Wall clock time and date at job start Mon Mar 30 2020 07:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.50708 * 109.47080 * 180.02562 * 11 10 9 13 13 O 1.21277 * 119.99772 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00117 * 179.97438 * 12 11 10 15 15 C 1.46499 * 120.00212 * 179.97438 * 14 12 11 16 16 H 1.08997 * 115.55067 * 9.27475 * 15 14 12 17 17 C 1.52999 * 117.49800 * 223.61086 * 15 14 12 18 18 C 1.52997 * 117.49931 * 154.98490 * 15 14 12 19 19 H 1.08995 * 117.50391 * 0.02562 * 18 15 14 20 20 C 1.50701 * 117.50000 * 214.97569 * 18 15 14 21 21 C 1.34511 * 125.78916 * 119.99685 * 20 18 15 22 22 C 1.41380 * 106.84291 * 180.02562 * 21 20 18 23 23 C 1.34519 * 106.84064 * 0.02562 * 22 21 20 24 24 O 1.34303 * 125.79097 * 299.69833 * 20 18 15 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 29 29 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 30 30 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 31 31 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 32 32 H 0.97005 * 120.00065 * 359.97438 * 14 12 11 33 33 H 1.09000 * 117.49965 * 359.97438 * 17 15 14 34 34 H 1.08999 * 117.50251 * 144.99800 * 17 15 14 35 35 H 1.08006 * 126.57871 * 0.04876 * 21 20 18 36 36 H 1.07996 * 126.58362 * 179.97438 * 22 21 20 37 37 H 1.07994 * 125.78843 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 6 2.4593 -6.1326 -0.0214 13 8 3.6517 -5.9110 -0.0199 14 7 2.0100 -7.4032 -0.0270 15 6 2.9619 -8.5168 -0.0319 16 1 4.0051 -8.2442 0.1279 17 6 2.6741 -9.6881 -0.9731 18 6 2.4861 -9.8554 0.5361 19 1 1.4648 -9.9077 0.9130 20 6 3.4957 -10.6965 1.2740 21 6 3.4055 -11.0879 2.5577 22 6 4.5612 -11.8537 2.8347 23 6 5.2888 -11.8840 1.7037 24 8 4.6353 -11.1870 0.7598 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5609 0.8844 27 1 0.6244 -2.5529 -0.8956 28 1 2.8718 -3.6005 -0.9002 29 1 2.8717 -3.6084 0.8798 30 1 0.8531 -5.0490 0.8724 31 1 0.8537 -5.0406 -0.9075 32 1 1.0563 -7.5804 -0.0279 33 1 1.7763 -9.6304 -1.5885 34 1 3.5279 -10.1862 -1.4325 35 1 2.6038 -10.8610 3.2450 36 1 4.8121 -12.3235 3.7741 37 1 6.2350 -12.3884 1.5748 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594047153.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:19 Heat of formation + Delta-G solvation = -14.163350 kcal Electronic energy + Delta-G solvation = -18340.332399 eV Core-core repulsion = 15277.637507 eV Total energy + Delta-G solvation = -3062.694892 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.82263 -39.72221 -37.52781 -34.18228 -33.29853 -33.06125 -31.94221 -29.55898 -27.84600 -24.20134 -23.49709 -22.17877 -21.91475 -20.73417 -20.36707 -19.77347 -17.78068 -16.87986 -16.61065 -16.13836 -15.92426 -15.32889 -15.04506 -14.41939 -13.90437 -13.59923 -13.32126 -13.09167 -13.05395 -12.78803 -12.25856 -12.18375 -11.82541 -11.74780 -11.30883 -10.99470 -10.77707 -10.62058 -10.54493 -10.15256 -9.75273 -9.67069 -9.28752 -9.11561 -9.02464 -8.43886 -8.30897 -5.96884 -3.98252 1.41110 2.32475 2.64429 2.79589 3.12013 3.37484 3.40766 3.44782 3.66346 4.25299 4.39212 4.50051 4.56631 4.71493 4.81359 4.96953 5.05629 5.35604 5.39168 5.53100 5.63380 5.65643 5.69864 5.71173 5.74945 5.84803 6.23258 6.24735 6.40583 6.72528 6.88539 6.92945 7.16397 7.50379 7.71394 7.84196 8.03725 8.38035 8.47766 9.08606 9.65605 11.14612 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.044704 B = 0.002698 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.192004 B =10375.964069 C =10568.042183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.096 4.096 11 C -0.137 4.137 12 C 0.517 3.483 13 O -0.532 6.532 14 N -0.712 5.712 15 C 0.106 3.894 16 H 0.140 0.860 17 C -0.179 4.179 18 C -0.095 4.095 19 H 0.137 0.863 20 C 0.023 3.977 21 C -0.206 4.206 22 C -0.213 4.213 23 C -0.043 4.043 24 O -0.175 6.175 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.402 0.598 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.494 -25.684 2.025 26.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.134 4.134 11 C -0.177 4.177 12 C 0.306 3.694 13 O -0.407 6.407 14 N -0.363 5.363 15 C -0.001 4.001 16 H 0.157 0.843 17 C -0.218 4.218 18 C -0.115 4.115 19 H 0.154 0.846 20 C -0.027 4.027 21 C -0.225 4.225 22 C -0.232 4.232 23 C -0.111 4.111 24 O -0.071 6.071 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.237 0.763 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.166 0.834 36 H 0.166 0.834 37 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 4.306 -25.294 1.729 25.716 hybrid contribution -0.111 0.552 0.351 0.663 sum 4.195 -24.742 2.080 25.181 Atomic orbital electron populations 1.69954 1.06035 1.26652 1.51133 1.25020 0.94864 0.99249 0.95375 0.86647 0.79567 0.83040 0.78693 1.20227 1.21336 1.20221 1.21241 0.93170 0.91029 1.50272 0.92617 1.19126 0.93951 0.91425 0.97134 1.21460 0.98680 0.91468 1.01774 1.21860 0.98071 0.93848 1.03931 1.21354 0.90532 0.83382 0.74138 1.90683 1.17400 1.84511 1.48123 1.45579 1.09177 1.04993 1.76575 1.21697 0.95953 0.81244 1.01219 0.84264 1.23577 1.04774 1.02170 0.91230 1.21012 0.96758 0.97796 0.95894 0.84574 1.21279 0.87648 1.00635 0.93145 1.21533 1.01235 1.03924 0.95798 1.21840 0.96353 1.04989 1.00002 1.24024 0.99422 1.00218 0.87418 1.83978 1.29564 1.54036 1.39506 0.93013 0.96590 0.96586 0.92641 0.92643 0.89170 0.89146 0.76314 0.87430 0.87351 0.83422 0.83412 0.78056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.10 -2.06 4.44 -26.74 -0.12 -2.18 16 11 C -0.14 -2.21 5.70 -27.88 -0.16 -2.37 16 12 C 0.52 8.19 7.83 -10.98 -0.09 8.10 16 13 O -0.53 -10.68 15.55 5.56 0.09 -10.59 16 14 N -0.71 -8.11 5.57 -53.81 -0.30 -8.41 16 15 C 0.11 1.17 6.14 -67.93 -0.42 0.75 16 16 H 0.14 1.90 7.40 -51.93 -0.38 1.52 16 17 C -0.18 -1.53 10.09 -26.73 -0.27 -1.80 16 18 C -0.10 -0.84 6.16 -91.77 -0.57 -1.41 16 19 H 0.14 0.92 8.14 -51.93 -0.42 0.50 16 20 C 0.02 0.24 6.80 -35.63 -0.24 0.00 16 21 C -0.21 -2.02 10.81 -39.70 -0.43 -2.45 16 22 C -0.21 -1.87 10.91 -39.70 -0.43 -2.31 16 23 C -0.04 -0.37 12.09 29.42 0.36 -0.01 16 24 O -0.17 -1.87 10.36 5.71 0.06 -1.81 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 29 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 30 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.40 3.25 8.83 -40.82 -0.36 2.89 16 33 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.11 0.94 7.96 -51.93 -0.41 0.53 16 35 H 0.15 1.22 8.06 -52.48 -0.42 0.79 16 36 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.20 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 325.59 15.07 4.91 4.91 Total: -1.00 -34.55 325.59 -7.79 -42.34 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -5.35 Total: 0.03 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -2.91 Total: -17.13 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.44 Total: -34.81 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.15 Total: -12.41 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.55 -7.79 -42.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594047153.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.179 kcal (2) G-P(sol) polarization free energy of solvation -34.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds