Wall clock time and date at job start Mon Mar 30 2020 06:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21280 * 120.00611 * 2 1 4 4 N 1.34787 * 119.99756 * 179.97438 * 2 1 3 5 5 C 1.47222 * 121.33347 * 359.97438 * 4 2 1 6 6 C 1.52790 * 107.95970 * 115.77758 * 5 4 2 7 7 C 1.50723 * 110.79624 * 47.43997 * 6 5 4 8 8 C 1.38954 * 117.57113 * 160.57838 * 7 6 5 9 9 C 1.38128 * 120.56323 * 178.79668 * 8 7 6 10 10 F 1.35101 * 120.11172 * 180.02562 * 9 8 7 11 11 C 1.38488 * 119.77063 * 0.02562 * 9 8 7 12 12 C 1.37913 * 119.69005 * 0.26209 * 11 9 8 13 13 C 1.37683 * 122.88502 * 339.84776 * 7 6 5 14 14 C 1.46673 * 121.33556 * 180.02562 * 4 2 1 15 15 H 1.09004 * 109.43998 * 344.44819 * 14 4 2 16 16 C 1.50700 * 109.43717 * 104.36249 * 14 4 2 17 17 H 1.08000 * 120.00328 * 56.26188 * 16 14 4 18 18 C 1.37877 * 120.00426 * 236.26554 * 16 14 4 19 19 N 1.31522 * 119.99820 * 6.17713 * 18 16 14 20 20 Si 1.86794 * 120.00612 * 186.18071 * 18 16 14 21 21 H 1.48501 * 109.46828 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47654 * 119.99729 * 20 18 16 23 23 H 1.48500 * 109.47350 * 240.00018 * 20 18 16 24 24 H 1.09002 * 109.47438 * 240.00581 * 1 2 3 25 25 H 1.09004 * 109.47111 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47489 * 120.00342 * 1 2 3 27 27 H 1.08993 * 109.77562 * 235.40645 * 5 4 2 28 28 H 1.09001 * 109.77379 * 356.14996 * 5 4 2 29 29 H 1.08996 * 109.19568 * 167.83441 * 6 5 4 30 30 H 1.08998 * 109.19667 * 287.12014 * 6 5 4 31 31 H 1.08001 * 119.71218 * 358.75009 * 8 7 6 32 32 H 1.08002 * 120.14965 * 180.23568 * 11 9 8 33 33 H 1.08008 * 119.72771 * 179.97438 * 12 11 9 34 34 H 0.97001 * 119.99970 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.4745 -2.4591 0.0017 6 6 1.8026 -3.1765 -1.3068 7 6 3.2846 -3.1419 -1.5791 8 6 3.7958 -4.0727 -2.4753 9 6 5.1410 -4.0805 -2.7889 10 9 5.6281 -4.9893 -3.6619 11 6 5.9885 -3.1536 -2.2055 12 6 5.4827 -2.2333 -1.3114 13 6 4.1312 -2.2278 -0.9931 14 6 3.6471 -1.2016 0.0011 15 1 4.0331 -0.2201 -0.2746 16 6 4.1397 -1.5654 1.3781 17 1 3.8080 -2.4804 1.8460 18 6 5.0139 -0.7301 2.0406 19 7 5.3233 0.4400 1.5257 20 14 5.7591 -1.2600 3.6695 21 1 5.2535 -2.6090 4.0295 22 1 7.2384 -1.3018 3.5469 23 1 5.3773 -0.2903 4.7273 24 1 -0.3634 -0.5137 0.8900 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3634 -0.5139 -0.8899 27 1 1.8089 -3.0614 0.8463 28 1 0.3997 -2.2916 0.0708 29 1 1.4735 -4.2134 -1.2392 30 1 1.2760 -2.6868 -2.1259 31 1 3.1357 -4.7967 -2.9298 32 1 7.0406 -3.1517 -2.4493 33 1 6.1432 -1.5104 -0.8558 34 1 5.9380 1.0278 1.9920 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527422202.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:14 Heat of formation + Delta-G solvation = -60.016348 kcal Electronic energy + Delta-G solvation = -20038.444427 eV Core-core repulsion = 16850.300895 eV Total energy + Delta-G solvation = -3188.143532 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.42023 -39.66145 -37.99774 -35.26347 -33.42154 -31.72055 -30.76348 -28.95498 -28.63387 -26.07734 -23.46624 -23.10010 -21.61100 -20.35075 -18.08300 -16.83831 -16.46646 -16.32311 -15.66850 -15.29862 -15.13176 -14.86929 -14.34943 -13.95059 -13.72761 -13.32339 -12.86311 -12.73299 -12.58654 -12.34119 -12.07925 -11.69946 -11.50263 -11.38124 -11.13842 -11.03302 -10.90268 -10.67922 -10.27280 -9.93827 -9.58959 -8.87035 -8.66224 -8.34079 -7.82404 -7.51291 -6.16486 -4.29744 1.78709 1.84064 3.19522 3.29022 3.31895 3.59121 3.99723 4.16932 4.34920 4.73118 5.06299 5.17734 5.26438 5.35543 5.48151 5.54607 5.65094 5.75904 5.80493 5.80665 5.91466 5.98296 6.06686 6.24144 6.37578 6.53172 6.65891 6.76267 6.95944 7.11027 7.40469 7.57449 7.67091 7.78105 8.02564 8.50349 8.85183 9.21649 9.37338 10.84598 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.014471 B = 0.009455 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.432297 B = 2960.543592 C = 4259.203138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.503 3.497 3 O -0.541 6.541 4 N -0.597 5.597 5 C 0.108 3.892 6 C -0.088 4.088 7 C -0.073 4.073 8 C -0.158 4.158 9 C 0.065 3.935 10 F -0.154 7.154 11 C -0.159 4.159 12 C -0.072 4.072 13 C -0.045 4.045 14 C 0.274 3.726 15 H 0.113 0.887 16 C -0.520 4.520 17 H 0.059 0.941 18 C 0.076 3.924 19 N -0.863 5.863 20 Si 0.896 3.104 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.282 1.282 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.136 0.864 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.261 -7.127 -5.037 10.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.290 3.710 3 O -0.418 6.418 4 N -0.330 5.330 5 C -0.016 4.016 6 C -0.126 4.126 7 C -0.074 4.074 8 C -0.177 4.177 9 C 0.046 3.954 10 F -0.133 7.133 11 C -0.178 4.178 12 C -0.091 4.091 13 C -0.046 4.046 14 C 0.175 3.825 15 H 0.131 0.869 16 C -0.559 4.559 17 H 0.077 0.923 18 C -0.131 4.131 19 N -0.497 5.497 20 Si 0.723 3.277 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.208 1.208 24 H 0.097 0.903 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.154 0.846 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.806 -6.395 -5.044 10.003 hybrid contribution 0.549 -0.706 0.754 1.170 sum -5.257 -7.101 -4.290 9.822 Atomic orbital electron populations 1.21938 0.94186 1.04124 1.02965 1.20442 0.89472 0.83889 0.77211 1.90720 1.70412 1.30808 1.49887 1.48916 1.08756 1.03985 1.71359 1.21509 0.96567 0.86628 0.96924 1.20769 0.92316 1.00845 0.98711 1.19331 0.95518 0.95548 0.96978 1.20947 0.93551 1.01606 1.01593 1.17459 0.92785 0.91244 0.93927 1.91417 1.88612 1.65681 1.67569 1.21010 0.99592 0.96945 1.00212 1.21006 0.95460 0.97572 0.95028 1.20746 0.93248 0.96601 0.94046 1.18191 0.75761 0.96261 0.92320 0.86909 1.21059 1.27804 1.07069 0.99943 0.92309 1.25057 0.96062 0.94168 0.97792 1.69943 1.32947 1.07684 1.39164 0.86482 0.79104 0.78875 0.83258 1.19531 1.20592 1.20801 0.90262 0.90046 0.90521 0.90810 0.90591 0.90535 0.90962 0.86060 0.85673 0.84598 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 8.69 36.00 0.31 -2.18 16 2 C 0.50 10.65 7.83 -10.98 -0.09 10.56 16 3 O -0.54 -14.28 16.62 5.56 0.09 -14.18 16 4 N -0.60 -12.44 2.57 -168.08 -0.43 -12.88 16 5 C 0.11 1.71 6.21 -3.76 -0.02 1.69 16 6 C -0.09 -1.29 5.87 -27.98 -0.16 -1.45 16 7 C -0.07 -1.32 5.77 -104.55 -0.60 -1.93 16 8 C -0.16 -2.64 9.57 -39.36 -0.38 -3.01 16 9 C 0.06 1.14 7.30 -39.53 -0.29 0.85 16 10 F -0.15 -2.60 17.27 2.25 0.04 -2.56 16 11 C -0.16 -2.85 10.04 -39.61 -0.40 -3.25 16 12 C -0.07 -1.47 9.42 -39.47 -0.37 -1.85 16 13 C -0.04 -0.95 5.15 -104.52 -0.54 -1.49 16 14 C 0.27 6.59 2.52 -70.06 -0.18 6.41 16 15 H 0.11 3.19 5.95 -51.93 -0.31 2.89 16 16 C -0.52 -13.43 8.15 -34.44 -0.28 -13.71 16 17 H 0.06 1.51 7.52 -52.49 -0.39 1.12 16 18 C 0.08 2.02 5.45 -17.82 -0.10 1.92 16 19 N -0.86 -24.19 12.62 55.43 0.70 -23.49 16 20 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H 0.08 1.00 7.78 -51.93 -0.40 0.59 16 25 H 0.08 1.14 8.12 -51.93 -0.42 0.72 16 26 H 0.08 0.90 7.93 -51.93 -0.41 0.49 16 27 H 0.07 1.24 7.69 -51.93 -0.40 0.84 16 28 H 0.08 0.93 6.05 -51.93 -0.31 0.62 16 29 H 0.08 0.91 8.11 -51.93 -0.42 0.49 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.12 1.69 8.05 -52.49 -0.42 1.27 16 32 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 33 H 0.14 2.92 8.05 -52.48 -0.42 2.50 16 34 H 0.27 7.11 8.31 -40.82 -0.34 6.78 16 LS Contribution 291.66 15.07 4.40 4.40 Total: -1.00 -30.83 291.66 -7.22 -38.05 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -3.90 Total: 2.60 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -3.09 Total: -7.42 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.27 Total: -36.36 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.09 Total: -14.18 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.04 Total: -2.56 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.83 -7.22 -38.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527422202.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.970 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds