Wall clock time and date at job start Mon Mar 30 2020 07:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38109 * 120.00828 * 2 1 4 4 C 1.38697 * 120.01630 * 180.02562 * 3 2 1 5 5 O 1.35970 * 119.98848 * 179.97438 * 4 3 2 6 6 C 1.38742 * 120.03219 * 359.97158 * 4 3 2 7 7 C 1.38071 * 120.01215 * 0.02562 * 6 4 3 8 8 C 1.38829 * 120.00912 * 179.97438 * 2 1 3 9 9 N 1.40113 * 120.01171 * 359.74637 * 8 2 1 10 10 C 1.34777 * 119.99595 * 145.53987 * 9 8 2 11 11 O 1.21296 * 120.00342 * 4.51327 * 10 9 8 12 12 C 1.50696 * 119.99955 * 184.50688 * 10 9 8 13 13 C 1.53008 * 109.47214 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47166 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.47264 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99678 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00065 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00196 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00034 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47454 * 90.00072 * 19 17 15 21 21 H 1.48502 * 109.47470 * 210.00447 * 19 17 15 22 22 H 1.48508 * 109.47315 * 330.00445 * 19 17 15 23 23 H 1.09006 * 109.47119 * 270.02494 * 1 2 3 24 24 H 1.08992 * 109.47043 * 30.02785 * 1 2 3 25 25 H 1.08999 * 109.46707 * 150.02894 * 1 2 3 26 26 H 1.08004 * 119.99079 * 359.96812 * 3 2 1 27 27 H 0.96703 * 113.99730 * 89.99299 * 5 4 3 28 28 H 1.07993 * 119.99667 * 180.02562 * 6 4 3 29 29 H 1.08001 * 120.00821 * 180.02562 * 7 6 4 30 30 H 0.96994 * 120.00470 * 325.54703 * 9 8 2 31 31 H 1.08998 * 109.47192 * 300.00053 * 12 10 9 32 32 H 1.08996 * 109.47552 * 60.00185 * 12 10 9 33 33 H 1.08998 * 109.46550 * 299.99792 * 13 12 10 34 34 H 1.08991 * 109.47239 * 59.99831 * 13 12 10 35 35 H 1.09000 * 109.46883 * 299.99809 * 14 13 12 36 36 H 1.09008 * 109.47173 * 59.99428 * 14 13 12 37 37 H 0.96997 * 120.00496 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1960 0.0000 4 6 3.5847 1.1962 -0.0005 5 8 4.2641 2.3739 -0.0011 6 6 4.2792 -0.0049 -0.0005 7 6 3.5900 -1.2013 -0.0004 8 6 2.2013 -1.2022 0.0005 9 7 1.5012 -2.4158 0.0065 10 6 1.9957 -3.4822 -0.6531 11 8 3.0849 -3.4161 -1.1827 12 6 1.1953 -4.7566 -0.7324 13 6 1.9781 -5.8017 -1.5300 14 6 1.1653 -7.0953 -1.6110 15 6 1.9360 -8.1245 -2.3971 16 1 2.9085 -7.8803 -2.7984 17 6 1.4000 -9.3779 -2.6031 18 7 0.2160 -9.6754 -2.1141 19 14 2.3556 -10.6538 -3.5769 20 1 3.2101 -11.4432 -2.6538 21 1 1.4059 -11.5610 -4.2699 22 1 3.2108 -9.9716 -4.5813 23 1 -0.3634 0.0004 1.0277 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3633 -0.8903 -0.5134 26 1 1.6577 2.1313 -0.0005 27 1 4.4609 2.7148 0.8822 28 1 5.3592 -0.0041 -0.0005 29 1 4.1307 -2.1362 0.0000 30 1 0.6607 -2.4886 0.4851 31 1 1.0096 -5.1322 0.2738 32 1 0.2447 -4.5585 -1.2274 33 1 2.1641 -5.4262 -2.5362 34 1 2.9285 -5.9997 -1.0346 35 1 0.9789 -7.4709 -0.6049 36 1 0.2149 -6.8969 -2.1066 37 1 -0.1613 -10.5571 -2.2593 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594326468.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:58 Heat of formation + Delta-G solvation = -98.633255 kcal Electronic energy + Delta-G solvation = -18735.200776 eV Core-core repulsion = 15668.842994 eV Total energy + Delta-G solvation = -3066.357782 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.74127 -40.17141 -38.03137 -36.14602 -35.30652 -34.03983 -33.50950 -30.59158 -29.23203 -27.77029 -25.88642 -24.01419 -22.59841 -22.06532 -21.24277 -18.96993 -18.93659 -18.35469 -17.93891 -17.04347 -16.53295 -16.37306 -16.20539 -15.46162 -15.03290 -14.89781 -14.50695 -14.28944 -14.18881 -13.89042 -13.73121 -13.21743 -13.07008 -12.85703 -12.64973 -12.58812 -12.52198 -12.40894 -11.62267 -11.55539 -11.45423 -11.28586 -11.16608 -10.75938 -10.54313 -9.79482 -8.97521 -8.20741 -6.30376 0.12802 0.31845 1.39552 1.40230 1.51814 1.54054 2.03292 2.41524 2.63423 3.12508 3.29834 3.71602 3.87821 3.90892 4.17084 4.24735 4.25178 4.41111 4.51517 4.67745 4.79451 4.82492 4.93986 4.95796 5.08534 5.15661 5.19418 5.25021 5.36817 5.43689 5.45885 5.54287 5.75609 5.86787 5.90905 6.27122 6.40525 6.85238 6.87905 7.12365 7.38341 8.90744 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.043013 B = 0.003136 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.813265 B = 8927.037931 C = 9446.739041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.093 4.093 3 C -0.130 4.130 4 C 0.090 3.910 5 O -0.508 6.508 6 C -0.145 4.145 7 C -0.123 4.123 8 C 0.119 3.881 9 N -0.660 5.660 10 C 0.516 3.484 11 O -0.561 6.561 12 C -0.127 4.127 13 C -0.084 4.084 14 C 0.026 3.974 15 C -0.548 4.548 16 H 0.050 0.950 17 C 0.004 3.996 18 N -0.929 5.929 19 Si 0.960 3.040 20 H -0.272 1.272 21 H -0.278 1.278 22 H -0.269 1.269 23 H 0.094 0.906 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.155 0.845 27 H 0.409 0.591 28 H 0.135 0.865 29 H 0.121 0.879 30 H 0.428 0.572 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.040 0.960 34 H 0.042 0.958 35 H 0.003 0.997 36 H 0.002 0.998 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.294 23.715 9.503 25.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.095 4.095 3 C -0.149 4.149 4 C 0.045 3.955 5 O -0.321 6.321 6 C -0.164 4.164 7 C -0.144 4.144 8 C 0.025 3.975 9 N -0.306 5.306 10 C 0.305 3.695 11 O -0.438 6.438 12 C -0.166 4.166 13 C -0.122 4.122 14 C -0.011 4.011 15 C -0.586 4.586 16 H 0.069 0.931 17 C -0.194 4.194 18 N -0.569 5.569 19 Si 0.785 3.215 20 H -0.197 1.197 21 H -0.203 1.203 22 H -0.194 1.194 23 H 0.112 0.888 24 H 0.103 0.897 25 H 0.087 0.913 26 H 0.173 0.827 27 H 0.268 0.732 28 H 0.153 0.847 29 H 0.139 0.861 30 H 0.267 0.733 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.021 0.979 36 H 0.021 0.979 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.277 23.507 8.522 25.006 hybrid contribution 0.346 -1.009 0.131 1.075 sum 0.623 22.498 8.653 24.113 Atomic orbital electron populations 1.20852 0.88214 1.04088 1.04041 1.19873 0.97879 0.90410 1.01354 1.21349 0.93058 0.98565 1.01926 1.18487 0.90380 0.85164 1.01515 1.84802 1.76347 1.35427 1.35490 1.21430 1.01046 0.91493 1.02455 1.21189 0.93498 0.98813 1.00874 1.17855 0.91214 0.85837 1.02573 1.43490 1.26350 1.08641 1.52168 1.21366 0.86305 0.85564 0.76227 1.90676 1.22728 1.83542 1.46892 1.21700 0.99864 0.90730 1.04350 1.21179 0.98052 0.94452 0.98506 1.19014 0.94707 0.91794 0.95571 1.21700 1.04017 0.98534 1.34363 0.93143 1.25878 0.95994 1.00617 0.96914 1.70054 1.17829 1.22145 1.46870 0.85526 0.78501 0.78637 0.78877 1.19724 1.20303 1.19359 0.88761 0.89681 0.91297 0.82730 0.73163 0.84690 0.86145 0.73275 0.86645 0.86755 0.94144 0.93929 0.97858 0.97926 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 9.47 71.24 0.67 -0.68 16 2 C -0.09 -1.73 5.89 -19.75 -0.12 -1.84 16 3 C -0.13 -2.30 9.63 22.35 0.22 -2.08 16 4 C 0.09 1.81 6.70 22.50 0.15 1.96 16 5 O -0.51 -8.45 13.50 -93.21 -1.26 -9.71 16 6 C -0.15 -3.43 9.98 22.35 0.22 -3.21 16 7 C -0.12 -3.42 8.70 22.38 0.19 -3.23 16 8 C 0.12 2.90 6.29 38.11 0.24 3.14 16 9 N -0.66 -14.89 4.75 -303.39 -1.44 -16.33 16 10 C 0.52 15.81 7.68 87.66 0.67 16.49 16 11 O -0.56 -22.13 13.39 -3.08 -0.04 -22.17 16 12 C -0.13 -3.87 5.70 29.85 0.17 -3.70 16 13 C -0.08 -3.59 4.44 30.60 0.14 -3.45 16 14 C 0.03 1.36 4.97 29.85 0.15 1.51 16 15 C -0.55 -32.06 9.11 25.60 0.23 -31.83 16 16 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 17 C 0.00 0.23 5.46 84.65 0.46 0.69 16 18 N -0.93 -56.02 13.29 21.44 0.28 -55.74 16 19 Si 0.96 45.10 29.54 68.60 2.03 47.12 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 23 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 24 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 25 H 0.07 0.84 7.17 -2.39 -0.02 0.82 16 26 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 27 H 0.41 2.47 9.06 -74.06 -0.67 1.80 16 28 H 0.14 2.87 8.06 -2.91 -0.02 2.84 16 29 H 0.12 3.92 6.18 -2.91 -0.02 3.90 16 30 H 0.43 6.32 7.85 -92.71 -0.73 5.60 16 31 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 32 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 33 H 0.04 1.83 8.10 -2.39 -0.02 1.81 16 34 H 0.04 1.90 8.10 -2.39 -0.02 1.89 16 35 H 0.00 0.16 8.14 -2.39 -0.02 0.15 16 36 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 37 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -75.50 317.25 2.67 -72.83 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -0.31 Total: 10.21 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: 3.40 Total: -26.22 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -1.16 Total: -72.07 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -1.30 Total: -31.88 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -75.50 2.67 -72.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594326468.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.798 kcal (2) G-P(sol) polarization free energy of solvation -75.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds