Wall clock time and date at job start Mon Mar 30 2020 07:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38247 * 120.00738 * 2 1 4 4 C 1.38230 * 120.16283 * 180.25611 * 3 2 1 5 5 C 1.38285 * 120.18139 * 359.78919 * 4 3 2 6 6 C 1.38509 * 120.01610 * 359.95549 * 5 4 3 7 7 O 1.35970 * 120.08638 * 180.02562 * 6 5 4 8 8 C 1.38677 * 120.01243 * 179.76663 * 2 1 3 9 9 N 1.40126 * 120.08404 * 0.02562 * 8 2 1 10 10 C 1.34779 * 120.00097 * 268.73722 * 9 8 2 11 11 O 1.21293 * 119.99451 * 355.48751 * 10 9 8 12 12 C 1.50699 * 119.99854 * 175.48426 * 10 9 8 13 13 C 1.53002 * 109.46739 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46837 * 179.97438 * 13 12 10 15 15 C 1.50704 * 109.46875 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00251 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99875 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99966 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00022 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46860 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47103 * 120.00211 * 19 17 15 22 22 H 1.48502 * 109.47059 * 240.00194 * 19 17 15 23 23 H 1.08996 * 109.47204 * 270.23068 * 1 2 3 24 24 H 1.09002 * 109.46829 * 30.23355 * 1 2 3 25 25 H 1.08997 * 109.46634 * 150.23243 * 1 2 3 26 26 H 1.07996 * 119.91760 * 0.02562 * 3 2 1 27 27 H 1.08004 * 119.90718 * 179.76118 * 4 3 2 28 28 H 1.08003 * 119.99434 * 179.97438 * 5 4 3 29 29 H 0.96708 * 113.99980 * 269.97860 * 7 6 5 30 30 H 0.97001 * 119.99895 * 89.01679 * 9 8 2 31 31 H 1.09001 * 109.47174 * 300.00047 * 12 10 9 32 32 H 1.09004 * 109.47105 * 60.00420 * 12 10 9 33 33 H 1.08991 * 109.47426 * 299.99928 * 13 12 10 34 34 H 1.09004 * 109.46936 * 60.00369 * 13 12 10 35 35 H 1.09001 * 109.47213 * 300.00183 * 14 13 12 36 36 H 1.08993 * 109.47449 * 60.00398 * 14 13 12 37 37 H 0.97005 * 119.99845 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1972 0.0000 4 6 3.5807 1.2009 -0.0053 5 6 4.2792 0.0074 -0.0063 6 6 3.5940 -1.1963 -0.0010 7 8 4.2794 -2.3707 -0.0014 8 6 2.2007 -1.2008 0.0049 9 7 1.5021 -2.4155 0.0093 10 6 1.1880 -3.0080 1.1784 11 8 1.5802 -2.5334 2.2234 12 6 0.3494 -4.2601 1.1871 13 6 0.1414 -4.7245 2.6300 14 6 -0.7105 -5.9953 2.6390 15 6 -0.9159 -6.4524 4.0603 16 1 -0.4819 -5.8926 4.8756 17 6 -1.6571 -7.5857 4.3197 18 7 -2.1852 -8.2676 3.3268 19 14 -1.9111 -8.1526 6.0813 20 1 -1.2188 -7.2196 7.0063 21 1 -3.3633 -8.1707 6.3910 22 1 -1.3526 -9.5186 6.2472 23 1 -0.3633 0.0041 1.0276 24 1 -0.3633 0.8879 -0.5175 25 1 -0.3632 -0.8921 -0.5102 26 1 1.6572 2.1317 0.0004 27 1 4.1167 2.1386 -0.0092 28 1 5.3592 0.0139 -0.0109 29 1 4.4737 -2.7124 -0.8850 30 1 1.2481 -2.8320 -0.8291 31 1 -0.6176 -4.0530 0.7287 32 1 0.8585 -5.0423 0.6239 33 1 1.1084 -4.9317 3.0881 34 1 -0.3675 -3.9424 3.1936 35 1 -1.6776 -5.7877 2.1811 36 1 -0.2021 -6.7775 2.0754 37 1 -2.7063 -9.0651 3.5093 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594335885.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:00 Heat of formation + Delta-G solvation = -98.341470 kcal Electronic energy + Delta-G solvation = -19107.598457 eV Core-core repulsion = 16041.253328 eV Total energy + Delta-G solvation = -3066.345129 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.65438 -39.95907 -37.87376 -36.20721 -35.71826 -34.04059 -33.00184 -30.62077 -29.32074 -27.83358 -25.91157 -23.63655 -22.73591 -22.00049 -21.29717 -19.24241 -18.70416 -18.17732 -17.84378 -17.30492 -16.48873 -16.42356 -16.30956 -15.57534 -14.94892 -14.81088 -14.56014 -14.36637 -14.26114 -13.78260 -13.62561 -13.14257 -12.81301 -12.69372 -12.65171 -12.54653 -12.53029 -12.39762 -11.80742 -11.57808 -11.49039 -11.26993 -10.89733 -10.55083 -10.32621 -9.69858 -9.55545 -8.20915 -6.30643 0.17211 0.26985 1.38894 1.39226 1.53212 1.60457 2.13286 2.41618 2.65119 3.11994 3.18918 3.82279 3.87965 4.04044 4.18383 4.23757 4.35329 4.39962 4.53274 4.65061 4.70662 4.80109 4.89434 4.95020 5.08355 5.17626 5.18426 5.28902 5.40151 5.48941 5.53042 5.59870 5.74522 5.85989 5.94075 6.26947 6.43995 6.79883 6.84516 7.27624 7.37982 8.90768 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.036894 B = 0.003494 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.757487 B = 8011.870462 C = 8201.160783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.078 4.078 3 C -0.129 4.129 4 C -0.093 4.093 5 C -0.158 4.158 6 C 0.100 3.900 7 O -0.508 6.508 8 C 0.080 3.920 9 N -0.668 5.668 10 C 0.524 3.476 11 O -0.576 6.576 12 C -0.126 4.126 13 C -0.082 4.082 14 C 0.027 3.973 15 C -0.548 4.548 16 H 0.049 0.951 17 C 0.004 3.996 18 N -0.928 5.928 19 Si 0.962 3.038 20 H -0.270 1.270 21 H -0.274 1.274 22 H -0.275 1.275 23 H 0.056 0.944 24 H 0.095 0.905 25 H 0.070 0.930 26 H 0.154 0.846 27 H 0.161 0.839 28 H 0.146 0.854 29 H 0.406 0.594 30 H 0.422 0.578 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.036 0.964 34 H 0.039 0.961 35 H 0.004 0.996 36 H 0.002 0.998 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.679 19.087 -14.877 26.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.079 4.079 3 C -0.148 4.148 4 C -0.110 4.110 5 C -0.177 4.177 6 C 0.054 3.946 7 O -0.321 6.321 8 C -0.012 4.012 9 N -0.321 5.321 10 C 0.313 3.687 11 O -0.454 6.454 12 C -0.165 4.165 13 C -0.121 4.121 14 C -0.010 4.010 15 C -0.586 4.586 16 H 0.067 0.933 17 C -0.194 4.194 18 N -0.568 5.568 19 Si 0.786 3.214 20 H -0.194 1.194 21 H -0.199 1.199 22 H -0.200 1.200 23 H 0.075 0.925 24 H 0.113 0.887 25 H 0.089 0.911 26 H 0.172 0.828 27 H 0.178 0.822 28 H 0.164 0.836 29 H 0.265 0.735 30 H 0.262 0.738 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.022 0.978 36 H 0.020 0.980 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.799 19.304 -13.577 25.554 hybrid contribution -0.203 -1.029 0.117 1.055 sum 9.596 18.276 -13.460 24.643 Atomic orbital electron populations 1.20777 0.89811 1.04220 1.02185 1.20371 0.97437 0.92202 0.97931 1.21341 0.94723 0.97630 1.01059 1.21459 0.94148 0.98532 0.96902 1.21608 1.01526 0.91389 1.03139 1.19001 0.89084 0.86512 1.00025 1.84860 1.75567 1.36682 1.34942 1.18042 0.90164 0.86404 1.06546 1.43100 1.58105 1.21761 1.09084 1.21239 0.79089 0.85445 0.82913 1.90681 1.54657 1.66345 1.33680 1.21670 1.00937 0.94267 0.99670 1.21162 0.98984 0.97412 0.94498 1.19012 0.94215 0.92260 0.95522 1.21712 1.32403 1.10319 0.94148 0.93284 1.25893 0.95231 0.96574 1.01719 1.70069 1.35593 1.18212 1.32964 0.85452 0.78148 0.78201 0.79581 1.19397 1.19906 1.20017 0.92524 0.88668 0.91116 0.82806 0.82185 0.83599 0.73541 0.73826 0.86779 0.87161 0.94523 0.94174 0.97763 0.97960 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.14 9.77 71.24 0.70 -1.45 16 2 C -0.08 -1.70 5.89 -19.76 -0.12 -1.82 16 3 C -0.13 -2.21 9.69 22.27 0.22 -1.99 16 4 C -0.09 -1.45 10.04 22.28 0.22 -1.23 16 5 C -0.16 -3.04 9.98 22.35 0.22 -2.82 16 6 C 0.10 2.42 6.72 22.60 0.15 2.58 16 7 O -0.51 -12.23 13.25 -93.21 -1.23 -13.46 16 8 C 0.08 2.02 5.28 38.18 0.20 2.22 16 9 N -0.67 -16.47 3.95 -303.13 -1.20 -17.66 16 10 C 0.52 17.78 7.79 87.66 0.68 18.46 16 11 O -0.58 -25.62 15.96 -3.07 -0.05 -25.67 16 12 C -0.13 -4.18 5.70 29.85 0.17 -4.01 16 13 C -0.08 -3.75 4.44 30.59 0.14 -3.61 16 14 C 0.03 1.45 4.97 29.85 0.15 1.60 16 15 C -0.55 -32.79 9.11 25.60 0.23 -32.56 16 16 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 17 C 0.00 0.22 5.46 84.65 0.46 0.69 16 18 N -0.93 -56.63 13.29 21.45 0.28 -56.34 16 19 Si 0.96 45.77 29.54 68.60 2.03 47.79 16 20 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 22 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 23 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.09 1.24 8.09 -2.39 -0.02 1.22 16 25 H 0.07 1.28 7.45 -2.39 -0.02 1.26 16 26 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 27 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 28 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 29 H 0.41 5.21 9.07 -74.05 -0.67 4.54 16 30 H 0.42 7.12 8.83 -92.71 -0.82 6.31 16 31 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 32 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 34 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 35 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -80.26 322.72 2.85 -77.41 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -0.41 Total: 11.86 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: 3.43 Total: -23.93 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -0.91 Total: -74.00 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -1.28 Total: -39.13 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -80.26 2.85 -77.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594335885.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.935 kcal (2) G-P(sol) polarization free energy of solvation -80.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds