74697 3.36375 3.52675 3.67248 3.89976 3.99970 4.32670 4.33936 4.36467 4.40053 4.57704 4.68799 4.82417 4.85976 4.89866 4.97700 5.03085 5.06074 5.14202 5.28399 5.39664 5.71897 5.75329 5.88909 6.02490 6.14605 6.38164 6.73895 6.88290 6.95572 7.11613 8.09507 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.030426 B = 0.004445 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.034803 B = 6297.879003 C = 6707.773624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.312 6.312 3 C -0.078 4.078 4 H 0.133 0.867 5 C -0.114 4.114 6 C -0.149 4.149 7 C 0.148 3.852 8 H 0.092 0.908 9 N -0.726 5.726 10 C 0.248 3.752 11 C -0.305 4.305 12 C -0.054 4.054 13 C -0.279 4.279 14 C 0.105 3.895 15 C -0.566 4.566 16 H 0.065 0.935 17 C 0.005 3.995 18 N -0.820 5.820 19 Si 1.118 2.882 20 H -0.269 1.269 21 H -0.259 1.259 22 H -0.264 1.264 23 C -0.315 4.315 24 H 0.103 0.897 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.063 0.937 31 H 0.395 0.605 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.082 0.918 35 H 0.282 0.718 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.948 7.954 -3.866 18.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.084 6.084 3 C -0.208 4.208 4 H 0.151 0.849 5 C -0.154 4.154 6 C -0.189 4.189 7 C 0.040 3.960 8 H 0.109 0.891 9 N -0.356 5.356 10 C 0.147 3.853 11 C -0.328 4.328 12 C -0.073 4.073 13 C -0.299 4.299 14 C 0.101 3.899 15 C -0.595 4.595 16 H 0.083 0.917 17 C -0.211 4.211 18 N -0.443 5.443 19 Si 0.934 3.066 20 H -0.194 1.194 21 H -0.184 1.184 22 H -0.189 1.189 23 C -0.340 4.340 24 H 0.122 0.878 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.096 0.904 28 H 0.116 0.884 29 H 0.132 0.868 30 H 0.082 0.918 31 H 0.231 0.769 32 H 0.139 0.861 33 H 0.133 0.867 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.939 6.507 -3.321 15.737 hybrid contribution -2.357 1.174 -0.418 2.667 sum -16.296 7.681 -3.739 18.400 Atomic orbital electron populations 1.23394 0.91548 1.07038 1.05845 1.87604 1.10258 1.12829 1.97729 1.25383 0.99578 0.93129 1.02687 0.84930 1.23124 0.99232 0.98948 0.94052 1.23443 0.98298 0.98265 0.98937 1.21738 0.87332 0.88293 0.98642 0.89057 1.44195 1.10863 1.32842 1.47704 1.17548 0.84165 0.92320 0.91310 1.20225 0.98097 1.06040 1.08408 1.20701 0.93779 0.95815 0.97011 1.20934 0.99688 1.00789 1.08529 1.17710 0.90795 0.91365 0.89992 1.20715 1.16485 1.18313 1.03967 0.91669 1.28414 1.03972 0.94768 0.93934 1.70545 1.30033 1.31467 1.12292 0.83019 0.71438 0.76465 0.75647 1.19386 1.18373 1.18872 1.20430 0.95708 1.04927 1.12896 0.87822 0.89503 0.89260 0.90385 0.88448 0.86831 0.91782 0.76926 0.86075 0.86667 0.89976 0.90591 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 10.76 113.37 1.22 -0.50 16 2 S -0.31 -7.92 20.71 -56.49 -1.17 -9.09 16 3 C -0.08 -1.63 4.23 31.12 0.13 -1.50 16 4 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 5 C -0.11 -2.06 7.55 31.12 0.23 -1.82 16 6 C -0.15 -3.07 7.88 31.12 0.25 -2.83 16 7 C 0.15 3.98 4.01 45.52 0.18 4.16 16 8 H 0.09 2.54 6.12 -2.39 -0.01 2.53 16 9 N -0.73 -25.84 4.88 -316.62 -1.54 -27.38 16 10 C 0.25 11.23 6.64 38.16 0.25 11.49 16 11 C -0.31 -13.40 9.27 22.59 0.21 -13.19 16 12 C -0.05 -2.58 10.01 22.19 0.22 -2.35 16 13 C -0.28 -15.34 7.96 22.75 0.18 -15.16 16 14 C 0.10 6.01 5.27 -21.31 -0.11 5.90 16 15 C -0.57 -32.84 8.98 23.46 0.21 -32.63 16 16 H 0.07 3.72 7.96 -2.91 -0.02 3.69 16 17 C 0.00 0.26 4.93 85.25 0.42 0.68 16 18 N -0.82 -47.00 12.35 21.82 0.27 -46.73 16 19 Si 1.12 45.71 30.00 68.60 2.06 47.76 16 20 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 21 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 22 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 23 C -0.32 -16.65 9.63 22.86 0.22 -16.43 16 24 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.08 1.65 8.10 -2.39 -0.02 1.63 16 28 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.11 1.74 8.14 -2.39 -0.02 1.73 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.40 14.05 7.74 -92.71 -0.72 13.33 16 32 H 0.12 4.50 6.03 -2.91 -0.02 4.48 16 33 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 34 H 0.08 4.73 6.57 -2.91 -0.02 4.71 16 35 H 0.28 16.92 6.73 -92.71 -0.62 16.30 16 36 H 0.08 4.36 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -65.84 308.72 3.74 -62.10 By element: Atomic # 1 Polarization: 37.02 SS G_CDS: 0.50 Total: 37.52 kcal Atomic # 6 Polarization: -67.80 SS G_CDS: 3.62 Total: -64.18 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -1.28 Total: -74.11 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.06 Total: 47.76 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.17 Total: -9.09 kcal Total: -65.84 3.74 -62.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425372654.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.669 kcal (2) G-P(sol) polarization free energy of solvation -65.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds