Wall clock time and date at job start Mon Mar 30 2020 06:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81398 * 102.99957 * 2 1 4 4 H 1.09001 * 112.85140 * 313.30769 * 3 2 1 5 5 C 1.53785 * 113.61788 * 84.49869 * 3 2 1 6 6 C 1.53788 * 87.08027 * 139.98056 * 5 3 2 7 7 C 1.53777 * 87.07964 * 334.57173 * 6 5 3 8 8 H 1.08997 * 113.61570 * 270.87834 * 7 6 5 9 9 N 1.46502 * 113.61158 * 139.97883 * 7 6 5 10 10 C 1.39689 * 120.00106 * 107.50319 * 9 7 6 11 11 C 1.39335 * 119.94811 * 359.71553 * 10 9 7 12 12 C 1.38485 * 120.42085 * 179.76128 * 11 10 9 13 13 C 1.37681 * 120.32254 * 0.52587 * 12 11 10 14 14 C 1.40748 * 119.89852 * 359.73672 * 13 12 11 15 15 C 1.41402 * 120.21233 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00275 * 155.24119 * 15 14 13 17 17 C 1.39941 * 119.99991 * 335.24915 * 15 14 13 18 18 N 1.30835 * 119.99625 * 342.20034 * 17 15 14 19 19 Si 1.86792 * 120.00187 * 162.19994 * 17 15 14 20 20 H 1.48506 * 109.47333 * 94.65905 * 19 17 15 21 21 H 1.48501 * 109.47125 * 214.65973 * 19 17 15 22 22 H 1.48499 * 109.47357 * 334.65817 * 19 17 15 23 23 C 1.38275 * 119.95301 * 180.02562 * 10 9 7 24 24 H 1.09000 * 109.47503 * 300.00036 * 1 2 3 25 25 H 1.08997 * 109.46994 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46772 * 60.00365 * 1 2 3 27 27 H 1.08994 * 113.62327 * 254.53669 * 5 3 2 28 28 H 1.09009 * 113.60709 * 25.43884 * 5 3 2 29 29 H 1.09001 * 113.60954 * 89.12072 * 6 5 3 30 30 H 1.08998 * 113.61106 * 219.93671 * 6 5 3 31 31 H 0.97002 * 120.00082 * 287.50173 * 9 7 6 32 32 H 1.07997 * 119.79052 * 0.02562 * 11 10 9 33 33 H 1.08003 * 119.83365 * 180.26320 * 12 11 10 34 34 H 1.08003 * 120.05175 * 179.71370 * 13 12 11 35 35 H 0.97003 * 119.99439 * 180.02562 * 18 17 15 36 36 H 1.08006 * 120.16158 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6460 2.3349 -0.7309 5 6 2.2290 2.3982 1.4025 6 6 3.4730 3.1849 0.9567 7 6 3.7327 2.0510 -0.0491 8 1 4.3421 1.2417 0.3529 9 7 4.1993 2.5213 -1.3558 10 6 5.5305 2.3289 -1.7328 11 6 6.4152 1.6950 -0.8627 12 6 7.7358 1.4949 -1.2284 13 6 8.1918 1.9302 -2.4524 14 6 7.3112 2.5770 -3.3396 15 6 7.7726 3.0273 -4.5981 16 1 7.0781 3.1478 -5.4163 17 6 9.1291 3.3166 -4.7834 18 7 9.9038 3.5117 -3.7473 19 14 9.8338 3.4242 -6.5099 20 1 9.8275 4.8394 -6.9600 21 1 11.2275 2.9114 -6.5086 22 1 9.0068 2.6073 -7.4340 23 6 5.9700 2.7736 -2.9661 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 1.3624 3.0282 1.6024 28 1 2.4275 1.6837 2.2015 29 1 3.2401 4.1405 0.4870 30 1 4.2370 3.2682 1.7296 31 1 3.5838 2.9662 -1.9593 32 1 6.0677 1.3538 0.1012 33 1 8.4123 0.9986 -0.5483 34 1 9.2238 1.7759 -2.7312 35 1 10.8441 3.7126 -3.8758 36 1 5.2862 3.2692 -3.6394 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425372656.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:14 Heat of formation + Delta-G solvation = 23.026362 kcal Electronic energy + Delta-G solvation = -16912.414719 eV Core-core repulsion = 14294.085365 eV Total energy + Delta-G solvation = -2618.329354 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.40302 -38.94966 -35.92659 -34.18528 -31.68368 -29.82614 -29.31464 -27.18443 -26.71743 -25.37830 -22.77590 -22.07816 -20.62702 -19.27174 -17.90799 -17.39701 -17.06213 -16.44041 -16.25667 -15.57522 -14.85806 -14.68511 -14.60940 -14.32724 -14.01181 -13.95624 -13.82354 -13.62933 -13.26209 -13.04466 -12.81169 -12.57925 -12.24926 -12.17286 -11.96413 -11.60191 -11.42406 -11.19320 -11.04146 -10.78735 -10.41320 -9.33989 -8.67402 -8.60676 -7.95584 -6.32326 0.77285 1.04842 1.33795 1.39467 1.52676 1.59517 1.67857 2.23225 2.77075 2.81514 3.37453 3.54135 3.81641 3.88062 3.97731 4.34379 4.37042 4.47456 4.49211 4.59064 4.74803 4.84504 4.88418 4.97333 5.05370 5.13250 5.16495 5.20349 5.36297 5.41662 5.59839 5.93970 6.01658 6.19853 6.30896 6.62200 6.88559 7.01195 7.02818 7.23756 8.37812 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.037178 B = 0.003948 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.958957 B = 7091.282404 C = 7310.589119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 S -0.314 6.314 3 C -0.075 4.075 4 H 0.112 0.888 5 C -0.108 4.108 6 C -0.149 4.149 7 C 0.156 3.844 8 H 0.094 0.906 9 N -0.738 5.738 10 C 0.235 3.765 11 C -0.304 4.304 12 C -0.075 4.075 13 C -0.231 4.231 14 C 0.113 3.887 15 C -0.504 4.504 16 H 0.072 0.928 17 C 0.036 3.964 18 N -0.823 5.823 19 Si 0.982 3.018 20 H -0.261 1.261 21 H -0.265 1.265 22 H -0.260 1.260 23 C -0.311 4.311 24 H 0.091 0.909 25 H 0.108 0.892 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.396 0.604 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.287 0.713 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.037 -1.828 8.037 17.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 S -0.086 6.086 3 C -0.205 4.205 4 H 0.130 0.870 5 C -0.148 4.148 6 C -0.191 4.191 7 C 0.049 3.951 8 H 0.112 0.888 9 N -0.368 5.368 10 C 0.134 3.866 11 C -0.327 4.327 12 C -0.094 4.094 13 C -0.252 4.252 14 C 0.111 3.889 15 C -0.534 4.534 16 H 0.090 0.910 17 C -0.179 4.179 18 N -0.449 5.449 19 Si 0.802 3.198 20 H -0.186 1.186 21 H -0.189 1.189 22 H -0.184 1.184 23 C -0.335 4.335 24 H 0.110 0.890 25 H 0.126 0.874 26 H 0.099 0.901 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.231 0.769 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.156 -2.763 8.259 16.621 hybrid contribution -0.375 1.209 -1.099 1.676 sum -14.532 -1.554 7.160 16.275 Atomic orbital electron populations 1.23373 0.91144 1.07228 1.05795 1.87314 1.10835 1.12604 1.97813 1.25315 0.99642 0.92962 1.02589 0.86971 1.23023 0.98865 0.98968 0.93913 1.23438 0.98656 0.98154 0.98814 1.22227 0.91560 0.97042 0.84319 0.88811 1.44433 1.07338 1.66434 1.18630 1.17511 0.84474 0.92388 0.92188 1.20165 0.94216 1.16927 1.01395 1.20721 0.95127 0.97868 0.95687 1.21091 0.99857 1.07546 0.96711 1.17694 0.91210 0.87337 0.92703 1.19808 0.94286 1.41797 0.97459 0.90976 1.26765 0.96811 0.91399 1.02875 1.69924 1.07474 1.33652 1.33862 0.85215 0.77995 0.79509 0.77078 1.18614 1.18948 1.18386 1.20525 0.97525 1.17433 0.98031 0.88977 0.87386 0.90050 0.88369 0.88384 0.89334 0.90543 0.76903 0.87263 0.87478 0.88603 0.90253 0.89078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 10.76 113.37 1.22 -0.37 16 2 S -0.31 -7.51 22.17 -56.49 -1.25 -8.76 16 3 C -0.08 -1.65 4.03 31.12 0.13 -1.52 16 4 H 0.11 2.25 8.12 -2.39 -0.02 2.23 16 5 C -0.11 -1.85 7.67 31.12 0.24 -1.61 16 6 C -0.15 -3.33 7.88 31.12 0.25 -3.09 16 7 C 0.16 4.41 3.62 45.51 0.16 4.58 16 8 H 0.09 3.01 6.09 -2.39 -0.01 2.99 16 9 N -0.74 -25.76 5.53 -316.64 -1.75 -27.51 16 10 C 0.24 10.70 6.64 38.16 0.25 10.95 16 11 C -0.30 -13.98 9.27 22.59 0.21 -13.77 16 12 C -0.08 -3.72 10.02 22.20 0.22 -3.50 16 13 C -0.23 -12.96 8.69 22.75 0.20 -12.76 16 14 C 0.11 6.49 5.57 -21.31 -0.12 6.37 16 15 C -0.50 -28.57 9.05 23.46 0.21 -28.36 16 16 H 0.07 3.95 7.91 -2.91 -0.02 3.93 16 17 C 0.04 1.91 5.14 85.25 0.44 2.35 16 18 N -0.82 -44.83 10.97 21.83 0.24 -44.60 16 19 Si 0.98 39.56 29.59 68.60 2.03 41.59 16 20 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 21 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 22 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 23 C -0.31 -16.09 9.63 22.86 0.22 -15.87 16 24 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.10 1.65 8.10 -2.38 -0.02 1.63 16 29 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.40 12.55 8.74 -92.71 -0.81 11.74 16 32 H 0.11 4.44 6.03 -2.91 -0.02 4.42 16 33 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 34 H 0.10 5.60 6.17 -2.91 -0.02 5.58 16 35 H 0.29 14.05 8.30 -92.71 -0.77 13.28 16 36 H 0.09 4.50 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -64.11 311.98 3.16 -60.95 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: 0.27 Total: 34.93 kcal Atomic # 6 Polarization: -60.23 SS G_CDS: 3.63 Total: -56.60 kcal Atomic # 7 Polarization: -70.59 SS G_CDS: -1.51 Total: -72.10 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Atomic # 16 Polarization: -7.51 SS G_CDS: -1.25 Total: -8.76 kcal Total: -64.11 3.16 -60.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425372656.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.980 kcal (2) G-P(sol) polarization free energy of solvation -64.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds