Wall clock time and date at job start Mon Mar 30 2020 07:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38273 * 119.91060 * 2 1 4 4 C 1.38196 * 120.16449 * 179.97438 * 3 2 1 5 5 C 1.38721 * 119.98526 * 359.97438 * 4 3 2 6 6 N 1.40125 * 120.09275 * 179.97438 * 5 4 3 7 7 C 1.34773 * 119.99642 * 24.80804 * 6 5 4 8 8 O 1.21298 * 120.00381 * 5.53068 * 7 6 5 9 9 C 1.50703 * 119.99811 * 185.53396 * 7 6 5 10 10 C 1.53002 * 109.46931 * 179.97438 * 9 7 6 11 11 C 1.53008 * 109.46979 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47015 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99943 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99823 * 180.02562 * 12 11 10 15 15 N 1.31508 * 120.00016 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 120.00050 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46931 * 89.99901 * 16 14 12 18 18 H 1.48501 * 109.47072 * 210.00229 * 16 14 12 19 19 H 1.48502 * 109.47081 * 330.00079 * 16 14 12 20 20 C 1.39298 * 119.82089 * 0.02562 * 5 4 3 21 21 O 1.35976 * 120.08327 * 179.72087 * 20 5 4 22 22 C 1.38241 * 119.90641 * 179.97438 * 2 1 3 23 23 H 1.08996 * 109.47869 * 89.99815 * 1 2 3 24 24 H 1.08999 * 109.47333 * 209.99891 * 1 2 3 25 25 H 1.09009 * 109.46902 * 329.99769 * 1 2 3 26 26 H 1.08001 * 119.91989 * 359.96336 * 3 2 1 27 27 H 1.07996 * 120.01081 * 179.97438 * 4 3 2 28 28 H 0.96991 * 120.00167 * 204.81121 * 6 5 4 29 29 H 1.08992 * 109.47002 * 299.99659 * 9 7 6 30 30 H 1.08995 * 109.47139 * 60.00056 * 9 7 6 31 31 H 1.08992 * 109.47087 * 299.99715 * 10 9 7 32 32 H 1.08995 * 109.47076 * 60.00125 * 10 9 7 33 33 H 1.08994 * 109.46727 * 300.00257 * 11 10 9 34 34 H 1.08998 * 109.46713 * 59.99795 * 11 10 9 35 35 H 0.96996 * 120.00484 * 179.97438 * 15 14 12 36 36 H 0.96707 * 113.99357 * 89.99955 * 21 20 5 37 37 H 1.07999 * 120.00022 * 0.04591 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1986 0.0000 4 6 3.5785 1.2047 0.0005 5 6 4.2771 0.0062 0.0016 6 7 5.6783 0.0098 0.0016 7 6 6.3494 1.0715 0.4904 8 8 5.7448 1.9792 1.0212 9 6 7.8510 1.1308 0.3774 10 6 8.3587 2.4305 1.0051 11 6 9.8833 2.4905 0.8910 12 6 10.3834 3.7703 1.5098 13 1 9.6839 4.4707 1.9418 14 6 11.7340 4.0471 1.5246 15 7 12.1705 5.1637 2.0651 16 14 12.9440 2.8354 0.7782 17 1 13.1462 3.1584 -0.6571 18 1 14.2419 2.9275 1.4939 19 1 12.4058 1.4571 0.9044 20 6 3.5818 -1.2009 0.0016 21 8 4.2612 -2.3787 -0.0031 22 6 2.1963 -1.1983 0.0005 23 1 -0.3635 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6537 2.1323 -0.0006 27 1 4.1145 2.1422 0.0001 28 1 6.1652 -0.7517 -0.3502 29 1 8.2885 0.2798 0.8992 30 1 8.1378 1.0992 -0.6737 31 1 7.9212 3.2813 0.4830 32 1 8.0719 2.4626 2.0562 33 1 10.3204 1.6396 1.4134 34 1 10.1705 2.4581 -0.1600 35 1 13.1207 5.3584 2.0758 36 1 4.4608 -2.7211 0.8791 37 1 1.6548 -2.1327 0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594214135.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:16 Heat of formation + Delta-G solvation = -96.264253 kcal Electronic energy + Delta-G solvation = -18776.675207 eV Core-core repulsion = 15710.420153 eV Total energy + Delta-G solvation = -3066.255054 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.81192 -40.10257 -37.80010 -36.34575 -35.88151 -34.19292 -32.53021 -30.86596 -30.26238 -27.48134 -25.46337 -24.06040 -22.77002 -21.87052 -21.24100 -19.40342 -18.87106 -18.32667 -18.02677 -16.99004 -16.55272 -16.34819 -15.95035 -15.47887 -15.31016 -14.89471 -14.78665 -14.48460 -14.39220 -13.85037 -13.44968 -13.37784 -12.96439 -12.89376 -12.73769 -12.51697 -12.40987 -11.86528 -11.79402 -11.73149 -11.50840 -11.37720 -11.30846 -10.75257 -10.68122 -9.75754 -8.91464 -8.27923 -6.33641 0.14559 0.30755 1.38744 1.42019 1.53982 1.54718 1.98096 2.38907 2.64861 3.07343 3.21220 3.67375 3.91158 4.01079 4.08180 4.21906 4.29838 4.40441 4.50987 4.71363 4.76118 4.88214 4.88669 4.93493 5.00668 5.03171 5.10244 5.22980 5.30500 5.47037 5.55790 5.59132 5.62284 5.67714 5.92051 6.30086 6.38319 6.75273 6.75306 7.08660 7.30814 8.89760 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.043568 B = 0.003290 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.526490 B = 8509.531708 C = 9053.891886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.093 4.093 3 C -0.116 4.116 4 C -0.140 4.140 5 C 0.102 3.898 6 N -0.656 5.656 7 C 0.512 3.488 8 O -0.559 6.559 9 C -0.128 4.128 10 C -0.081 4.081 11 C -0.010 4.010 12 C -0.540 4.540 13 H 0.020 0.980 14 C -0.004 4.004 15 N -0.957 5.957 16 Si 0.961 3.039 17 H -0.265 1.265 18 H -0.287 1.287 19 H -0.235 1.235 20 C 0.077 3.923 21 O -0.497 6.497 22 C -0.127 4.127 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.138 0.862 27 H 0.124 0.876 28 H 0.428 0.572 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.038 0.962 32 H 0.039 0.961 33 H 0.032 0.968 34 H 0.029 0.971 35 H 0.266 0.734 36 H 0.406 0.594 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.993 -19.785 -6.982 29.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.094 4.094 3 C -0.135 4.135 4 C -0.160 4.160 5 C 0.007 3.993 6 N -0.302 5.302 7 C 0.302 3.698 8 O -0.436 6.436 9 C -0.168 4.168 10 C -0.119 4.119 11 C -0.047 4.047 12 C -0.578 4.578 13 H 0.038 0.962 14 C -0.200 4.200 15 N -0.598 5.598 16 Si 0.784 3.216 17 H -0.190 1.190 18 H -0.213 1.213 19 H -0.157 1.157 20 C 0.029 3.971 21 O -0.309 6.309 22 C -0.146 4.146 23 H 0.099 0.901 24 H 0.099 0.901 25 H 0.092 0.908 26 H 0.156 0.844 27 H 0.142 0.858 28 H 0.267 0.733 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.265 0.735 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -21.228 -18.989 -7.178 29.372 hybrid contribution 1.146 0.170 0.470 1.250 sum -20.082 -18.819 -6.708 28.328 Atomic orbital electron populations 1.20821 0.88599 1.03862 1.03320 1.20121 0.97859 0.91917 0.99502 1.21199 0.92874 0.99141 1.00283 1.21350 0.95270 0.97576 1.01811 1.18398 0.83547 0.94227 1.03159 1.43439 1.04273 1.21297 1.61196 1.21454 0.91438 0.80926 0.75968 1.90668 1.70771 1.38845 1.43356 1.21751 0.88656 1.00956 1.05410 1.21056 0.95839 0.95622 0.99423 1.19548 0.93205 0.95155 0.96788 1.21561 0.92754 1.05341 1.38149 0.96179 1.26197 1.00854 0.97491 0.95408 1.70101 1.15404 1.27009 1.47301 0.85500 0.77043 0.80510 0.78596 1.18991 1.21287 1.15747 1.18122 0.90411 0.83682 1.04838 1.84789 1.76119 1.34682 1.35330 1.21370 0.92146 0.99444 1.01617 0.90083 0.90111 0.90849 0.84399 0.85839 0.73284 0.85901 0.86099 0.94311 0.94241 0.94988 0.95232 0.92506 0.73512 0.82800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.01 71.24 0.71 -0.47 16 2 C -0.09 -1.63 5.88 -19.85 -0.12 -1.74 16 3 C -0.12 -2.54 9.69 22.27 0.22 -2.33 16 4 C -0.14 -3.85 8.72 22.38 0.20 -3.65 16 5 C 0.10 2.53 6.45 38.19 0.25 2.77 16 6 N -0.66 -15.04 5.29 -303.13 -1.60 -16.64 16 7 C 0.51 15.20 7.64 87.66 0.67 15.87 16 8 O -0.56 -21.61 13.15 -3.08 -0.04 -21.65 16 9 C -0.13 -3.54 5.70 29.85 0.17 -3.37 16 10 C -0.08 -3.30 4.44 30.60 0.14 -3.16 16 11 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 12 C -0.54 -32.29 9.66 25.60 0.25 -32.04 16 13 H 0.02 1.35 7.99 -2.91 -0.02 1.33 16 14 C 0.00 -0.22 5.47 84.66 0.46 0.25 16 15 N -0.96 -61.81 13.96 21.45 0.30 -61.51 16 16 Si 0.96 43.74 27.47 68.60 1.88 45.62 16 17 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 18 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 19 H -0.23 -9.44 6.54 99.48 0.65 -8.79 16 20 C 0.08 1.51 6.72 22.60 0.15 1.66 16 21 O -0.50 -7.48 12.92 -93.28 -1.21 -8.68 16 22 C -0.13 -2.16 9.63 22.35 0.22 -1.95 16 23 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 25 H 0.07 0.72 8.08 -2.38 -0.02 0.70 16 26 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 27 H 0.12 4.08 5.79 -2.91 -0.02 4.06 16 28 H 0.43 7.01 8.34 -92.71 -0.77 6.24 16 29 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 32 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 33 H 0.03 1.38 7.20 -2.39 -0.02 1.36 16 34 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16 35 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 36 H 0.41 2.81 9.06 -74.05 -0.67 2.13 16 37 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -78.86 314.76 2.35 -76.51 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -0.41 Total: 14.83 kcal Atomic # 6 Polarization: -31.90 SS G_CDS: 3.43 Total: -28.47 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -1.30 Total: -78.16 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -1.25 Total: -30.33 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.62 kcal Total: -78.86 2.35 -76.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594214135.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.757 kcal (2) G-P(sol) polarization free energy of solvation -78.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds