Wall clock time and date at job start Mon Mar 30 2020 07:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38273 * 119.91060 * 2 1 4 4 C 1.38196 * 120.16449 * 179.97438 * 3 2 1 5 5 C 1.38721 * 119.98526 * 359.97438 * 4 3 2 6 6 N 1.40125 * 120.09275 * 179.97438 * 5 4 3 7 7 C 1.34773 * 119.99642 * 24.80804 * 6 5 4 8 8 O 1.21298 * 120.00381 * 5.53068 * 7 6 5 9 9 C 1.50703 * 119.99811 * 185.53396 * 7 6 5 10 10 C 1.53002 * 109.46931 * 179.97438 * 9 7 6 11 11 C 1.53008 * 109.46979 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47015 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99943 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99823 * 180.02562 * 12 11 10 15 15 N 1.31508 * 120.00016 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 120.00050 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46931 * 89.99901 * 16 14 12 18 18 H 1.48501 * 109.47072 * 210.00229 * 16 14 12 19 19 H 1.48502 * 109.47081 * 330.00079 * 16 14 12 20 20 C 1.39298 * 119.82089 * 0.02562 * 5 4 3 21 21 O 1.35976 * 120.08327 * 179.72087 * 20 5 4 22 22 C 1.38241 * 119.90641 * 179.97438 * 2 1 3 23 23 H 1.08996 * 109.47869 * 89.99815 * 1 2 3 24 24 H 1.08999 * 109.47333 * 209.99891 * 1 2 3 25 25 H 1.09009 * 109.46902 * 329.99769 * 1 2 3 26 26 H 1.08001 * 119.91989 * 359.96336 * 3 2 1 27 27 H 1.07996 * 120.01081 * 179.97438 * 4 3 2 28 28 H 0.96991 * 120.00167 * 204.81121 * 6 5 4 29 29 H 1.08992 * 109.47002 * 299.99659 * 9 7 6 30 30 H 1.08995 * 109.47139 * 60.00056 * 9 7 6 31 31 H 1.08992 * 109.47087 * 299.99715 * 10 9 7 32 32 H 1.08995 * 109.47076 * 60.00125 * 10 9 7 33 33 H 1.08994 * 109.46727 * 300.00257 * 11 10 9 34 34 H 1.08998 * 109.46713 * 59.99795 * 11 10 9 35 35 H 0.96996 * 120.00484 * 179.97438 * 15 14 12 36 36 H 0.96707 * 113.99357 * 89.99955 * 21 20 5 37 37 H 1.07999 * 120.00022 * 0.04591 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1986 0.0000 4 6 3.5785 1.2047 0.0005 5 6 4.2771 0.0062 0.0016 6 7 5.6783 0.0098 0.0016 7 6 6.3494 1.0715 0.4904 8 8 5.7448 1.9792 1.0212 9 6 7.8510 1.1308 0.3774 10 6 8.3587 2.4305 1.0051 11 6 9.8833 2.4905 0.8910 12 6 10.3834 3.7703 1.5098 13 1 9.6839 4.4707 1.9418 14 6 11.7340 4.0471 1.5246 15 7 12.1705 5.1637 2.0651 16 14 12.9440 2.8354 0.7782 17 1 13.1462 3.1584 -0.6571 18 1 14.2419 2.9275 1.4939 19 1 12.4058 1.4571 0.9044 20 6 3.5818 -1.2009 0.0016 21 8 4.2612 -2.3787 -0.0031 22 6 2.1963 -1.1983 0.0005 23 1 -0.3635 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6537 2.1323 -0.0006 27 1 4.1145 2.1422 0.0001 28 1 6.1652 -0.7517 -0.3502 29 1 8.2885 0.2798 0.8992 30 1 8.1378 1.0992 -0.6737 31 1 7.9212 3.2813 0.4830 32 1 8.0719 2.4626 2.0562 33 1 10.3204 1.6396 1.4134 34 1 10.1705 2.4581 -0.1600 35 1 13.1207 5.3584 2.0758 36 1 4.4608 -2.7211 0.8791 37 1 1.6548 -2.1327 0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594214135.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:16 Heat of formation + Delta-G solvation = -71.325531 kcal Electronic energy + Delta-G solvation = -18775.593783 eV Core-core repulsion = 15710.420153 eV Total energy + Delta-G solvation = -3065.173630 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.83287 -39.10667 -37.06450 -35.08331 -34.34997 -32.26819 -31.54247 -30.06669 -28.66131 -26.48966 -23.86528 -23.13744 -21.73681 -20.42203 -19.92969 -18.49569 -17.58744 -16.97154 -16.59624 -15.93843 -15.55502 -15.15490 -14.57978 -14.25932 -14.08883 -13.79869 -13.65197 -13.46170 -12.84207 -12.66445 -12.24510 -12.18282 -12.03482 -11.72257 -11.65158 -11.10676 -11.00647 -10.81566 -10.41886 -10.01768 -9.85979 -9.73065 -9.47151 -9.16495 -8.91204 -8.52936 -8.03054 -6.02489 -4.00627 0.99464 1.16012 2.64172 2.98767 3.30406 3.37706 3.40107 3.47148 3.96010 4.45444 4.63616 4.69073 4.84689 5.04215 5.09805 5.30645 5.31973 5.35854 5.45965 5.49073 5.52367 5.66590 5.75719 5.99682 6.07154 6.10855 6.33616 6.42373 6.49767 6.62381 6.74158 6.87513 7.30797 7.34693 7.37696 7.41534 7.80154 8.14271 8.56759 9.03922 9.59350 11.11176 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.043568 B = 0.003290 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.526490 B = 8509.531708 C = 9053.891886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.099 4.099 3 C -0.105 4.105 4 C -0.117 4.117 5 C 0.130 3.870 6 N -0.674 5.674 7 C 0.511 3.489 8 O -0.513 6.513 9 C -0.140 4.140 10 C -0.088 4.088 11 C -0.014 4.014 12 C -0.520 4.520 13 H 0.073 0.927 14 C 0.065 3.935 15 N -0.904 5.904 16 Si 0.881 3.119 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.266 1.266 20 C 0.068 3.932 21 O -0.496 6.496 22 C -0.124 4.124 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.127 0.873 27 H 0.152 0.848 28 H 0.414 0.586 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.016 0.984 34 H 0.011 0.989 35 H 0.263 0.737 36 H 0.387 0.613 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.450 -15.880 -5.518 26.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.100 4.100 3 C -0.123 4.123 4 C -0.137 4.137 5 C 0.034 3.966 6 N -0.319 5.319 7 C 0.301 3.699 8 O -0.387 6.387 9 C -0.180 4.180 10 C -0.126 4.126 11 C -0.052 4.052 12 C -0.558 4.558 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.543 5.543 16 Si 0.709 3.291 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.190 1.190 20 C 0.021 3.979 21 O -0.305 6.305 22 C -0.143 4.143 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.145 0.855 27 H 0.170 0.830 28 H 0.250 0.750 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.034 0.966 34 H 0.030 0.970 35 H 0.072 0.928 36 H 0.242 0.758 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.655 -15.029 -5.705 26.173 hybrid contribution 1.109 -1.097 -0.037 1.560 sum -19.546 -16.126 -5.742 25.981 Atomic orbital electron populations 1.20748 0.90940 1.02740 1.02268 1.19755 0.96179 0.92572 1.01464 1.21009 0.93599 0.97716 1.00009 1.21433 0.94131 0.98145 0.99995 1.18230 0.83485 0.93614 1.01248 1.43741 1.04236 1.21801 1.62158 1.21462 0.91310 0.80843 0.76290 1.90664 1.69996 1.37011 1.41043 1.21914 0.88838 1.03314 1.03960 1.21293 0.97754 0.93090 1.00464 1.19605 0.91318 0.97834 0.96411 1.21149 0.93013 1.03723 1.37909 0.90919 1.25052 0.98418 0.95163 0.94992 1.69916 1.14658 1.24312 1.45414 0.86760 0.80591 0.82345 0.79441 1.20326 1.21428 1.19045 1.18079 0.89958 0.83827 1.06040 1.84839 1.76332 1.35744 1.33600 1.21030 0.92437 0.98376 1.02495 0.91247 0.91690 0.91432 0.85477 0.83032 0.74965 0.88977 0.88833 0.91949 0.91939 0.96613 0.97028 0.92753 0.75786 0.85319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.01 36.01 0.36 -0.39 16 2 C -0.10 -0.96 5.88 -104.61 -0.62 -1.58 16 3 C -0.10 -1.16 9.69 -39.58 -0.38 -1.54 16 4 C -0.12 -1.56 8.72 -39.42 -0.34 -1.91 16 5 C 0.13 1.66 6.45 -83.49 -0.54 1.12 16 6 N -0.67 -8.16 5.29 -9.75 -0.05 -8.21 16 7 C 0.51 7.67 7.64 -10.99 -0.08 7.59 16 8 O -0.51 -9.47 13.15 5.54 0.07 -9.39 16 9 C -0.14 -2.08 5.70 -27.88 -0.16 -2.23 16 10 C -0.09 -1.77 4.44 -26.73 -0.12 -1.88 16 11 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 12 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 13 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 14 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 15 N -0.90 -28.24 13.96 55.43 0.77 -27.46 16 16 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 20 C 0.07 0.74 6.72 -39.07 -0.26 0.48 16 21 O -0.50 -4.50 12.92 -19.67 -0.25 -4.75 16 22 C -0.12 -1.23 9.63 -39.46 -0.38 -1.61 16 23 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 25 H 0.07 0.41 8.08 -51.92 -0.42 -0.01 16 26 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 27 H 0.15 2.30 5.79 -52.49 -0.30 2.00 16 28 H 0.41 3.92 8.34 -40.82 -0.34 3.58 16 29 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 32 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 33 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 34 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.39 1.98 9.06 45.56 0.41 2.39 16 37 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 314.76 15.07 4.74 4.74 Total: -1.00 -34.32 314.76 -6.83 -41.15 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -4.38 Total: 2.94 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -3.07 Total: -15.97 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.72 Total: -35.67 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.18 Total: -14.15 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.32 -6.83 -41.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594214135.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.177 kcal (2) G-P(sol) polarization free energy of solvation -34.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds