Wall clock time and date at job start Mon Mar 30 2020 06:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 110.47278 * 2 1 4 4 C 1.53754 * 110.42392 * 237.55436 * 2 1 3 5 5 N 1.46529 * 105.19832 * 241.23725 * 4 2 1 6 6 C 1.34774 * 124.93525 * 180.26817 * 5 4 2 7 7 O 1.21747 * 119.99615 * 174.70124 * 6 5 4 8 8 C 1.46164 * 120.00550 * 354.70508 * 6 5 4 9 9 H 1.08003 * 119.99658 * 351.61921 * 8 6 5 10 10 C 1.40115 * 120.00454 * 171.62712 * 8 6 5 11 11 N 1.30636 * 120.00275 * 170.36090 * 10 8 6 12 12 Si 1.86805 * 119.99855 * 350.35591 * 10 8 6 13 13 H 1.48507 * 109.46790 * 84.64406 * 12 10 8 14 14 H 1.48498 * 109.47219 * 204.63699 * 12 10 8 15 15 H 1.48497 * 109.47216 * 324.64249 * 12 10 8 16 16 C 1.39426 * 110.12317 * 359.97438 * 5 4 2 17 17 C 1.39749 * 129.31365 * 179.97438 * 16 5 4 18 18 C 1.38005 * 120.24912 * 180.02562 * 17 16 5 19 19 F 1.35092 * 119.90584 * 180.02562 * 18 17 16 20 20 C 1.38584 * 120.18935 * 0.02562 * 18 17 16 21 21 C 1.38232 * 119.82487 * 359.97438 * 20 18 17 22 22 C 1.38143 * 120.18677 * 0.02562 * 21 20 18 23 23 H 1.08996 * 109.47147 * 298.99923 * 1 2 3 24 24 H 1.09001 * 109.47472 * 59.00314 * 1 2 3 25 25 H 1.08999 * 109.47035 * 179.00137 * 1 2 3 26 26 H 1.09004 * 109.47085 * 180.99787 * 3 2 1 27 27 H 1.09004 * 109.47548 * 301.00273 * 3 2 1 28 28 H 1.09003 * 109.47171 * 61.00429 * 3 2 1 29 29 H 1.09004 * 110.29870 * 122.30819 * 4 2 1 30 30 H 1.09000 * 110.29763 * 0.16970 * 4 2 1 31 31 H 0.96998 * 120.00023 * 179.97438 * 11 10 8 32 32 H 1.07990 * 119.87703 * 359.97438 * 17 16 5 33 33 H 1.08001 * 120.08787 * 179.97438 * 20 18 17 34 34 H 1.08000 * 119.90955 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0651 1.4333 0.0000 4 6 2.0665 -0.7730 -1.2160 5 7 2.8382 -1.8849 -0.6544 6 6 3.4904 -2.8154 -1.3790 7 8 4.1844 -3.6454 -0.8207 8 6 3.3646 -2.8282 -2.8352 9 1 2.6475 -2.1829 -3.3209 10 6 4.1741 -3.6776 -3.6010 11 7 3.9375 -3.8306 -4.8766 12 14 5.5919 -4.5911 -2.7979 13 1 5.0878 -5.8461 -2.1844 14 1 6.6147 -4.9178 -3.8237 15 1 6.2000 -3.7359 -1.7472 16 6 2.8052 -1.8363 0.7387 17 6 3.3997 -2.6933 1.6688 18 6 3.2432 -2.4676 3.0213 19 9 3.8214 -3.3001 3.9144 20 6 2.4947 -1.3893 3.4658 21 6 1.9043 -0.5382 2.5505 22 6 2.0582 -0.7602 1.1958 23 1 -0.3633 0.4982 0.8988 24 1 -0.3634 0.5292 -0.8809 25 1 -0.3633 -1.0275 -0.0179 26 1 3.1548 1.4143 -0.0179 27 1 1.6963 1.9589 -0.8809 28 1 1.7255 1.9480 0.8989 29 1 2.7106 -0.1317 -1.8177 30 1 1.2404 -1.1520 -1.8177 31 1 4.4982 -4.4183 -5.4068 32 1 3.9830 -3.5358 1.3280 33 1 2.3730 -1.2145 4.5246 34 1 1.3211 0.3028 2.8955 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593792027.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:11 Heat of formation + Delta-G solvation = -88.252134 kcal Electronic energy + Delta-G solvation = -19932.679703 eV Core-core repulsion = 16743.311776 eV Total energy + Delta-G solvation = -3189.367927 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.92615 -42.15084 -39.34246 -37.46318 -35.28949 -34.95591 -31.37592 -30.59275 -28.74013 -28.11424 -27.29574 -24.46846 -23.44527 -21.55736 -20.60193 -19.13214 -18.38342 -18.10931 -17.21027 -16.83839 -16.68520 -16.40813 -16.29455 -15.41668 -14.86492 -14.81622 -14.73025 -14.51161 -14.13160 -13.87681 -13.67988 -13.61661 -13.36461 -13.26871 -12.70744 -12.58526 -12.53759 -12.05339 -11.83497 -11.75544 -11.61070 -11.37534 -11.02559 -10.16365 -9.72233 -8.98469 -8.75106 -7.22059 0.17436 0.29225 1.21113 1.28146 1.49668 1.90191 2.09031 2.39576 2.62845 3.15506 3.32210 3.44921 3.49686 4.02418 4.06640 4.11544 4.19508 4.40844 4.52685 4.62608 4.72435 4.75429 4.92028 4.98104 5.02400 5.07841 5.14969 5.21963 5.28465 5.33817 5.46429 5.49440 5.55987 5.60093 5.96044 6.13316 6.41071 6.84399 7.67573 8.05796 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.018942 B = 0.008065 C = 0.005931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.880722 B = 3470.983472 C = 4719.771672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.021 4.021 3 C -0.128 4.128 4 C 0.112 3.888 5 N -0.568 5.568 6 C 0.539 3.461 7 O -0.627 6.627 8 C -0.534 4.534 9 H 0.089 0.911 10 C 0.076 3.924 11 N -0.826 5.826 12 Si 1.008 2.992 13 H -0.292 1.292 14 H -0.290 1.290 15 H -0.289 1.289 16 C 0.169 3.831 17 C -0.221 4.221 18 C 0.111 3.889 19 F -0.149 7.149 20 C -0.180 4.180 21 C -0.028 4.028 22 C -0.149 4.149 23 H 0.089 0.911 24 H 0.079 0.921 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.299 0.701 32 H 0.107 0.893 33 H 0.170 0.830 34 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.590 12.213 11.383 18.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.021 4.021 3 C -0.185 4.185 4 C -0.010 4.010 5 N -0.286 5.286 6 C 0.351 3.649 7 O -0.521 6.521 8 C -0.569 4.569 9 H 0.107 0.893 10 C -0.143 4.143 11 N -0.456 5.456 12 Si 0.840 3.160 13 H -0.220 1.220 14 H -0.219 1.219 15 H -0.216 1.216 16 C 0.070 3.930 17 C -0.243 4.243 18 C 0.091 3.909 19 F -0.127 7.127 20 C -0.200 4.200 21 C -0.046 4.046 22 C -0.152 4.152 23 H 0.107 0.893 24 H 0.098 0.902 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.125 0.875 33 H 0.188 0.812 34 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -7.204 11.664 11.237 17.726 hybrid contribution 1.150 -1.454 -0.203 1.865 sum -6.054 10.210 11.034 16.206 Atomic orbital electron populations 1.21827 0.90469 1.01888 1.04286 1.20166 0.97801 0.95765 0.88377 1.21831 1.00179 0.92174 1.04302 1.22406 0.95068 0.86524 0.96973 1.45752 1.50721 1.28642 1.03455 1.18318 0.78395 0.79473 0.88674 1.90195 1.45954 1.43070 1.72914 1.20846 1.23047 1.24663 0.88321 0.89271 1.26196 0.99050 0.94214 0.94798 1.69491 1.36923 1.31556 1.07582 0.84640 0.77550 0.78309 0.75463 1.21957 1.21899 1.21646 1.18564 0.95205 0.95105 0.84080 1.20734 1.07859 1.03675 0.92058 1.17496 0.97193 0.91306 0.84920 1.91438 1.83054 1.71190 1.67058 1.21236 1.01387 0.94903 1.02450 1.20552 0.96623 0.98755 0.88700 1.20425 1.02266 0.96636 0.95912 0.89266 0.90244 0.94115 0.94112 0.90215 0.89269 0.90465 0.90549 0.89064 0.87472 0.81215 0.80217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 8.39 71.98 0.60 -1.81 16 2 C -0.02 -0.52 1.03 -52.51 -0.05 -0.57 16 3 C -0.13 -2.41 8.39 71.98 0.60 -1.80 16 4 C 0.11 3.90 5.61 86.63 0.49 4.39 16 5 N -0.57 -26.03 3.12 -634.50 -1.98 -28.01 16 6 C 0.54 29.92 7.47 86.30 0.65 30.57 16 7 O -0.63 -38.02 10.30 -4.50 -0.05 -38.06 16 8 C -0.53 -30.21 9.55 24.79 0.24 -29.97 16 9 H 0.09 4.95 7.29 -2.91 -0.02 4.93 16 10 C 0.08 4.30 5.52 85.33 0.47 4.78 16 11 N -0.83 -45.39 13.92 21.85 0.30 -45.09 16 12 Si 1.01 52.94 25.88 68.60 1.78 54.71 16 13 H -0.29 -15.99 7.11 99.48 0.71 -15.28 16 14 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 15 H -0.29 -16.48 6.55 99.48 0.65 -15.83 16 16 C 0.17 7.01 6.62 38.42 0.25 7.27 16 17 C -0.22 -9.58 9.43 22.58 0.21 -9.37 16 18 C 0.11 3.86 7.28 22.30 0.16 4.02 16 19 F -0.15 -5.25 17.26 44.97 0.78 -4.47 16 20 C -0.18 -4.49 10.04 22.35 0.22 -4.27 16 21 C -0.03 -0.63 10.03 22.25 0.22 -0.40 16 22 C -0.15 -4.40 4.87 -19.60 -0.10 -4.50 16 23 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 2.65 7.70 -2.38 -0.02 2.63 16 30 H 0.08 2.64 7.56 -2.39 -0.02 2.62 16 31 H 0.30 14.85 8.29 -92.71 -0.77 14.08 16 32 H 0.11 5.52 6.28 -2.92 -0.02 5.50 16 33 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 34 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -71.06 287.57 5.86 -65.19 By element: Atomic # 1 Polarization: -3.67 SS G_CDS: 1.06 Total: -2.61 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 3.97 Total: -1.66 kcal Atomic # 7 Polarization: -71.42 SS G_CDS: -1.67 Total: -73.10 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -0.05 Total: -38.06 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.78 Total: -4.47 kcal Atomic # 14 Polarization: 52.94 SS G_CDS: 1.78 Total: 54.71 kcal Total: -71.06 5.86 -65.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593792027.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.058 kcal (2) G-P(sol) polarization free energy of solvation -71.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds