Wall clock time and date at job start Mon Mar 30 2020 06:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21280 * 120.00611 * 2 1 4 4 N 1.34787 * 119.99756 * 179.97438 * 2 1 3 5 5 C 1.47222 * 121.33347 * 359.97438 * 4 2 1 6 6 C 1.52790 * 107.95970 * 115.77758 * 5 4 2 7 7 C 1.50723 * 110.79624 * 47.43997 * 6 5 4 8 8 C 1.38954 * 117.57113 * 160.57838 * 7 6 5 9 9 C 1.38128 * 120.56323 * 178.79668 * 8 7 6 10 10 F 1.35101 * 120.11172 * 180.02562 * 9 8 7 11 11 C 1.38488 * 119.77063 * 0.02562 * 9 8 7 12 12 C 1.37913 * 119.69005 * 0.26209 * 11 9 8 13 13 C 1.37683 * 122.88502 * 339.84776 * 7 6 5 14 14 C 1.46673 * 121.33556 * 180.02562 * 4 2 1 15 15 H 1.09004 * 109.43998 * 344.44819 * 14 4 2 16 16 C 1.50700 * 109.43717 * 104.36249 * 14 4 2 17 17 H 1.08000 * 120.00328 * 56.26188 * 16 14 4 18 18 C 1.37877 * 120.00426 * 236.26554 * 16 14 4 19 19 N 1.31522 * 119.99820 * 6.17713 * 18 16 14 20 20 Si 1.86794 * 120.00612 * 186.18071 * 18 16 14 21 21 H 1.48501 * 109.46828 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47654 * 119.99729 * 20 18 16 23 23 H 1.48500 * 109.47350 * 240.00018 * 20 18 16 24 24 H 1.09002 * 109.47438 * 240.00581 * 1 2 3 25 25 H 1.09004 * 109.47111 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47489 * 120.00342 * 1 2 3 27 27 H 1.08993 * 109.77562 * 235.40645 * 5 4 2 28 28 H 1.09001 * 109.77379 * 356.14996 * 5 4 2 29 29 H 1.08996 * 109.19568 * 167.83441 * 6 5 4 30 30 H 1.08998 * 109.19667 * 287.12014 * 6 5 4 31 31 H 1.08001 * 119.71218 * 358.75009 * 8 7 6 32 32 H 1.08002 * 120.14965 * 180.23568 * 11 9 8 33 33 H 1.08008 * 119.72771 * 179.97438 * 12 11 9 34 34 H 0.97001 * 119.99970 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.4745 -2.4591 0.0017 6 6 1.8026 -3.1765 -1.3068 7 6 3.2846 -3.1419 -1.5791 8 6 3.7958 -4.0727 -2.4753 9 6 5.1410 -4.0805 -2.7889 10 9 5.6281 -4.9893 -3.6619 11 6 5.9885 -3.1536 -2.2055 12 6 5.4827 -2.2333 -1.3114 13 6 4.1312 -2.2278 -0.9931 14 6 3.6471 -1.2016 0.0011 15 1 4.0331 -0.2201 -0.2746 16 6 4.1397 -1.5654 1.3781 17 1 3.8080 -2.4804 1.8460 18 6 5.0139 -0.7301 2.0406 19 7 5.3233 0.4400 1.5257 20 14 5.7591 -1.2600 3.6695 21 1 5.2535 -2.6090 4.0295 22 1 7.2384 -1.3018 3.5469 23 1 5.3773 -0.2903 4.7273 24 1 -0.3634 -0.5137 0.8900 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3634 -0.5139 -0.8899 27 1 1.8089 -3.0614 0.8463 28 1 0.3997 -2.2916 0.0708 29 1 1.4735 -4.2134 -1.2392 30 1 1.2760 -2.6868 -2.1259 31 1 3.1357 -4.7967 -2.9298 32 1 7.0406 -3.1517 -2.4493 33 1 6.1432 -1.5104 -0.8558 34 1 5.9380 1.0278 1.9920 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527422202.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:14 Heat of formation + Delta-G solvation = -78.801027 kcal Electronic energy + Delta-G solvation = -20039.258992 eV Core-core repulsion = 16850.300895 eV Total energy + Delta-G solvation = -3188.958097 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.79466 -41.18689 -39.58157 -36.85157 -35.20630 -33.29689 -32.35471 -30.35624 -29.96926 -27.87982 -25.00824 -24.61431 -23.10829 -21.82182 -19.66660 -18.54649 -18.07703 -17.83096 -17.14240 -16.76009 -16.69900 -16.50581 -15.87985 -15.50455 -15.04873 -14.81707 -14.41583 -14.26734 -14.11691 -13.78445 -13.46429 -13.08055 -12.92264 -12.91618 -12.82750 -12.59174 -12.48294 -12.22967 -11.71962 -11.66029 -11.43900 -10.80720 -10.43834 -9.74809 -9.34342 -9.20179 -8.14262 -6.35487 0.34593 0.37284 1.35295 1.37458 1.48807 1.99783 2.33665 2.49852 2.75594 3.18151 3.34243 3.80395 3.94464 4.02375 4.18895 4.28342 4.34127 4.50399 4.56823 4.65188 4.68516 4.77582 4.85799 5.07566 5.12803 5.17464 5.23291 5.30122 5.38576 5.47216 5.62743 5.74849 6.05489 6.07912 6.16857 6.76485 7.01606 7.33855 7.63554 8.85189 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.014471 B = 0.009455 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.432297 B = 2960.543592 C = 4259.203138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.484 3.516 3 O -0.612 6.612 4 N -0.603 5.603 5 C 0.101 3.899 6 C -0.086 4.086 7 C -0.071 4.071 8 C -0.146 4.146 9 C 0.068 3.932 10 F -0.146 7.146 11 C -0.159 4.159 12 C -0.094 4.094 13 C -0.076 4.076 14 C 0.278 3.722 15 H 0.056 0.944 16 C -0.523 4.523 17 H 0.057 0.943 18 C 0.023 3.977 19 N -0.907 5.907 20 Si 0.957 3.043 21 H -0.260 1.260 22 H -0.277 1.277 23 H -0.285 1.285 24 H 0.106 0.894 25 H 0.082 0.918 26 H 0.116 0.884 27 H 0.063 0.937 28 H 0.123 0.877 29 H 0.119 0.881 30 H 0.094 0.906 31 H 0.162 0.838 32 H 0.143 0.857 33 H 0.105 0.895 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.890 -10.390 -5.888 14.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.274 3.726 3 O -0.494 6.494 4 N -0.334 5.334 5 C -0.021 4.021 6 C -0.123 4.123 7 C -0.072 4.072 8 C -0.165 4.165 9 C 0.049 3.951 10 F -0.125 7.125 11 C -0.178 4.178 12 C -0.113 4.113 13 C -0.077 4.077 14 C 0.176 3.824 15 H 0.074 0.926 16 C -0.562 4.562 17 H 0.076 0.924 18 C -0.179 4.179 19 N -0.544 5.544 20 Si 0.781 3.219 21 H -0.184 1.184 22 H -0.203 1.203 23 H -0.211 1.211 24 H 0.125 0.875 25 H 0.101 0.899 26 H 0.134 0.866 27 H 0.081 0.919 28 H 0.141 0.859 29 H 0.137 0.863 30 H 0.113 0.887 31 H 0.180 0.820 32 H 0.161 0.839 33 H 0.124 0.876 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.468 -9.723 -5.899 14.179 hybrid contribution 1.344 0.233 0.908 1.638 sum -7.124 -9.490 -4.992 12.874 Atomic orbital electron populations 1.21895 0.88123 1.05456 1.06036 1.21767 0.92376 0.82841 0.75637 1.90687 1.72465 1.33286 1.52999 1.48869 1.07816 1.06209 1.70517 1.21889 0.98666 0.83906 0.97617 1.20911 0.89664 1.03426 0.98322 1.19725 0.97323 0.94127 0.95986 1.21291 0.93530 1.01310 1.00330 1.17562 0.93286 0.90787 0.93504 1.91443 1.88634 1.65233 1.67194 1.21101 1.00819 0.96412 0.99427 1.20856 0.95443 0.98339 0.96628 1.20568 0.94035 0.97606 0.95506 1.17705 0.77899 0.94450 0.92304 0.92629 1.21316 1.27355 1.06452 1.01086 0.92430 1.25839 0.96814 0.94181 1.01085 1.70126 1.34368 1.09127 1.40747 0.85539 0.78366 0.78650 0.79301 1.18373 1.20260 1.21091 0.87532 0.89872 0.86574 0.91880 0.85916 0.86284 0.88746 0.82004 0.83905 0.87637 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 8.69 71.23 0.62 -3.38 16 2 C 0.48 20.54 7.83 87.65 0.69 21.23 16 3 O -0.61 -34.15 16.62 -3.03 -0.05 -34.20 16 4 N -0.60 -24.94 2.57 -804.06 -2.06 -27.00 16 5 C 0.10 2.85 6.21 86.17 0.54 3.39 16 6 C -0.09 -2.07 5.87 29.79 0.17 -1.89 16 7 C -0.07 -2.38 5.77 -19.82 -0.11 -2.49 16 8 C -0.15 -4.28 9.57 22.42 0.21 -4.06 16 9 C 0.07 2.19 7.30 22.30 0.16 2.36 16 10 F -0.15 -4.46 17.27 44.97 0.78 -3.68 16 11 C -0.16 -5.65 10.04 22.25 0.22 -5.43 16 12 C -0.09 -4.02 9.42 22.34 0.21 -3.81 16 13 C -0.08 -3.26 5.15 -19.80 -0.10 -3.36 16 14 C 0.28 13.99 2.52 43.52 0.11 14.10 16 15 H 0.06 3.44 5.95 -2.38 -0.01 3.42 16 16 C -0.52 -28.11 8.15 25.60 0.21 -27.90 16 17 H 0.06 3.01 7.52 -2.91 -0.02 2.99 16 18 C 0.02 1.27 5.45 84.65 0.46 1.73 16 19 N -0.91 -54.71 12.62 21.45 0.27 -54.44 16 20 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 21 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 24 H 0.11 2.19 7.78 -2.39 -0.02 2.17 16 25 H 0.08 2.14 8.12 -2.38 -0.02 2.12 16 26 H 0.12 2.09 7.93 -2.39 -0.02 2.07 16 27 H 0.06 1.93 7.69 -2.39 -0.02 1.91 16 28 H 0.12 2.30 6.05 -2.39 -0.01 2.28 16 29 H 0.12 1.96 8.11 -2.39 -0.02 1.94 16 30 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.16 3.46 8.05 -2.91 -0.02 3.44 16 32 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 33 H 0.11 5.04 8.05 -2.91 -0.02 5.01 16 34 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -75.08 291.66 5.46 -69.62 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 1.12 Total: 13.49 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 3.39 Total: -9.53 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -1.79 Total: -81.44 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -0.05 Total: -34.20 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.78 Total: -3.68 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -75.08 5.46 -69.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527422202.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.182 kcal (2) G-P(sol) polarization free energy of solvation -75.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds