Wall clock time and date at job start Mon Mar 30 2020 07:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38272 * 119.92088 * 2 1 4 4 C 1.38240 * 120.18403 * 180.27230 * 3 2 1 5 5 C 1.38560 * 120.01037 * 359.49406 * 4 3 2 6 6 O 1.35972 * 120.08387 * 180.27491 * 5 4 3 7 7 C 1.39298 * 119.83544 * 0.24768 * 5 4 3 8 8 N 1.40123 * 120.08903 * 180.02562 * 7 5 4 9 9 C 1.34773 * 119.99784 * 145.34862 * 8 7 5 10 10 O 1.21296 * 120.00373 * 4.45560 * 9 8 7 11 11 C 1.50706 * 119.99652 * 184.45169 * 9 8 7 12 12 C 1.52998 * 109.46769 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47176 * 180.02562 * 12 11 9 14 14 C 1.50698 * 109.47244 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00332 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99782 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00197 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99737 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46998 * 90.00138 * 18 16 14 20 20 H 1.48507 * 109.46815 * 209.99930 * 18 16 14 21 21 H 1.48500 * 109.47012 * 329.99967 * 18 16 14 22 22 C 1.38198 * 119.91639 * 179.76388 * 2 1 3 23 23 H 1.08995 * 109.47487 * 270.23503 * 1 2 3 24 24 H 1.08999 * 109.46782 * 30.24022 * 1 2 3 25 25 H 1.09005 * 109.47047 * 150.23021 * 1 2 3 26 26 H 1.08004 * 119.91191 * 0.04375 * 3 2 1 27 27 H 1.07995 * 119.99685 * 179.76769 * 4 3 2 28 28 H 0.96698 * 114.00167 * 89.99587 * 6 5 4 29 29 H 0.96998 * 119.99767 * 325.35287 * 8 7 5 30 30 H 1.08997 * 109.47287 * 300.00041 * 11 9 8 31 31 H 1.08993 * 109.46769 * 60.00437 * 11 9 8 32 32 H 1.09004 * 109.47491 * 300.00279 * 12 11 9 33 33 H 1.08998 * 109.47415 * 59.99995 * 12 11 9 34 34 H 1.08997 * 109.46970 * 299.99758 * 13 12 11 35 35 H 1.08998 * 109.47066 * 59.99642 * 13 12 11 36 36 H 0.96999 * 119.99918 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.00916 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1984 0.0000 4 6 3.5791 1.2048 -0.0057 5 6 4.2776 0.0082 -0.0008 6 8 5.6374 0.0127 -0.0007 7 6 3.5835 -1.1995 0.0046 8 7 4.2846 -2.4127 0.0101 9 6 3.7903 -3.4736 0.6785 10 8 2.7010 -3.4034 1.2074 11 6 4.5911 -4.7471 0.7687 12 6 3.8085 -5.7855 1.5749 13 6 4.6217 -7.0782 1.6671 14 6 3.8506 -8.1013 2.4606 15 1 2.8779 -7.8541 2.8597 16 6 4.3872 -9.3526 2.6781 17 7 5.5719 -9.6535 2.1925 18 14 3.4316 -10.6205 3.6624 19 1 2.5785 -11.4185 2.7455 20 1 4.3816 -11.5210 4.3639 21 1 2.5754 -9.9300 4.6600 22 6 2.1963 -1.1978 0.0049 23 1 -0.3634 0.0042 1.0276 24 1 -0.3633 0.8878 -0.5176 25 1 -0.3633 -0.8921 -0.5103 26 1 1.6540 2.1322 0.0007 27 1 4.1147 2.1425 -0.0095 28 1 6.0306 0.0176 0.8827 29 1 5.1256 -2.4890 -0.4671 30 1 4.7771 -5.1311 -0.2342 31 1 5.5415 -4.5443 1.2623 32 1 3.6220 -5.4017 2.5780 33 1 2.8582 -5.9881 1.0810 34 1 4.8084 -7.4623 0.6643 35 1 5.5718 -6.8753 2.1612 36 1 5.9496 -10.5337 2.3458 37 1 1.6550 -2.1324 0.0084 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594336322.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:02 Heat of formation + Delta-G solvation = -99.764051 kcal Electronic energy + Delta-G solvation = -18834.212039 eV Core-core repulsion = 15767.805222 eV Total energy + Delta-G solvation = -3066.406817 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.77331 -40.06022 -37.84960 -36.27759 -35.81628 -34.07772 -32.56526 -31.19451 -29.40998 -27.29441 -25.99899 -24.08672 -22.64669 -21.97339 -21.24766 -19.52085 -18.64935 -17.98108 -17.86786 -17.03071 -16.59283 -16.52443 -16.20883 -15.38166 -15.13913 -14.88868 -14.64070 -14.41968 -14.27405 -13.78976 -13.57063 -13.22234 -12.86474 -12.74505 -12.62771 -12.55687 -12.49311 -12.42774 -11.87979 -11.58455 -11.47896 -11.32675 -11.22945 -10.71702 -10.54963 -9.61281 -9.05629 -8.21027 -6.30998 0.15405 0.31780 1.39439 1.40384 1.51894 1.53061 1.99223 2.41269 2.63314 3.12151 3.26210 3.68916 3.92916 3.99717 4.14252 4.22246 4.34334 4.38246 4.51029 4.72387 4.79404 4.83417 4.91422 4.93237 5.06757 5.17309 5.18887 5.21653 5.29064 5.44187 5.53103 5.65085 5.73904 5.85767 5.92931 6.25876 6.36403 6.76205 6.84561 7.08773 7.37766 8.90498 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.033858 B = 0.003382 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.785432 B = 8278.128705 C = 8968.114060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.086 4.086 3 C -0.119 4.119 4 C -0.123 4.123 5 C 0.068 3.932 6 O -0.499 6.499 7 C 0.106 3.894 8 N -0.660 5.660 9 C 0.516 3.484 10 O -0.558 6.558 11 C -0.127 4.127 12 C -0.082 4.082 13 C 0.026 3.974 14 C -0.548 4.548 15 H 0.052 0.948 16 C 0.003 3.997 17 N -0.929 5.929 18 Si 0.962 3.038 19 H -0.272 1.272 20 H -0.278 1.278 21 H -0.268 1.268 22 C -0.136 4.136 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.060 0.940 26 H 0.157 0.843 27 H 0.157 0.843 28 H 0.405 0.595 29 H 0.426 0.574 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.001 0.999 35 H 0.002 0.998 36 H 0.265 0.735 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.972 24.077 -6.017 24.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.141 4.141 5 C 0.021 3.979 6 O -0.311 6.311 7 C 0.011 3.989 8 N -0.307 5.307 9 C 0.306 3.694 10 O -0.435 6.435 11 C -0.167 4.167 12 C -0.120 4.120 13 C -0.012 4.012 14 C -0.586 4.586 15 H 0.070 0.930 16 C -0.195 4.195 17 N -0.569 5.569 18 Si 0.786 3.214 19 H -0.197 1.197 20 H -0.203 1.203 21 H -0.192 1.192 22 C -0.156 4.156 23 H 0.093 0.907 24 H 0.110 0.890 25 H 0.079 0.921 26 H 0.175 0.825 27 H 0.175 0.825 28 H 0.263 0.737 29 H 0.265 0.735 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.073 0.927 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.633 23.918 -6.236 24.983 hybrid contribution 0.278 -1.230 0.786 1.486 sum -3.355 22.689 -5.450 23.574 Atomic orbital electron populations 1.20826 0.89452 1.03622 1.02992 1.20159 0.97615 0.92295 0.98634 1.21246 0.93635 0.98213 1.00633 1.21528 0.94685 0.97575 1.00360 1.18269 0.83637 0.90743 1.05263 1.84774 1.14868 1.96255 1.35206 1.18404 0.91858 0.85712 1.02924 1.43439 1.26339 1.08964 1.51941 1.21352 0.86344 0.85446 0.76262 1.90668 1.22474 1.83316 1.47067 1.21697 0.99905 0.90900 1.04168 1.21171 0.97995 0.94392 0.98472 1.19018 0.94736 0.91860 0.95543 1.21691 1.03998 0.98763 1.34132 0.93015 1.25907 0.95997 1.00604 0.96988 1.70064 1.17834 1.22181 1.46868 0.85501 0.78468 0.78571 0.78849 1.19733 1.20335 1.19233 1.21170 0.92662 0.99321 1.02491 0.90709 0.89042 0.92114 0.82520 0.82518 0.73673 0.73480 0.87012 0.86863 0.93921 0.93889 0.98013 0.97954 0.92652 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 10.01 71.24 0.71 -1.17 16 2 C -0.09 -1.86 5.88 -19.87 -0.12 -1.97 16 3 C -0.12 -1.99 9.69 22.28 0.22 -1.77 16 4 C -0.12 -2.09 9.98 22.35 0.22 -1.86 16 5 C 0.07 1.41 6.72 22.60 0.15 1.56 16 6 O -0.50 -8.48 13.06 -93.23 -1.22 -9.70 16 7 C 0.11 2.74 6.32 38.19 0.24 2.98 16 8 N -0.66 -16.56 5.19 -303.13 -1.57 -18.13 16 9 C 0.52 16.43 7.68 87.66 0.67 17.10 16 10 O -0.56 -22.09 13.40 -3.08 -0.04 -22.13 16 11 C -0.13 -4.04 5.70 29.85 0.17 -3.87 16 12 C -0.08 -3.56 4.44 30.59 0.14 -3.42 16 13 C 0.03 1.34 4.97 29.85 0.15 1.49 16 14 C -0.55 -32.12 9.11 25.60 0.23 -31.89 16 15 H 0.05 3.00 7.74 -2.91 -0.02 2.97 16 16 C 0.00 0.18 5.46 84.65 0.46 0.64 16 17 N -0.93 -56.35 13.29 21.45 0.28 -56.06 16 18 Si 0.96 45.11 29.54 68.60 2.03 47.13 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 22 C -0.14 -3.78 8.35 22.38 0.19 -3.59 16 23 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.09 1.04 8.09 -2.39 -0.02 1.02 16 25 H 0.06 1.09 8.08 -2.38 -0.02 1.07 16 26 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 27 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 28 H 0.41 3.79 9.06 -74.06 -0.67 3.12 16 29 H 0.43 8.26 8.57 -92.71 -0.79 7.46 16 30 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 31 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 32 H 0.04 1.93 8.10 -2.38 -0.02 1.91 16 33 H 0.04 1.94 8.10 -2.39 -0.02 1.92 16 34 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 36 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 37 H 0.12 3.88 6.20 -2.91 -0.02 3.86 16 Total: -1.00 -73.69 319.19 2.54 -71.16 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -0.38 Total: 13.51 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: 3.44 Total: -25.77 kcal Atomic # 7 Polarization: -72.90 SS G_CDS: -1.29 Total: -74.19 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -1.26 Total: -31.83 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -73.69 2.54 -71.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594336322.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.609 kcal (2) G-P(sol) polarization free energy of solvation -73.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds