Wall clock time and date at job start Mon Mar 30 2020 07:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38247 * 120.00738 * 2 1 4 4 C 1.38230 * 120.16283 * 180.25611 * 3 2 1 5 5 C 1.38285 * 120.18139 * 359.78919 * 4 3 2 6 6 C 1.38509 * 120.01610 * 359.95549 * 5 4 3 7 7 O 1.35970 * 120.08638 * 180.02562 * 6 5 4 8 8 C 1.38677 * 120.01243 * 179.76663 * 2 1 3 9 9 N 1.40126 * 120.08404 * 0.02562 * 8 2 1 10 10 C 1.34779 * 120.00097 * 268.73722 * 9 8 2 11 11 O 1.21293 * 119.99451 * 355.48751 * 10 9 8 12 12 C 1.50699 * 119.99854 * 175.48426 * 10 9 8 13 13 C 1.53002 * 109.46739 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46837 * 179.97438 * 13 12 10 15 15 C 1.50704 * 109.46875 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00251 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99875 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99966 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00022 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46860 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47103 * 120.00211 * 19 17 15 22 22 H 1.48502 * 109.47059 * 240.00194 * 19 17 15 23 23 H 1.08996 * 109.47204 * 270.23068 * 1 2 3 24 24 H 1.09002 * 109.46829 * 30.23355 * 1 2 3 25 25 H 1.08997 * 109.46634 * 150.23243 * 1 2 3 26 26 H 1.07996 * 119.91760 * 0.02562 * 3 2 1 27 27 H 1.08004 * 119.90718 * 179.76118 * 4 3 2 28 28 H 1.08003 * 119.99434 * 179.97438 * 5 4 3 29 29 H 0.96708 * 113.99980 * 269.97860 * 7 6 5 30 30 H 0.97001 * 119.99895 * 89.01679 * 9 8 2 31 31 H 1.09001 * 109.47174 * 300.00047 * 12 10 9 32 32 H 1.09004 * 109.47105 * 60.00420 * 12 10 9 33 33 H 1.08991 * 109.47426 * 299.99928 * 13 12 10 34 34 H 1.09004 * 109.46936 * 60.00369 * 13 12 10 35 35 H 1.09001 * 109.47213 * 300.00183 * 14 13 12 36 36 H 1.08993 * 109.47449 * 60.00398 * 14 13 12 37 37 H 0.97005 * 119.99845 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1972 0.0000 4 6 3.5807 1.2009 -0.0053 5 6 4.2792 0.0074 -0.0063 6 6 3.5940 -1.1963 -0.0010 7 8 4.2794 -2.3707 -0.0014 8 6 2.2007 -1.2008 0.0049 9 7 1.5021 -2.4155 0.0093 10 6 1.1880 -3.0080 1.1784 11 8 1.5802 -2.5334 2.2234 12 6 0.3494 -4.2601 1.1871 13 6 0.1414 -4.7245 2.6300 14 6 -0.7105 -5.9953 2.6390 15 6 -0.9159 -6.4524 4.0603 16 1 -0.4819 -5.8926 4.8756 17 6 -1.6571 -7.5857 4.3197 18 7 -2.1852 -8.2676 3.3268 19 14 -1.9111 -8.1526 6.0813 20 1 -1.2188 -7.2196 7.0063 21 1 -3.3633 -8.1707 6.3910 22 1 -1.3526 -9.5186 6.2472 23 1 -0.3633 0.0041 1.0276 24 1 -0.3633 0.8879 -0.5175 25 1 -0.3632 -0.8921 -0.5102 26 1 1.6572 2.1317 0.0004 27 1 4.1167 2.1386 -0.0092 28 1 5.3592 0.0139 -0.0109 29 1 4.4737 -2.7124 -0.8850 30 1 1.2481 -2.8320 -0.8291 31 1 -0.6176 -4.0530 0.7287 32 1 0.8585 -5.0423 0.6239 33 1 1.1084 -4.9317 3.0881 34 1 -0.3675 -3.9424 3.1936 35 1 -1.6776 -5.7877 2.1811 36 1 -0.2021 -6.7775 2.0754 37 1 -2.7063 -9.0651 3.5093 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594335885.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:01 Heat of formation + Delta-G solvation = -72.608956 kcal Electronic energy + Delta-G solvation = -19106.482611 eV Core-core repulsion = 16041.253328 eV Total energy + Delta-G solvation = -3065.229283 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.64964 -38.78075 -37.02213 -34.73549 -34.12006 -32.24298 -31.93867 -29.44635 -27.79036 -26.91490 -24.08804 -22.51603 -21.76311 -20.55874 -19.79669 -18.33035 -17.43440 -16.75601 -16.37589 -16.03750 -15.47310 -15.00145 -14.65237 -14.39480 -13.77106 -13.65667 -13.44689 -13.16862 -12.87946 -12.26088 -12.05053 -11.93805 -11.80449 -11.76443 -11.34160 -10.91620 -10.80078 -10.58405 -10.49630 -9.71442 -9.66118 -9.30292 -9.21774 -9.02750 -8.81490 -8.74964 -8.30368 -5.95944 -3.97012 0.99955 1.06776 2.92934 3.18065 3.35326 3.42489 3.45526 3.48947 3.96532 4.51336 4.63964 4.71387 5.03492 5.08252 5.16794 5.31207 5.40290 5.45034 5.51449 5.61288 5.72229 5.72741 5.95013 6.06228 6.17065 6.25934 6.30652 6.43916 6.74953 6.79571 6.95614 7.18684 7.49740 7.53275 7.73373 7.85793 8.05011 8.48406 8.50326 9.10304 9.66936 11.15614 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.036894 B = 0.003494 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.757487 B = 8011.870462 C = 8201.160783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.064 4.064 3 C -0.127 4.127 4 C -0.099 4.099 5 C -0.150 4.150 6 C 0.118 3.882 7 O -0.487 6.487 8 C 0.114 3.886 9 N -0.693 5.693 10 C 0.519 3.481 11 O -0.521 6.521 12 C -0.135 4.135 13 C -0.095 4.095 14 C 0.020 3.980 15 C -0.516 4.516 16 H 0.057 0.943 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.127 0.873 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.386 0.614 30 H 0.405 0.595 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.411 17.846 -14.200 24.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.066 4.066 3 C -0.145 4.145 4 C -0.117 4.117 5 C -0.169 4.169 6 C 0.072 3.928 7 O -0.297 6.297 8 C 0.022 3.978 9 N -0.346 5.346 10 C 0.308 3.692 11 O -0.394 6.394 12 C -0.175 4.175 13 C -0.133 4.133 14 C -0.017 4.017 15 C -0.555 4.555 16 H 0.075 0.925 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.094 0.906 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.145 0.855 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.242 0.758 30 H 0.241 0.759 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.528 18.061 -12.821 24.111 hybrid contribution -0.162 -0.690 -0.017 0.709 sum 9.366 17.371 -12.838 23.543 Atomic orbital electron populations 1.20755 0.90468 1.02796 1.03068 1.20113 0.96692 0.91963 0.97802 1.20963 0.94184 0.97247 1.02122 1.21035 0.94121 0.97673 0.98912 1.21329 1.00524 0.91602 1.03434 1.18746 0.89010 0.85785 0.99299 1.84921 1.75550 1.36327 1.32855 1.17760 0.89624 0.86239 1.04191 1.43481 1.59541 1.21934 1.09643 1.21383 0.79563 0.85697 0.82548 1.90703 1.52282 1.64841 1.31586 1.21839 0.99145 0.93470 1.03047 1.21457 1.01175 0.99696 0.91011 1.19135 0.94380 0.90973 0.97181 1.21319 1.31718 1.09585 0.92856 0.92520 1.25022 0.95804 0.96650 0.97077 1.69976 1.35282 1.17779 1.30749 0.86538 0.77792 0.78553 0.85173 1.19672 1.21047 1.21046 0.90613 0.91292 0.91205 0.85464 0.85438 0.85212 0.75807 0.75861 0.89229 0.89240 0.92644 0.92714 0.96587 0.96571 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.77 36.01 0.35 -0.80 16 2 C -0.06 -0.74 5.89 -104.45 -0.62 -1.36 16 3 C -0.13 -1.23 9.69 -39.58 -0.38 -1.62 16 4 C -0.10 -0.91 10.04 -39.57 -0.40 -1.31 16 5 C -0.15 -1.57 9.98 -39.46 -0.39 -1.96 16 6 C 0.12 1.47 6.72 -39.07 -0.26 1.21 16 7 O -0.49 -5.96 13.25 -19.64 -0.26 -6.22 16 8 C 0.11 1.48 5.28 -83.49 -0.44 1.03 16 9 N -0.69 -8.77 3.95 -9.75 -0.04 -8.81 16 10 C 0.52 8.80 7.79 -10.98 -0.09 8.72 16 11 O -0.52 -11.30 15.96 5.55 0.09 -11.21 16 12 C -0.14 -2.27 5.70 -27.88 -0.16 -2.43 16 13 C -0.10 -2.11 4.44 -26.73 -0.12 -2.23 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 15 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16 16 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 17 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 19 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 20 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 23 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 25 H 0.07 0.67 7.45 -51.93 -0.39 0.29 16 26 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 27 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 28 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 29 H 0.39 2.60 9.07 45.56 0.41 3.01 16 30 H 0.40 3.69 8.83 -40.82 -0.36 3.33 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.05 1.29 8.10 -51.93 -0.42 0.87 16 34 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 322.72 15.07 4.86 4.86 Total: -1.00 -36.61 322.72 -7.21 -43.81 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -4.52 Total: 1.17 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -3.06 Total: -14.30 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.70 Total: -35.35 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.17 Total: -17.43 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -36.61 -7.21 -43.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594335885.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.795 kcal (2) G-P(sol) polarization free energy of solvation -36.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds