Wall clock time and date at job start Mon Mar 30 2020 06:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 110.47278 * 2 1 4 4 C 1.53754 * 110.42392 * 237.55436 * 2 1 3 5 5 N 1.46529 * 105.19832 * 241.23725 * 4 2 1 6 6 C 1.34774 * 124.93525 * 180.26817 * 5 4 2 7 7 O 1.21747 * 119.99615 * 174.70124 * 6 5 4 8 8 C 1.46164 * 120.00550 * 354.70508 * 6 5 4 9 9 H 1.08003 * 119.99658 * 351.61921 * 8 6 5 10 10 C 1.40115 * 120.00454 * 171.62712 * 8 6 5 11 11 N 1.30636 * 120.00275 * 170.36090 * 10 8 6 12 12 Si 1.86805 * 119.99855 * 350.35591 * 10 8 6 13 13 H 1.48507 * 109.46790 * 84.64406 * 12 10 8 14 14 H 1.48498 * 109.47219 * 204.63699 * 12 10 8 15 15 H 1.48497 * 109.47216 * 324.64249 * 12 10 8 16 16 C 1.39426 * 110.12317 * 359.97438 * 5 4 2 17 17 C 1.39749 * 129.31365 * 179.97438 * 16 5 4 18 18 C 1.38005 * 120.24912 * 180.02562 * 17 16 5 19 19 F 1.35092 * 119.90584 * 180.02562 * 18 17 16 20 20 C 1.38584 * 120.18935 * 0.02562 * 18 17 16 21 21 C 1.38232 * 119.82487 * 359.97438 * 20 18 17 22 22 C 1.38143 * 120.18677 * 0.02562 * 21 20 18 23 23 H 1.08996 * 109.47147 * 298.99923 * 1 2 3 24 24 H 1.09001 * 109.47472 * 59.00314 * 1 2 3 25 25 H 1.08999 * 109.47035 * 179.00137 * 1 2 3 26 26 H 1.09004 * 109.47085 * 180.99787 * 3 2 1 27 27 H 1.09004 * 109.47548 * 301.00273 * 3 2 1 28 28 H 1.09003 * 109.47171 * 61.00429 * 3 2 1 29 29 H 1.09004 * 110.29870 * 122.30819 * 4 2 1 30 30 H 1.09000 * 110.29763 * 0.16970 * 4 2 1 31 31 H 0.96998 * 120.00023 * 179.97438 * 11 10 8 32 32 H 1.07990 * 119.87703 * 359.97438 * 17 16 5 33 33 H 1.08001 * 120.08787 * 179.97438 * 20 18 17 34 34 H 1.08000 * 119.90955 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0651 1.4333 0.0000 4 6 2.0665 -0.7730 -1.2160 5 7 2.8382 -1.8849 -0.6544 6 6 3.4904 -2.8154 -1.3790 7 8 4.1844 -3.6454 -0.8207 8 6 3.3646 -2.8282 -2.8352 9 1 2.6475 -2.1829 -3.3209 10 6 4.1741 -3.6776 -3.6010 11 7 3.9375 -3.8306 -4.8766 12 14 5.5919 -4.5911 -2.7979 13 1 5.0878 -5.8461 -2.1844 14 1 6.6147 -4.9178 -3.8237 15 1 6.2000 -3.7359 -1.7472 16 6 2.8052 -1.8363 0.7387 17 6 3.3997 -2.6933 1.6688 18 6 3.2432 -2.4676 3.0213 19 9 3.8214 -3.3001 3.9144 20 6 2.4947 -1.3893 3.4658 21 6 1.9043 -0.5382 2.5505 22 6 2.0582 -0.7602 1.1958 23 1 -0.3633 0.4982 0.8988 24 1 -0.3634 0.5292 -0.8809 25 1 -0.3633 -1.0275 -0.0179 26 1 3.1548 1.4143 -0.0179 27 1 1.6963 1.9589 -0.8809 28 1 1.7255 1.9480 0.8989 29 1 2.7106 -0.1317 -1.8177 30 1 1.2404 -1.1520 -1.8177 31 1 4.4982 -4.4183 -5.4068 32 1 3.9830 -3.5358 1.3280 33 1 2.3730 -1.2145 4.5246 34 1 1.3211 0.3028 2.8955 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593792027.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:11 Heat of formation + Delta-G solvation = -70.053262 kcal Electronic energy + Delta-G solvation = -19931.890541 eV Core-core repulsion = 16743.311776 eV Total energy + Delta-G solvation = -3188.578765 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.53242 -40.71303 -37.49849 -36.12409 -33.62686 -33.03490 -29.92620 -29.22217 -27.23963 -26.83198 -25.88766 -23.00778 -22.02953 -19.84894 -19.37685 -17.26606 -16.86262 -16.30684 -15.59745 -15.38946 -15.23640 -14.95169 -14.65358 -13.86133 -13.54132 -13.43587 -13.21260 -12.85406 -12.68233 -12.53266 -12.38274 -11.97354 -11.88112 -11.58051 -11.42506 -11.13068 -11.06671 -10.69432 -10.59519 -10.47995 -9.74224 -9.51239 -9.21630 -8.36362 -8.12823 -7.20420 -6.87004 -5.11998 1.52753 1.68209 3.28817 3.35267 3.58561 3.74872 3.80811 4.14599 4.37898 4.62730 4.69774 4.73426 5.08522 5.22131 5.26325 5.30218 5.41624 5.64969 5.69005 5.82608 5.84120 5.91945 5.99581 6.06257 6.13742 6.15176 6.28061 6.42858 6.46703 6.60968 6.72095 6.88162 7.08674 7.45008 7.63214 8.08070 8.39124 8.78400 9.68132 10.11997 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.018942 B = 0.008065 C = 0.005931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.880722 B = 3470.983472 C = 4719.771672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.029 4.029 3 C -0.132 4.132 4 C 0.122 3.878 5 N -0.555 5.555 6 C 0.543 3.457 7 O -0.595 6.595 8 C -0.515 4.515 9 H 0.092 0.908 10 C 0.102 3.898 11 N -0.810 5.810 12 Si 0.967 3.033 13 H -0.275 1.275 14 H -0.318 1.318 15 H -0.259 1.259 16 C 0.217 3.783 17 C -0.189 4.189 18 C 0.126 3.874 19 F -0.144 7.144 20 C -0.208 4.208 21 C -0.043 4.043 22 C -0.166 4.166 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.288 0.712 32 H 0.151 0.849 33 H 0.128 0.872 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.679 9.242 9.365 14.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.029 4.029 3 C -0.189 4.189 4 C -0.001 4.001 5 N -0.272 5.272 6 C 0.357 3.643 7 O -0.487 6.487 8 C -0.549 4.549 9 H 0.110 0.890 10 C -0.119 4.119 11 N -0.439 5.439 12 Si 0.798 3.202 13 H -0.201 1.201 14 H -0.249 1.249 15 H -0.185 1.185 16 C 0.115 3.885 17 C -0.211 4.211 18 C 0.106 3.894 19 F -0.123 7.123 20 C -0.228 4.228 21 C -0.062 4.062 22 C -0.171 4.171 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.169 0.831 33 H 0.146 0.854 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.276 8.665 9.215 13.705 hybrid contribution 0.614 -0.583 0.276 0.891 sum -4.662 8.082 9.491 13.309 Atomic orbital electron populations 1.21825 0.92994 1.02296 1.01810 1.20072 0.96050 0.95213 0.91604 1.21828 1.01343 0.93947 1.01815 1.22086 0.95613 0.87408 0.95003 1.45959 1.50568 1.28429 1.02280 1.18330 0.78437 0.79050 0.88498 1.90222 1.44648 1.41599 1.72206 1.20695 1.22571 1.24140 0.87524 0.88978 1.25836 0.98052 0.93633 0.94365 1.69511 1.36096 1.30789 1.07474 0.85191 0.78299 0.80315 0.76350 1.20116 1.24902 1.18468 1.18231 0.92470 0.92751 0.85044 1.20848 1.06483 1.03823 0.89962 1.17298 0.95994 0.89942 0.86178 1.91454 1.82765 1.70733 1.67339 1.20720 1.04585 0.97438 1.00091 1.19955 0.97738 0.98069 0.90400 1.19989 1.04465 0.98575 0.94033 0.92327 0.92052 0.92263 0.92280 0.92051 0.92323 0.90246 0.90244 0.90220 0.83099 0.85363 0.85724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 8.39 37.16 0.31 -1.22 16 2 C -0.03 -0.41 1.03 -155.01 -0.16 -0.57 16 3 C -0.13 -1.53 8.39 37.16 0.31 -1.21 16 4 C 0.12 2.12 5.61 -3.63 -0.02 2.10 16 5 N -0.55 -12.25 3.12 -114.54 -0.36 -12.61 16 6 C 0.54 14.26 7.47 -13.08 -0.10 14.17 16 7 O -0.60 -16.88 10.30 5.15 0.05 -16.83 16 8 C -0.52 -13.97 9.55 -35.70 -0.34 -14.31 16 9 H 0.09 2.46 7.29 -52.48 -0.38 2.07 16 10 C 0.10 2.79 5.52 -17.36 -0.10 2.69 16 11 N -0.81 -21.96 13.92 55.55 0.77 -21.19 16 12 Si 0.97 24.74 25.88 -169.99 -4.40 20.34 16 13 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 14 H -0.32 -7.66 7.11 56.52 0.40 -7.26 16 15 H -0.26 -7.02 6.55 56.52 0.37 -6.65 16 16 C 0.22 4.41 6.62 -83.65 -0.55 3.85 16 17 C -0.19 -3.91 9.43 -39.10 -0.37 -4.28 16 18 C 0.13 2.24 7.28 -39.54 -0.29 1.95 16 19 F -0.14 -2.55 17.26 2.25 0.04 -2.51 16 20 C -0.21 -3.05 10.04 -39.46 -0.40 -3.45 16 21 C -0.04 -0.59 10.03 -39.62 -0.40 -0.99 16 22 C -0.17 -2.69 4.87 -104.21 -0.51 -3.20 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 1.35 7.70 -51.93 -0.40 0.95 16 30 H 0.08 1.35 7.56 -51.93 -0.39 0.96 16 31 H 0.29 7.13 8.29 -40.82 -0.34 6.80 16 32 H 0.15 3.52 6.28 -52.49 -0.33 3.19 16 33 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 287.57 15.07 4.33 4.33 Total: -1.00 -30.15 287.57 -6.21 -36.36 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: -4.05 Total: -3.43 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -2.60 Total: -4.46 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.42 Total: -33.80 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: 0.05 Total: -16.83 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.51 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -4.40 Total: 20.34 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.15 -6.21 -36.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593792027.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.691 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds