Wall clock time and date at job start Mon Mar 30 2020 07:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38215 * 119.95942 * 2 1 4 4 C 1.38119 * 120.12675 * 180.27418 * 3 2 1 5 5 C 1.38932 * 120.04011 * 359.44923 * 4 3 2 6 6 N 1.39919 * 120.04537 * 180.25246 * 5 4 3 7 7 C 1.34772 * 119.99972 * 144.90427 * 6 5 4 8 8 O 1.21286 * 120.00101 * 4.62739 * 7 6 5 9 9 C 1.50706 * 120.00092 * 184.61918 * 7 6 5 10 10 C 1.52995 * 109.47255 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46935 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.46826 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00657 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99953 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99542 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00109 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47226 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46992 * 119.99782 * 16 14 12 19 19 H 1.48497 * 109.47324 * 240.00130 * 16 14 12 20 20 C 1.38761 * 119.91478 * 0.27280 * 5 4 3 21 21 C 1.38625 * 119.87387 * 359.97438 * 20 5 4 22 22 O 1.35897 * 120.02204 * 180.02562 * 21 20 5 23 23 H 1.08994 * 109.47185 * 270.27809 * 1 2 3 24 24 H 1.09000 * 109.47190 * 30.28133 * 1 2 3 25 25 H 1.09003 * 109.46939 * 150.27682 * 1 2 3 26 26 H 1.08001 * 119.93781 * 0.02562 * 3 2 1 27 27 H 1.08004 * 119.98224 * 179.71811 * 4 3 2 28 28 H 0.97003 * 119.99862 * 324.90544 * 6 5 4 29 29 H 1.08999 * 109.47531 * 300.00717 * 9 7 6 30 30 H 1.09006 * 109.46799 * 60.00190 * 9 7 6 31 31 H 1.09002 * 109.47081 * 299.99857 * 10 9 7 32 32 H 1.08993 * 109.47495 * 60.00429 * 10 9 7 33 33 H 1.09002 * 109.46736 * 299.99598 * 11 10 9 34 34 H 1.08990 * 109.47389 * 60.00096 * 11 10 9 35 35 H 0.97002 * 119.99766 * 180.02562 * 15 14 12 36 36 H 1.07995 * 120.05992 * 179.97438 * 20 5 4 37 37 H 0.96701 * 113.99968 * 90.00041 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1975 0.0000 4 6 3.5784 1.2015 -0.0057 5 6 4.2774 0.0009 0.0001 6 7 5.6766 0.0049 -0.0004 7 6 6.3534 -0.9448 0.6752 8 8 5.7527 -1.8505 1.2135 9 6 7.8567 -0.8814 0.7617 10 6 8.3711 -2.0690 1.5776 11 6 9.8972 -2.0042 1.6658 12 6 10.4040 -3.1743 2.4690 13 1 9.7074 -3.8922 2.8761 14 6 11.7572 -3.3285 2.6840 15 7 12.6055 -2.4541 2.1887 16 14 12.3854 -4.7785 3.6801 17 1 11.2371 -5.6098 4.1225 18 1 13.2952 -5.5987 2.8407 19 1 13.1232 -4.2802 4.8686 20 6 3.5862 -1.2023 0.0059 21 6 2.2000 -1.2023 0.0064 22 8 1.5200 -2.3789 0.0126 23 1 -0.3633 0.0050 1.0276 24 1 -0.3633 0.8874 -0.5182 25 1 -0.3633 -0.8925 -0.5095 26 1 1.6556 2.1318 0.0004 27 1 4.1154 2.1386 -0.0103 28 1 6.1595 0.6912 -0.4870 29 1 8.2803 -0.9197 -0.2419 30 1 8.1538 0.0488 1.2462 31 1 7.9476 -2.0310 2.5812 32 1 8.0741 -2.9989 1.0928 33 1 10.3211 -2.0419 0.6623 34 1 10.1940 -1.0744 2.1509 35 1 13.5575 -2.5628 2.3397 36 1 4.1273 -2.1370 0.0100 37 1 1.3236 -2.7149 0.8978 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594315409.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:18 Heat of formation + Delta-G solvation = -75.787250 kcal Electronic energy + Delta-G solvation = -18670.711234 eV Core-core repulsion = 15605.344130 eV Total energy + Delta-G solvation = -3065.367104 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.66862 -39.23678 -36.92075 -34.82310 -34.23572 -32.26027 -31.54351 -30.09347 -28.18841 -26.28741 -23.91514 -23.07059 -21.72746 -20.61080 -19.87084 -18.70864 -17.17559 -16.58783 -16.19243 -15.91840 -15.59079 -15.14173 -14.84659 -14.43386 -13.93864 -13.63231 -13.54607 -13.36121 -12.60801 -12.50951 -12.33086 -12.15317 -11.84023 -11.65965 -11.41783 -10.86610 -10.83975 -10.65321 -10.53244 -10.19291 -9.72131 -9.71402 -9.32864 -9.04917 -8.84117 -8.34542 -8.12571 -5.99940 -4.01369 1.02293 1.19341 2.69793 3.03556 3.32500 3.39902 3.45554 3.51980 4.10920 4.47728 4.65060 4.78722 4.93006 4.98711 5.16403 5.33115 5.36405 5.40438 5.55734 5.61272 5.63094 5.72874 5.77856 6.08453 6.14310 6.23755 6.30450 6.39701 6.66242 6.79053 6.86868 7.11100 7.36905 7.53293 7.67907 7.79845 8.00445 8.22412 8.44131 9.05890 9.62847 11.11626 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.043301 B = 0.003089 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.473840 B = 9062.924295 C = 9576.455322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.134 4.134 3 C -0.089 4.089 4 C -0.154 4.154 5 C 0.163 3.837 6 N -0.682 5.682 7 C 0.512 3.488 8 O -0.517 6.517 9 C -0.137 4.137 10 C -0.096 4.096 11 C 0.020 3.980 12 C -0.518 4.518 13 H 0.057 0.943 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.146 4.146 21 C 0.121 3.879 22 O -0.496 6.496 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.412 0.588 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.016 0.984 34 H 0.016 0.984 35 H 0.259 0.741 36 H 0.147 0.853 37 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.376 9.491 -5.984 24.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.135 4.135 3 C -0.107 4.107 4 C -0.175 4.175 5 C 0.068 3.932 6 N -0.328 5.328 7 C 0.302 3.698 8 O -0.391 6.391 9 C -0.177 4.177 10 C -0.134 4.134 11 C -0.017 4.017 12 C -0.556 4.556 13 H 0.075 0.925 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.166 4.166 21 C 0.076 3.924 22 O -0.306 6.306 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.146 0.854 27 H 0.146 0.854 28 H 0.248 0.752 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.069 0.931 36 H 0.165 0.835 37 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -21.508 8.895 -6.178 24.081 hybrid contribution 0.766 -0.382 0.786 1.162 sum -20.742 8.514 -5.392 23.061 Atomic orbital electron populations 1.20637 0.90796 1.02966 1.02077 1.20180 0.96702 0.92533 1.04123 1.20674 0.93245 0.97192 0.99614 1.20931 0.94441 0.96625 1.05459 1.17612 0.83222 0.93336 0.99032 1.43802 1.04200 1.32415 1.52416 1.21550 0.91397 0.80481 0.76374 1.90672 1.70407 1.33236 1.44783 1.21888 0.88335 1.03645 1.03818 1.21472 0.99249 0.94396 0.98268 1.19134 0.88144 0.97259 0.97158 1.21302 0.91882 1.09659 1.32787 0.92510 1.25025 0.97077 0.96421 0.96018 1.69970 1.02300 1.35708 1.45739 0.86532 0.78869 0.82686 0.79930 1.19672 1.21021 1.21024 1.21582 0.93437 0.99065 1.02553 1.18100 0.89245 0.84898 1.00160 1.84755 1.76044 1.36281 1.33535 0.91571 0.91680 0.91033 0.85390 0.85432 0.75212 0.88912 0.88891 0.92595 0.92571 0.96538 0.96545 0.93093 0.83531 0.75325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 9.79 36.01 0.35 -0.49 16 2 C -0.13 -1.40 5.90 -104.43 -0.62 -2.01 16 3 C -0.09 -0.84 9.69 -39.63 -0.38 -1.22 16 4 C -0.15 -1.56 9.96 -39.37 -0.39 -1.95 16 5 C 0.16 2.06 6.30 -83.72 -0.53 1.54 16 6 N -0.68 -8.21 5.34 -9.88 -0.05 -8.26 16 7 C 0.51 7.99 7.67 -10.98 -0.08 7.90 16 8 O -0.52 -9.92 13.42 5.55 0.07 -9.84 16 9 C -0.14 -2.16 5.70 -27.88 -0.16 -2.32 16 10 C -0.10 -2.02 4.44 -26.73 -0.12 -2.13 16 11 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 12 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 13 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 16 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 C -0.15 -2.06 8.63 -39.25 -0.34 -2.40 16 21 C 0.12 1.50 6.67 -39.24 -0.26 1.23 16 22 O -0.50 -5.55 12.54 -19.42 -0.24 -5.79 16 23 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 25 H 0.07 0.58 7.53 -51.93 -0.39 0.19 16 26 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 27 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 28 H 0.41 3.49 8.82 -40.82 -0.36 3.13 16 29 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.06 1.23 8.10 -51.93 -0.42 0.80 16 32 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.15 2.40 6.22 -52.49 -0.33 2.07 16 37 H 0.39 2.74 9.06 45.56 0.41 3.15 16 LS Contribution 318.53 15.07 4.80 4.80 Total: -1.00 -34.38 318.53 -7.21 -41.60 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -4.43 Total: 1.98 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -3.08 Total: -15.18 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.68 Total: -34.48 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.17 Total: -15.64 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.38 -7.21 -41.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594315409.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.192 kcal (2) G-P(sol) polarization free energy of solvation -34.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds