Wall clock time and date at job start Mon Mar 30 2020 07:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38109 * 120.00828 * 2 1 4 4 C 1.38697 * 120.01630 * 180.02562 * 3 2 1 5 5 O 1.35970 * 119.98848 * 179.97438 * 4 3 2 6 6 C 1.38742 * 120.03219 * 359.97158 * 4 3 2 7 7 C 1.38071 * 120.01215 * 0.02562 * 6 4 3 8 8 C 1.38829 * 120.00912 * 179.97438 * 2 1 3 9 9 N 1.40113 * 120.01171 * 359.74637 * 8 2 1 10 10 C 1.34777 * 119.99595 * 145.53987 * 9 8 2 11 11 O 1.21296 * 120.00342 * 4.51327 * 10 9 8 12 12 C 1.50696 * 119.99955 * 184.50688 * 10 9 8 13 13 C 1.53008 * 109.47214 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47166 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.47264 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99678 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00065 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00196 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00034 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47454 * 90.00072 * 19 17 15 21 21 H 1.48502 * 109.47470 * 210.00447 * 19 17 15 22 22 H 1.48508 * 109.47315 * 330.00445 * 19 17 15 23 23 H 1.09006 * 109.47119 * 270.02494 * 1 2 3 24 24 H 1.08992 * 109.47043 * 30.02785 * 1 2 3 25 25 H 1.08999 * 109.46707 * 150.02894 * 1 2 3 26 26 H 1.08004 * 119.99079 * 359.96812 * 3 2 1 27 27 H 0.96703 * 113.99730 * 89.99299 * 5 4 3 28 28 H 1.07993 * 119.99667 * 180.02562 * 6 4 3 29 29 H 1.08001 * 120.00821 * 180.02562 * 7 6 4 30 30 H 0.96994 * 120.00470 * 325.54703 * 9 8 2 31 31 H 1.08998 * 109.47192 * 300.00053 * 12 10 9 32 32 H 1.08996 * 109.47552 * 60.00185 * 12 10 9 33 33 H 1.08998 * 109.46550 * 299.99792 * 13 12 10 34 34 H 1.08991 * 109.47239 * 59.99831 * 13 12 10 35 35 H 1.09000 * 109.46883 * 299.99809 * 14 13 12 36 36 H 1.09008 * 109.47173 * 59.99428 * 14 13 12 37 37 H 0.96997 * 120.00496 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1960 0.0000 4 6 3.5847 1.1962 -0.0005 5 8 4.2641 2.3739 -0.0011 6 6 4.2792 -0.0049 -0.0005 7 6 3.5900 -1.2013 -0.0004 8 6 2.2013 -1.2022 0.0005 9 7 1.5012 -2.4158 0.0065 10 6 1.9957 -3.4822 -0.6531 11 8 3.0849 -3.4161 -1.1827 12 6 1.1953 -4.7566 -0.7324 13 6 1.9781 -5.8017 -1.5300 14 6 1.1653 -7.0953 -1.6110 15 6 1.9360 -8.1245 -2.3971 16 1 2.9085 -7.8803 -2.7984 17 6 1.4000 -9.3779 -2.6031 18 7 0.2160 -9.6754 -2.1141 19 14 2.3556 -10.6538 -3.5769 20 1 3.2101 -11.4432 -2.6538 21 1 1.4059 -11.5610 -4.2699 22 1 3.2108 -9.9716 -4.5813 23 1 -0.3634 0.0004 1.0277 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3633 -0.8903 -0.5134 26 1 1.6577 2.1313 -0.0005 27 1 4.4609 2.7148 0.8822 28 1 5.3592 -0.0041 -0.0005 29 1 4.1307 -2.1362 0.0000 30 1 0.6607 -2.4886 0.4851 31 1 1.0096 -5.1322 0.2738 32 1 0.2447 -4.5585 -1.2274 33 1 2.1641 -5.4262 -2.5362 34 1 2.9285 -5.9997 -1.0346 35 1 0.9789 -7.4709 -0.6049 36 1 0.2149 -6.8969 -2.1066 37 1 -0.1613 -10.5571 -2.2593 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594326468.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:59 Heat of formation + Delta-G solvation = -74.869313 kcal Electronic energy + Delta-G solvation = -18734.170294 eV Core-core repulsion = 15668.842994 eV Total energy + Delta-G solvation = -3065.327300 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.72578 -39.17709 -37.14632 -34.32548 -34.22993 -32.72318 -32.07985 -29.37094 -27.85523 -26.85552 -24.15542 -22.87377 -21.64131 -20.62456 -19.86739 -18.20067 -17.81589 -16.93682 -16.18085 -15.91345 -15.54457 -15.14178 -14.45331 -14.33120 -13.99688 -13.68421 -13.51281 -13.24100 -13.15971 -12.33258 -12.31040 -12.12066 -11.93338 -11.78677 -11.41308 -10.83032 -10.77090 -10.66361 -10.54972 -10.23305 -9.73873 -9.71163 -9.33124 -9.06628 -8.94008 -8.34034 -8.06132 -5.99688 -4.01241 1.00921 1.18259 2.70126 3.07051 3.33830 3.39780 3.44670 3.48497 4.03409 4.47809 4.60803 4.69015 4.91993 5.01187 5.16125 5.32572 5.35778 5.36583 5.46733 5.61050 5.62735 5.69023 5.87619 5.98735 6.13872 6.25334 6.27827 6.36670 6.66321 6.78330 6.87031 7.11193 7.37209 7.46468 7.67741 7.79838 8.00550 8.22848 8.44248 9.05791 9.62998 11.11832 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.043013 B = 0.003136 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.813265 B = 8927.037931 C = 9446.739041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.102 4.102 3 C -0.128 4.128 4 C 0.084 3.916 5 O -0.500 6.500 6 C -0.131 4.131 7 C -0.103 4.103 8 C 0.145 3.855 9 N -0.680 5.680 10 C 0.512 3.488 11 O -0.516 6.516 12 C -0.137 4.137 13 C -0.096 4.096 14 C 0.021 3.979 15 C -0.519 4.519 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.273 1.273 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.129 0.871 27 H 0.386 0.614 28 H 0.130 0.870 29 H 0.146 0.854 30 H 0.410 0.590 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.573 22.220 9.094 24.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.104 4.104 3 C -0.147 4.147 4 C 0.039 3.961 5 O -0.309 6.309 6 C -0.150 4.150 7 C -0.124 4.124 8 C 0.050 3.950 9 N -0.327 5.327 10 C 0.302 3.698 11 O -0.390 6.390 12 C -0.177 4.177 13 C -0.134 4.134 14 C -0.016 4.016 15 C -0.557 4.557 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.147 0.853 27 H 0.241 0.759 28 H 0.148 0.852 29 H 0.164 0.836 30 H 0.246 0.754 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.169 21.972 8.065 23.435 hybrid contribution 0.064 -0.663 0.215 0.700 sum 1.233 21.309 8.280 22.894 Atomic orbital electron populations 1.20749 0.90592 1.03406 1.02432 1.19557 0.96231 0.91335 1.03296 1.21036 0.93297 0.97631 1.02779 1.18401 0.89839 0.85144 1.02730 1.84867 1.76479 1.36275 1.33293 1.21334 1.00565 0.91380 1.01700 1.21277 0.92639 0.99176 0.99274 1.17700 0.91386 0.85117 1.00807 1.43832 1.26059 1.09574 1.53189 1.21548 0.87037 0.84955 0.76300 1.90678 1.20913 1.82768 1.44661 1.21885 1.00064 0.91931 1.03807 1.21475 0.98617 0.94841 0.98465 1.19129 0.95091 0.90295 0.97126 1.21263 1.03745 0.97116 1.33582 0.92556 1.25015 0.95007 0.98495 0.95973 1.69955 1.16497 1.21368 1.45924 0.86589 0.79751 0.81399 0.80261 1.20663 1.21246 1.19811 0.90958 0.91047 0.91261 0.85293 0.75928 0.85220 0.83604 0.75359 0.88938 0.88929 0.92567 0.92566 0.96561 0.96556 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 9.47 36.01 0.34 -0.53 16 2 C -0.10 -1.06 5.89 -104.45 -0.62 -1.68 16 3 C -0.13 -1.30 9.63 -39.46 -0.38 -1.68 16 4 C 0.08 0.91 6.70 -39.23 -0.26 0.65 16 5 O -0.50 -4.71 13.50 -19.65 -0.27 -4.97 16 6 C -0.13 -1.55 9.98 -39.46 -0.39 -1.94 16 7 C -0.10 -1.40 8.70 -39.41 -0.34 -1.74 16 8 C 0.14 1.81 6.29 -83.62 -0.53 1.29 16 9 N -0.68 -8.06 4.75 -9.83 -0.05 -8.11 16 10 C 0.51 7.89 7.68 -10.99 -0.08 7.80 16 11 O -0.52 -9.84 13.39 5.54 0.07 -9.77 16 12 C -0.14 -2.14 5.70 -27.88 -0.16 -2.29 16 13 C -0.10 -2.01 4.44 -26.73 -0.12 -2.13 16 14 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 16 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 19 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 23 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 25 H 0.07 0.53 7.17 -51.93 -0.37 0.16 16 26 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 27 H 0.39 1.65 9.06 45.56 0.41 2.06 16 28 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.15 2.20 6.18 -52.49 -0.32 1.88 16 30 H 0.41 3.49 7.85 -40.82 -0.32 3.17 16 31 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 34 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.02 0.43 8.14 -51.92 -0.42 0.00 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 317.25 15.07 4.78 4.78 Total: -1.00 -34.42 317.25 -7.20 -41.62 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -4.37 Total: 1.27 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -3.09 Total: -15.55 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.69 Total: -34.29 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.19 Total: -14.74 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.42 -7.20 -41.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594326468.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.249 kcal (2) G-P(sol) polarization free energy of solvation -34.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds