Wall clock time and date at job start Mon Mar 30 2020 07:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38272 * 119.92088 * 2 1 4 4 C 1.38240 * 120.18403 * 180.27230 * 3 2 1 5 5 C 1.38560 * 120.01037 * 359.49406 * 4 3 2 6 6 O 1.35972 * 120.08387 * 180.27491 * 5 4 3 7 7 C 1.39298 * 119.83544 * 0.24768 * 5 4 3 8 8 N 1.40123 * 120.08903 * 180.02562 * 7 5 4 9 9 C 1.34773 * 119.99784 * 145.34862 * 8 7 5 10 10 O 1.21296 * 120.00373 * 4.45560 * 9 8 7 11 11 C 1.50706 * 119.99652 * 184.45169 * 9 8 7 12 12 C 1.52998 * 109.46769 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47176 * 180.02562 * 12 11 9 14 14 C 1.50698 * 109.47244 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00332 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99782 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00197 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99737 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46998 * 90.00138 * 18 16 14 20 20 H 1.48507 * 109.46815 * 209.99930 * 18 16 14 21 21 H 1.48500 * 109.47012 * 329.99967 * 18 16 14 22 22 C 1.38198 * 119.91639 * 179.76388 * 2 1 3 23 23 H 1.08995 * 109.47487 * 270.23503 * 1 2 3 24 24 H 1.08999 * 109.46782 * 30.24022 * 1 2 3 25 25 H 1.09005 * 109.47047 * 150.23021 * 1 2 3 26 26 H 1.08004 * 119.91191 * 0.04375 * 3 2 1 27 27 H 1.07995 * 119.99685 * 179.76769 * 4 3 2 28 28 H 0.96698 * 114.00167 * 89.99587 * 6 5 4 29 29 H 0.96998 * 119.99767 * 325.35287 * 8 7 5 30 30 H 1.08997 * 109.47287 * 300.00041 * 11 9 8 31 31 H 1.08993 * 109.46769 * 60.00437 * 11 9 8 32 32 H 1.09004 * 109.47491 * 300.00279 * 12 11 9 33 33 H 1.08998 * 109.47415 * 59.99995 * 12 11 9 34 34 H 1.08997 * 109.46970 * 299.99758 * 13 12 11 35 35 H 1.08998 * 109.47066 * 59.99642 * 13 12 11 36 36 H 0.96999 * 119.99918 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.00916 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1984 0.0000 4 6 3.5791 1.2048 -0.0057 5 6 4.2776 0.0082 -0.0008 6 8 5.6374 0.0127 -0.0007 7 6 3.5835 -1.1995 0.0046 8 7 4.2846 -2.4127 0.0101 9 6 3.7903 -3.4736 0.6785 10 8 2.7010 -3.4034 1.2074 11 6 4.5911 -4.7471 0.7687 12 6 3.8085 -5.7855 1.5749 13 6 4.6217 -7.0782 1.6671 14 6 3.8506 -8.1013 2.4606 15 1 2.8779 -7.8541 2.8597 16 6 4.3872 -9.3526 2.6781 17 7 5.5719 -9.6535 2.1925 18 14 3.4316 -10.6205 3.6624 19 1 2.5785 -11.4185 2.7455 20 1 4.3816 -11.5210 4.3639 21 1 2.5754 -9.9300 4.6600 22 6 2.1963 -1.1978 0.0049 23 1 -0.3634 0.0042 1.0276 24 1 -0.3633 0.8878 -0.5176 25 1 -0.3633 -0.8921 -0.5103 26 1 1.6540 2.1322 0.0007 27 1 4.1147 2.1425 -0.0095 28 1 6.0306 0.0176 0.8827 29 1 5.1256 -2.4890 -0.4671 30 1 4.7771 -5.1311 -0.2342 31 1 5.5415 -4.5443 1.2623 32 1 3.6220 -5.4017 2.5780 33 1 2.8582 -5.9881 1.0810 34 1 4.8084 -7.4623 0.6643 35 1 5.5718 -6.8753 2.1612 36 1 5.9496 -10.5337 2.3458 37 1 1.6550 -2.1324 0.0084 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594336322.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:03 Heat of formation + Delta-G solvation = -76.685659 kcal Electronic energy + Delta-G solvation = -18833.211285 eV Core-core repulsion = 15767.805222 eV Total energy + Delta-G solvation = -3065.406062 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.74704 -38.99713 -37.06915 -34.88167 -34.22296 -32.12894 -31.79051 -30.04026 -27.74167 -26.48580 -24.25844 -22.93113 -21.60336 -20.54117 -19.85010 -18.67424 -17.23963 -16.78668 -16.15655 -16.00546 -15.59182 -15.17201 -14.44140 -14.35547 -14.07080 -13.68903 -13.58627 -13.39975 -12.81069 -12.30885 -12.05903 -11.97120 -11.86297 -11.74498 -11.40768 -11.03707 -10.82877 -10.66085 -10.55198 -10.32056 -9.71338 -9.70589 -9.31944 -9.05546 -8.73169 -8.33830 -8.14095 -5.99393 -4.01030 1.01231 1.19663 2.71958 3.07237 3.33811 3.39716 3.44386 3.47206 4.04115 4.47791 4.68059 4.70712 4.96822 5.11731 5.16093 5.35482 5.36779 5.48286 5.52581 5.62589 5.62808 5.76768 5.87768 6.02805 6.13294 6.20396 6.32659 6.49930 6.66479 6.77348 6.87050 7.11211 7.39441 7.43733 7.68086 7.80268 8.00798 8.23662 8.44388 9.05979 9.63115 11.12092 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.033858 B = 0.003382 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.785432 B = 8278.128705 C = 8968.114060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.076 4.076 3 C -0.127 4.127 4 C -0.124 4.124 5 C 0.065 3.935 6 O -0.496 6.496 7 C 0.135 3.865 8 N -0.678 5.678 9 C 0.512 3.488 10 O -0.518 6.518 11 C -0.137 4.137 12 C -0.095 4.095 13 C 0.020 3.980 14 C -0.519 4.519 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.273 1.273 22 C -0.112 4.112 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.125 0.875 27 H 0.130 0.870 28 H 0.387 0.613 29 H 0.414 0.586 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.998 22.256 -5.940 23.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.077 4.077 3 C -0.146 4.146 4 C -0.143 4.143 5 C 0.018 3.982 6 O -0.305 6.305 7 C 0.039 3.961 8 N -0.324 5.324 9 C 0.301 3.699 10 O -0.392 6.392 11 C -0.177 4.177 12 C -0.133 4.133 13 C -0.017 4.017 14 C -0.557 4.557 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.132 4.132 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.143 0.857 27 H 0.148 0.852 28 H 0.243 0.757 29 H 0.251 0.749 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.035 0.965 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.689 22.066 -6.143 23.201 hybrid contribution 0.253 -0.753 0.790 1.121 sum -3.436 21.313 -5.352 22.242 Atomic orbital electron populations 1.20782 0.90797 1.02777 1.02606 1.19872 0.96418 0.92493 0.98902 1.20864 0.93433 0.97678 1.02628 1.21165 0.94402 0.97083 1.01611 1.18183 0.82979 0.91047 1.05992 1.84818 1.15755 1.96355 1.33600 1.18188 0.91732 0.85219 1.00926 1.43747 1.26195 1.09552 1.52873 1.21568 0.87029 0.84968 0.76302 1.90672 1.20878 1.82608 1.45047 1.21882 1.00031 0.91927 1.03820 1.21471 0.98621 0.94924 0.98327 1.19130 0.95085 0.90307 0.97153 1.21259 1.03696 0.97401 1.33360 0.92565 1.25022 0.95004 0.98470 0.96006 1.69960 1.16444 1.21403 1.45891 0.86587 0.79745 0.81368 0.80287 1.20656 1.21250 1.19825 1.21212 0.92109 0.99310 1.00553 0.90921 0.91527 0.91308 0.85709 0.85241 0.75720 0.74924 0.88925 0.88938 0.92606 0.92575 0.96541 0.96551 0.93034 0.83677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.01 36.01 0.36 -0.64 16 2 C -0.08 -0.86 5.88 -104.62 -0.62 -1.47 16 3 C -0.13 -1.24 9.69 -39.57 -0.38 -1.63 16 4 C -0.12 -1.24 9.98 -39.46 -0.39 -1.63 16 5 C 0.06 0.74 6.72 -39.07 -0.26 0.48 16 6 O -0.50 -4.81 13.06 -19.65 -0.26 -5.07 16 7 C 0.13 1.78 6.32 -83.49 -0.53 1.25 16 8 N -0.68 -8.64 5.19 -9.74 -0.05 -8.69 16 9 C 0.51 8.07 7.68 -10.98 -0.08 7.98 16 10 O -0.52 -9.87 13.40 5.54 0.07 -9.80 16 11 C -0.14 -2.18 5.70 -27.88 -0.16 -2.34 16 12 C -0.10 -2.01 4.44 -26.73 -0.12 -2.13 16 13 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 14 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 18 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.11 -1.52 8.35 -39.42 -0.33 -1.85 16 23 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 25 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 26 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 27 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.39 2.30 9.06 45.56 0.41 2.72 16 29 H 0.41 4.26 8.57 -40.82 -0.35 3.91 16 30 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 33 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.15 2.23 6.20 -52.49 -0.33 1.90 16 LS Contribution 319.19 15.07 4.81 4.81 Total: -1.00 -33.64 319.19 -7.21 -40.85 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -4.44 Total: 2.56 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -3.06 Total: -15.32 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.69 Total: -34.93 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.18 Total: -14.87 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.64 -7.21 -40.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594336322.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.836 kcal (2) G-P(sol) polarization free energy of solvation -33.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds