Wall clock time and date at job start Mon Mar 30 2020 07:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38215 * 119.95942 * 2 1 4 4 C 1.38119 * 120.12675 * 180.27418 * 3 2 1 5 5 C 1.38932 * 120.04011 * 359.44923 * 4 3 2 6 6 N 1.39919 * 120.04537 * 180.25246 * 5 4 3 7 7 C 1.34772 * 119.99972 * 144.90427 * 6 5 4 8 8 O 1.21286 * 120.00101 * 4.62739 * 7 6 5 9 9 C 1.50706 * 120.00092 * 184.61918 * 7 6 5 10 10 C 1.52995 * 109.47255 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46935 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.46826 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00657 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99953 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99542 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00109 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47226 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46992 * 119.99782 * 16 14 12 19 19 H 1.48497 * 109.47324 * 240.00130 * 16 14 12 20 20 C 1.38761 * 119.91478 * 0.27280 * 5 4 3 21 21 C 1.38625 * 119.87387 * 359.97438 * 20 5 4 22 22 O 1.35897 * 120.02204 * 180.02562 * 21 20 5 23 23 H 1.08994 * 109.47185 * 270.27809 * 1 2 3 24 24 H 1.09000 * 109.47190 * 30.28133 * 1 2 3 25 25 H 1.09003 * 109.46939 * 150.27682 * 1 2 3 26 26 H 1.08001 * 119.93781 * 0.02562 * 3 2 1 27 27 H 1.08004 * 119.98224 * 179.71811 * 4 3 2 28 28 H 0.97003 * 119.99862 * 324.90544 * 6 5 4 29 29 H 1.08999 * 109.47531 * 300.00717 * 9 7 6 30 30 H 1.09006 * 109.46799 * 60.00190 * 9 7 6 31 31 H 1.09002 * 109.47081 * 299.99857 * 10 9 7 32 32 H 1.08993 * 109.47495 * 60.00429 * 10 9 7 33 33 H 1.09002 * 109.46736 * 299.99598 * 11 10 9 34 34 H 1.08990 * 109.47389 * 60.00096 * 11 10 9 35 35 H 0.97002 * 119.99766 * 180.02562 * 15 14 12 36 36 H 1.07995 * 120.05992 * 179.97438 * 20 5 4 37 37 H 0.96701 * 113.99968 * 90.00041 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1975 0.0000 4 6 3.5784 1.2015 -0.0057 5 6 4.2774 0.0009 0.0001 6 7 5.6766 0.0049 -0.0004 7 6 6.3534 -0.9448 0.6752 8 8 5.7527 -1.8505 1.2135 9 6 7.8567 -0.8814 0.7617 10 6 8.3711 -2.0690 1.5776 11 6 9.8972 -2.0042 1.6658 12 6 10.4040 -3.1743 2.4690 13 1 9.7074 -3.8922 2.8761 14 6 11.7572 -3.3285 2.6840 15 7 12.6055 -2.4541 2.1887 16 14 12.3854 -4.7785 3.6801 17 1 11.2371 -5.6098 4.1225 18 1 13.2952 -5.5987 2.8407 19 1 13.1232 -4.2802 4.8686 20 6 3.5862 -1.2023 0.0059 21 6 2.2000 -1.2023 0.0064 22 8 1.5200 -2.3789 0.0126 23 1 -0.3633 0.0050 1.0276 24 1 -0.3633 0.8874 -0.5182 25 1 -0.3633 -0.8925 -0.5095 26 1 1.6556 2.1318 0.0004 27 1 4.1154 2.1386 -0.0103 28 1 6.1595 0.6912 -0.4870 29 1 8.2803 -0.9197 -0.2419 30 1 8.1538 0.0488 1.2462 31 1 7.9476 -2.0310 2.5812 32 1 8.0741 -2.9989 1.0928 33 1 10.3211 -2.0419 0.6623 34 1 10.1940 -1.0744 2.1509 35 1 13.5575 -2.5628 2.3397 36 1 4.1273 -2.1370 0.0100 37 1 1.3236 -2.7149 0.8978 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594315409.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:18 Heat of formation + Delta-G solvation = -99.841848 kcal Electronic energy + Delta-G solvation = -18671.754320 eV Core-core repulsion = 15605.344130 eV Total energy + Delta-G solvation = -3066.410190 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.69493 -40.25679 -37.85555 -36.20487 -35.72517 -34.10131 -32.57612 -30.94165 -29.86100 -27.35423 -25.64243 -24.00642 -22.86349 -21.96878 -21.26653 -19.65429 -18.63841 -18.02370 -17.53438 -17.06324 -16.53356 -16.42442 -16.26465 -15.79084 -15.16640 -14.93016 -14.51915 -14.29030 -14.17356 -13.78310 -13.47280 -13.21130 -13.16708 -12.93724 -12.64113 -12.54624 -12.40814 -12.38137 -11.76071 -11.58254 -11.45977 -11.25648 -11.13018 -10.73585 -10.55538 -9.72621 -9.02003 -8.21638 -6.31266 0.16230 0.32080 1.38509 1.39063 1.52566 1.53122 2.00650 2.40878 2.66961 3.11611 3.28139 3.76641 3.94263 4.02126 4.17055 4.18735 4.23683 4.43634 4.53682 4.75502 4.83270 4.85370 4.90912 4.94395 5.07332 5.13283 5.18105 5.27846 5.34169 5.47367 5.53537 5.57583 5.74303 5.85812 5.93416 6.26177 6.40089 6.78248 6.84444 7.11327 7.37477 8.90081 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.043301 B = 0.003089 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.473840 B = 9062.924295 C = 9576.455322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.134 4.134 3 C -0.084 4.084 4 C -0.145 4.145 5 C 0.140 3.860 6 N -0.662 5.662 7 C 0.515 3.485 8 O -0.561 6.561 9 C -0.127 4.127 10 C -0.083 4.083 11 C 0.026 3.974 12 C -0.547 4.547 13 H 0.050 0.950 14 C 0.003 3.997 15 N -0.929 5.929 16 Si 0.961 3.039 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.275 1.275 20 C -0.175 4.175 21 C 0.105 3.895 22 O -0.508 6.508 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.165 0.835 27 H 0.159 0.841 28 H 0.430 0.570 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.002 0.998 34 H 0.003 0.997 35 H 0.265 0.735 36 H 0.113 0.887 37 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.566 11.237 -6.086 25.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.136 4.136 3 C -0.102 4.102 4 C -0.165 4.165 5 C 0.046 3.954 6 N -0.309 5.309 7 C 0.305 3.695 8 O -0.439 6.439 9 C -0.166 4.166 10 C -0.122 4.122 11 C -0.011 4.011 12 C -0.585 4.585 13 H 0.068 0.932 14 C -0.195 4.195 15 N -0.569 5.569 16 Si 0.786 3.214 17 H -0.193 1.193 18 H -0.201 1.201 19 H -0.200 1.200 20 C -0.196 4.196 21 C 0.060 3.940 22 O -0.320 6.320 23 H 0.097 0.903 24 H 0.104 0.896 25 H 0.082 0.918 26 H 0.182 0.818 27 H 0.177 0.823 28 H 0.270 0.730 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.021 0.979 34 H 0.022 0.978 35 H 0.074 0.926 36 H 0.131 0.869 37 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -22.712 10.678 -6.303 25.876 hybrid contribution 1.059 -0.892 0.793 1.596 sum -21.653 9.785 -5.510 24.392 Atomic orbital electron populations 1.20685 0.88807 1.03625 1.03089 1.20539 0.98217 0.92039 1.02771 1.21144 0.93135 0.98176 0.97767 1.21269 0.94951 0.96588 1.03663 1.17816 0.83144 0.93924 1.00559 1.43482 1.04339 1.31722 1.51400 1.21379 0.91194 0.80588 0.76371 1.90671 1.71071 1.35159 1.46986 1.21703 0.88722 1.02008 1.04205 1.21175 0.96218 0.96330 0.98437 1.19018 0.90948 0.95603 0.95562 1.21722 0.92470 1.10724 1.33612 0.93160 1.25895 0.97251 0.99300 0.97029 1.70065 1.02780 1.37372 1.46692 0.85460 0.78295 0.79150 0.78533 1.19293 1.20087 1.20014 1.21513 0.94491 0.98565 1.05057 1.18280 0.88835 0.85993 1.00858 1.84704 1.75816 1.36431 1.35038 0.90291 0.89637 0.91756 0.81786 0.82344 0.73016 0.86788 0.86600 0.94019 0.94117 0.97939 0.97840 0.92639 0.86904 0.73641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.79 71.24 0.70 -0.66 16 2 C -0.13 -2.53 5.90 -19.74 -0.12 -2.64 16 3 C -0.08 -1.29 9.69 22.24 0.22 -1.08 16 4 C -0.14 -2.50 9.96 22.41 0.22 -2.28 16 5 C 0.14 3.42 6.30 38.14 0.24 3.66 16 6 N -0.66 -15.23 5.34 -303.55 -1.62 -16.85 16 7 C 0.51 16.10 7.67 87.66 0.67 16.77 16 8 O -0.56 -22.48 13.42 -3.05 -0.04 -22.52 16 9 C -0.13 -3.93 5.70 29.85 0.17 -3.76 16 10 C -0.08 -3.61 4.44 30.59 0.14 -3.47 16 11 C 0.03 1.35 4.97 29.85 0.15 1.50 16 12 C -0.55 -32.14 9.11 25.60 0.23 -31.90 16 13 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 14 C 0.00 0.19 5.46 84.66 0.46 0.65 16 15 N -0.93 -56.18 13.29 21.45 0.28 -55.90 16 16 Si 0.96 45.21 29.54 68.60 2.03 47.24 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 20 C -0.18 -5.13 8.63 22.49 0.19 -4.93 16 21 C 0.11 2.61 6.67 22.49 0.15 2.76 16 22 O -0.51 -11.64 12.54 -92.39 -1.16 -12.79 16 23 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 25 H 0.06 0.94 7.53 -2.39 -0.02 0.92 16 26 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 27 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 28 H 0.43 6.32 8.82 -92.71 -0.82 5.50 16 29 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 30 H 0.12 3.08 8.14 -2.38 -0.02 3.06 16 31 H 0.04 1.89 8.10 -2.39 -0.02 1.87 16 32 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 33 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 34 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 36 H 0.11 4.02 6.22 -2.91 -0.02 4.00 16 37 H 0.41 5.95 9.06 -74.06 -0.67 5.28 16 Total: -1.00 -76.50 318.53 2.52 -73.98 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -0.40 Total: 12.23 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: 3.43 Total: -25.39 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -1.33 Total: -72.74 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -1.20 Total: -35.32 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -76.50 2.52 -73.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594315409.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.858 kcal (2) G-P(sol) polarization free energy of solvation -76.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds