Wall clock time and date at job start Mon Mar 30 2020 07:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.50708 * 109.47080 * 180.02562 * 11 10 9 13 13 O 1.21277 * 119.99772 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00117 * 179.97438 * 12 11 10 15 15 C 1.46499 * 120.00212 * 179.97438 * 14 12 11 16 16 H 1.08997 * 115.55067 * 9.27475 * 15 14 12 17 17 C 1.52999 * 117.49800 * 223.61086 * 15 14 12 18 18 C 1.52997 * 117.49931 * 154.98490 * 15 14 12 19 19 H 1.08995 * 117.50391 * 0.02562 * 18 15 14 20 20 C 1.50701 * 117.50000 * 214.97569 * 18 15 14 21 21 C 1.34511 * 125.78916 * 119.99685 * 20 18 15 22 22 C 1.41380 * 106.84291 * 180.02562 * 21 20 18 23 23 C 1.34519 * 106.84064 * 0.02562 * 22 21 20 24 24 O 1.34303 * 125.79097 * 299.69833 * 20 18 15 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 29 29 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 30 30 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 31 31 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 32 32 H 0.97005 * 120.00065 * 359.97438 * 14 12 11 33 33 H 1.09000 * 117.49965 * 359.97438 * 17 15 14 34 34 H 1.08999 * 117.50251 * 144.99800 * 17 15 14 35 35 H 1.08006 * 126.57871 * 0.04876 * 21 20 18 36 36 H 1.07996 * 126.58362 * 179.97438 * 22 21 20 37 37 H 1.07994 * 125.78843 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 6 2.4593 -6.1326 -0.0214 13 8 3.6517 -5.9110 -0.0199 14 7 2.0100 -7.4032 -0.0270 15 6 2.9619 -8.5168 -0.0319 16 1 4.0051 -8.2442 0.1279 17 6 2.6741 -9.6881 -0.9731 18 6 2.4861 -9.8554 0.5361 19 1 1.4648 -9.9077 0.9130 20 6 3.4957 -10.6965 1.2740 21 6 3.4055 -11.0879 2.5577 22 6 4.5612 -11.8537 2.8347 23 6 5.2888 -11.8840 1.7037 24 8 4.6353 -11.1870 0.7598 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5609 0.8844 27 1 0.6244 -2.5529 -0.8956 28 1 2.8718 -3.6005 -0.9002 29 1 2.8717 -3.6084 0.8798 30 1 0.8531 -5.0490 0.8724 31 1 0.8537 -5.0406 -0.9075 32 1 1.0563 -7.5804 -0.0279 33 1 1.7763 -9.6304 -1.5885 34 1 3.5279 -10.1862 -1.4325 35 1 2.6038 -10.8610 3.2450 36 1 4.8121 -12.3235 3.7741 37 1 6.2350 -12.3884 1.5748 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594047153.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:19 Heat of formation + Delta-G solvation = -36.460440 kcal Electronic energy + Delta-G solvation = -18341.299273 eV Core-core repulsion = 15277.637507 eV Total energy + Delta-G solvation = -3063.661766 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.51944 -40.89191 -38.47780 -36.10266 -34.32673 -33.95920 -33.77235 -30.37139 -29.56676 -26.02000 -24.20058 -23.37401 -22.63085 -22.08198 -21.41836 -20.95691 -18.75230 -18.37927 -17.65472 -17.55680 -16.78911 -16.70889 -16.47836 -15.78676 -15.15064 -15.04045 -14.27423 -14.20584 -13.99061 -13.74882 -13.71135 -13.45632 -13.16019 -12.84613 -12.67171 -12.50770 -12.49642 -12.42165 -11.77301 -11.54216 -11.46385 -11.27606 -10.88019 -10.80118 -10.53358 -10.02251 -9.19484 -8.19793 -6.29540 0.69196 1.39848 1.42634 1.50733 1.54388 1.68060 1.93314 2.19961 2.42326 2.89930 3.13162 3.53381 3.62733 3.82294 3.87464 4.10178 4.16678 4.22463 4.28872 4.35730 4.63573 4.77346 4.87120 4.91386 4.98589 4.99935 5.05027 5.11749 5.20416 5.20422 5.44740 5.55302 5.59314 5.76865 5.87930 6.19154 6.28382 6.51788 6.85784 7.24689 7.38931 8.91491 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.044704 B = 0.002698 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.192004 B =10375.964069 C =10568.042183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.550 4.550 8 H 0.050 0.950 9 C 0.026 3.974 10 C -0.084 4.084 11 C -0.128 4.128 12 C 0.520 3.480 13 O -0.584 6.584 14 N -0.687 5.687 15 C 0.077 3.923 16 H 0.106 0.894 17 C -0.160 4.160 18 C -0.076 4.076 19 H 0.163 0.837 20 C -0.004 4.004 21 C -0.216 4.216 22 C -0.228 4.228 23 C -0.046 4.046 24 O -0.193 6.193 25 H 0.265 0.735 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.040 0.960 29 H 0.039 0.961 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.422 0.578 33 H 0.132 0.868 34 H 0.105 0.895 35 H 0.160 0.840 36 H 0.168 0.832 37 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.047 -26.901 2.117 27.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.785 3.215 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.588 4.588 8 H 0.068 0.932 9 C -0.011 4.011 10 C -0.122 4.122 11 C -0.167 4.167 12 C 0.308 3.692 13 O -0.464 6.464 14 N -0.339 5.339 15 C -0.029 4.029 16 H 0.124 0.876 17 C -0.198 4.198 18 C -0.095 4.095 19 H 0.180 0.820 20 C -0.054 4.054 21 C -0.235 4.235 22 C -0.247 4.247 23 C -0.112 4.112 24 O -0.090 6.090 25 H 0.074 0.926 26 H 0.020 0.980 27 H 0.021 0.979 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.260 0.740 33 H 0.150 0.850 34 H 0.123 0.877 35 H 0.178 0.822 36 H 0.185 0.815 37 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 3.819 -26.563 1.822 26.898 hybrid contribution 0.048 0.836 0.358 0.911 sum 3.867 -25.727 2.180 26.107 Atomic orbital electron populations 1.70055 1.07450 1.27852 1.51519 1.25896 0.95837 1.03016 0.94697 0.85571 0.78412 0.78467 0.79034 1.19465 1.20308 1.19486 1.21682 0.93333 0.92912 1.50827 0.93151 1.19013 0.94178 0.92243 0.95636 1.21175 0.97685 0.93121 1.00248 1.21683 0.97749 0.91169 1.06146 1.21164 0.89476 0.84637 0.73875 1.90670 1.19317 1.85384 1.50996 1.45229 1.10368 1.03668 1.74627 1.21588 0.94513 0.81894 1.04939 0.87565 1.23642 1.05514 0.99192 0.91454 1.21129 0.97400 0.94955 0.96062 0.81979 1.21628 0.88207 1.01733 0.93832 1.21884 1.01956 1.03758 0.95881 1.22200 0.96193 1.05212 1.01072 1.24781 1.00184 0.99327 0.86956 1.83971 1.29954 1.54561 1.40501 0.92640 0.97954 0.97907 0.94147 0.94238 0.86995 0.86861 0.73961 0.85037 0.87689 0.82216 0.81454 0.74858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.37 13.29 21.45 0.28 -56.08 16 2 C 0.00 0.21 5.46 84.66 0.46 0.67 16 3 Si 0.96 45.33 29.54 68.60 2.03 47.36 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.55 -32.47 9.11 25.60 0.23 -32.23 16 8 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.08 -3.69 4.44 30.59 0.14 -3.56 16 11 C -0.13 -4.01 5.70 29.85 0.17 -3.84 16 12 C 0.52 16.23 7.83 87.66 0.69 16.92 16 13 O -0.58 -24.12 15.55 -3.02 -0.05 -24.17 16 14 N -0.69 -14.59 5.57 -442.55 -2.46 -17.06 16 15 C 0.08 1.65 6.14 44.99 0.28 1.93 16 16 H 0.11 3.04 7.40 -2.39 -0.02 3.02 16 17 C -0.16 -2.42 10.09 30.60 0.31 -2.11 16 18 C -0.08 -1.21 6.16 -11.54 -0.07 -1.28 16 19 H 0.16 1.67 8.14 -2.39 -0.02 1.65 16 20 C 0.00 -0.08 6.80 24.83 0.17 0.09 16 21 C -0.22 -3.98 10.81 22.19 0.24 -3.74 16 22 C -0.23 -3.69 10.91 22.19 0.24 -3.45 16 23 C -0.05 -0.71 12.09 66.97 0.81 0.10 16 24 O -0.19 -4.00 10.36 -2.50 -0.03 -4.03 16 25 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 26 H 0.00 0.11 8.14 -2.38 -0.02 0.10 16 27 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.04 1.86 8.10 -2.38 -0.02 1.84 16 29 H 0.04 1.82 8.10 -2.39 -0.02 1.80 16 30 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 31 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 32 H 0.42 5.57 8.83 -92.70 -0.82 4.75 16 33 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.10 1.70 7.96 -2.39 -0.02 1.68 16 35 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 36 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 37 H 0.24 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -76.50 325.59 3.83 -72.67 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 0.25 Total: 10.27 kcal Atomic # 6 Polarization: -32.77 SS G_CDS: 3.81 Total: -28.96 kcal Atomic # 7 Polarization: -70.96 SS G_CDS: -2.18 Total: -73.14 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.07 Total: -28.20 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -76.50 3.83 -72.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594047153.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.207 kcal (2) G-P(sol) polarization free energy of solvation -76.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds