Wall clock time and date at job start Mon Mar 30 2020 06:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81398 * 102.99957 * 2 1 4 4 H 1.09001 * 112.85140 * 313.30769 * 3 2 1 5 5 C 1.53785 * 113.61788 * 84.49869 * 3 2 1 6 6 C 1.53788 * 87.08027 * 139.98056 * 5 3 2 7 7 C 1.53777 * 87.07964 * 334.57173 * 6 5 3 8 8 H 1.08997 * 113.61570 * 270.87834 * 7 6 5 9 9 N 1.46502 * 113.61158 * 139.97883 * 7 6 5 10 10 C 1.39689 * 120.00106 * 107.50319 * 9 7 6 11 11 C 1.39335 * 119.94811 * 359.71553 * 10 9 7 12 12 C 1.38485 * 120.42085 * 179.76128 * 11 10 9 13 13 C 1.37681 * 120.32254 * 0.52587 * 12 11 10 14 14 C 1.40748 * 119.89852 * 359.73672 * 13 12 11 15 15 C 1.41402 * 120.21233 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00275 * 155.24119 * 15 14 13 17 17 C 1.39941 * 119.99991 * 335.24915 * 15 14 13 18 18 N 1.30835 * 119.99625 * 342.20034 * 17 15 14 19 19 Si 1.86792 * 120.00187 * 162.19994 * 17 15 14 20 20 H 1.48506 * 109.47333 * 94.65905 * 19 17 15 21 21 H 1.48501 * 109.47125 * 214.65973 * 19 17 15 22 22 H 1.48499 * 109.47357 * 334.65817 * 19 17 15 23 23 C 1.38275 * 119.95301 * 180.02562 * 10 9 7 24 24 H 1.09000 * 109.47503 * 300.00036 * 1 2 3 25 25 H 1.08997 * 109.46994 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46772 * 60.00365 * 1 2 3 27 27 H 1.08994 * 113.62327 * 254.53669 * 5 3 2 28 28 H 1.09009 * 113.60709 * 25.43884 * 5 3 2 29 29 H 1.09001 * 113.60954 * 89.12072 * 6 5 3 30 30 H 1.08998 * 113.61106 * 219.93671 * 6 5 3 31 31 H 0.97002 * 120.00082 * 287.50173 * 9 7 6 32 32 H 1.07997 * 119.79052 * 0.02562 * 11 10 9 33 33 H 1.08003 * 119.83365 * 180.26320 * 12 11 10 34 34 H 1.08003 * 120.05175 * 179.71370 * 13 12 11 35 35 H 0.97003 * 119.99439 * 180.02562 * 18 17 15 36 36 H 1.08006 * 120.16158 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6460 2.3349 -0.7309 5 6 2.2290 2.3982 1.4025 6 6 3.4730 3.1849 0.9567 7 6 3.7327 2.0510 -0.0491 8 1 4.3421 1.2417 0.3529 9 7 4.1993 2.5213 -1.3558 10 6 5.5305 2.3289 -1.7328 11 6 6.4152 1.6950 -0.8627 12 6 7.7358 1.4949 -1.2284 13 6 8.1918 1.9302 -2.4524 14 6 7.3112 2.5770 -3.3396 15 6 7.7726 3.0273 -4.5981 16 1 7.0781 3.1478 -5.4163 17 6 9.1291 3.3166 -4.7834 18 7 9.9038 3.5117 -3.7473 19 14 9.8338 3.4242 -6.5099 20 1 9.8275 4.8394 -6.9600 21 1 11.2275 2.9114 -6.5086 22 1 9.0068 2.6073 -7.4340 23 6 5.9700 2.7736 -2.9661 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 1.3624 3.0282 1.6024 28 1 2.4275 1.6837 2.2015 29 1 3.2401 4.1405 0.4870 30 1 4.2370 3.2682 1.7296 31 1 3.5838 2.9662 -1.9593 32 1 6.0677 1.3538 0.1012 33 1 8.4123 0.9986 -0.5483 34 1 9.2238 1.7759 -2.7312 35 1 10.8441 3.7126 -3.8758 36 1 5.2862 3.2692 -3.6394 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425372656.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:14 Heat of formation + Delta-G solvation = 37.904808 kcal Electronic energy + Delta-G solvation = -16911.769541 eV Core-core repulsion = 14294.085365 eV Total energy + Delta-G solvation = -2617.684176 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.13714 -37.24057 -34.13476 -32.46124 -29.72845 -29.08633 -27.63064 -25.78342 -25.19205 -24.10798 -20.98143 -20.31044 -19.41744 -17.51759 -16.65124 -15.98461 -15.35707 -14.85999 -14.53890 -14.41165 -13.81791 -13.43051 -13.18247 -13.07488 -12.94898 -12.64166 -12.34262 -12.07816 -11.73041 -11.48326 -11.27092 -11.01218 -10.87655 -10.57557 -10.44543 -10.30018 -9.85610 -9.71913 -9.29734 -9.18399 -8.70698 -7.68986 -7.35640 -6.68512 -6.20858 -4.28085 1.66654 2.53786 2.87797 3.11653 3.16777 3.24881 3.37628 3.99192 4.21221 4.37519 4.52446 4.73339 4.88410 4.96097 4.98444 5.02106 5.48844 5.52878 5.61742 5.68947 5.85711 5.95678 6.03079 6.29641 6.36031 6.58057 7.06128 7.07257 7.14530 7.36796 7.40991 7.79952 7.93574 8.17067 8.27451 8.52844 8.62102 8.81288 9.02705 9.14470 10.27654 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.037178 B = 0.003948 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.958957 B = 7091.282404 C = 7310.589119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.250 6.250 3 C -0.092 4.092 4 H 0.103 0.897 5 C -0.127 4.127 6 C -0.154 4.154 7 C 0.176 3.824 8 H 0.112 0.888 9 N -0.747 5.747 10 C 0.223 3.777 11 C -0.300 4.300 12 C -0.074 4.074 13 C -0.198 4.198 14 C 0.142 3.858 15 C -0.465 4.465 16 H 0.075 0.925 17 C 0.078 3.922 18 N -0.792 5.792 19 Si 0.905 3.095 20 H -0.272 1.272 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.287 4.287 24 H 0.073 0.927 25 H 0.097 0.903 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.388 0.612 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.278 0.722 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.192 -2.099 7.338 15.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.022 6.022 3 C -0.222 4.222 4 H 0.121 0.879 5 C -0.168 4.168 6 C -0.196 4.196 7 C 0.066 3.934 8 H 0.129 0.871 9 N -0.378 5.378 10 C 0.126 3.874 11 C -0.323 4.323 12 C -0.094 4.094 13 C -0.218 4.218 14 C 0.139 3.861 15 C -0.495 4.495 16 H 0.093 0.907 17 C -0.140 4.140 18 N -0.417 5.417 19 Si 0.729 3.271 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.311 4.311 24 H 0.092 0.908 25 H 0.115 0.885 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.222 0.778 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.132 0.868 35 H 0.089 0.911 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.259 -3.037 7.520 14.700 hybrid contribution -0.806 1.337 -1.006 1.857 sum -13.066 -1.700 6.515 14.698 Atomic orbital electron populations 1.23334 0.95309 1.06080 1.04561 1.87070 1.06175 1.11282 1.97629 1.25423 1.02176 0.93554 1.01033 0.87917 1.23090 0.99098 0.99479 0.95113 1.23488 0.97511 0.98781 0.99789 1.21926 0.89795 0.96171 0.85459 0.87081 1.44376 1.09093 1.67062 1.17249 1.17462 0.82439 0.94225 0.93318 1.19874 0.94661 1.17370 1.00373 1.20438 0.94021 0.98630 0.96269 1.21165 1.00453 1.05056 0.95164 1.17328 0.89958 0.86782 0.92081 1.19544 0.92933 1.39819 0.97194 0.90675 1.25886 0.97121 0.92498 0.98466 1.69867 1.06848 1.33456 1.31568 0.86369 0.78679 0.79158 0.82887 1.19702 1.20092 1.18484 1.20400 0.97946 1.16107 0.96649 0.90759 0.88452 0.90801 0.91047 0.88843 0.89725 0.90516 0.77824 0.89656 0.89625 0.86807 0.91074 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 10.76 101.05 1.09 -0.02 16 2 S -0.25 -3.22 22.17 -107.50 -2.38 -5.60 16 3 C -0.09 -1.12 4.03 -25.92 -0.10 -1.22 16 4 H 0.10 1.19 8.12 -51.93 -0.42 0.77 16 5 C -0.13 -1.32 7.67 -25.91 -0.20 -1.52 16 6 C -0.15 -1.92 7.88 -25.92 -0.20 -2.12 16 7 C 0.18 2.63 3.62 -67.12 -0.24 2.39 16 8 H 0.11 1.85 6.09 -51.93 -0.32 1.53 16 9 N -0.75 -13.39 5.53 -51.43 -0.28 -13.68 16 10 C 0.22 5.07 6.64 -83.86 -0.56 4.51 16 11 C -0.30 -6.93 9.27 -39.08 -0.36 -7.29 16 12 C -0.07 -1.82 10.02 -39.69 -0.40 -2.22 16 13 C -0.20 -5.33 8.69 -38.84 -0.34 -5.67 16 14 C 0.14 3.89 5.57 -106.85 -0.60 3.30 16 15 C -0.47 -12.69 9.05 -37.74 -0.34 -13.03 16 16 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 17 C 0.08 2.00 5.14 -17.34 -0.09 1.91 16 18 N -0.79 -20.97 10.97 55.55 0.61 -20.36 16 19 Si 0.90 19.03 29.59 -169.99 -5.03 14.00 16 20 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 21 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 23 C -0.29 -7.23 9.63 -38.68 -0.37 -7.61 16 24 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 25 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 0.94 8.10 -51.92 -0.42 0.52 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.39 6.37 8.74 -40.82 -0.36 6.01 16 32 H 0.09 1.78 6.03 -52.49 -0.32 1.46 16 33 H 0.09 1.88 8.06 -52.48 -0.42 1.45 16 34 H 0.11 3.16 6.17 -52.48 -0.32 2.83 16 35 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 36 H 0.09 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 311.98 15.07 4.70 4.70 Total: -1.00 -28.64 311.98 -10.19 -38.83 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -5.09 Total: 10.70 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: -2.72 Total: -28.59 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.32 Total: -34.04 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.38 Total: -5.60 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.64 -10.19 -38.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425372656.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.732 kcal (2) G-P(sol) polarization free energy of solvation -28.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds