Wall clock time and date at job start Mon Mar 30 2020 06:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30080 * 125.43649 * 2 1 4 4 C 1.35787 * 108.53365 * 180.15062 * 3 2 1 5 5 C 1.48305 * 126.37859 * 179.85814 * 4 3 2 6 6 N 1.30835 * 126.42168 * 179.68449 * 5 4 3 7 7 O 1.21285 * 110.08625 * 179.70893 * 6 5 4 8 8 C 1.33681 * 110.03693 * 0.47156 * 7 6 5 9 9 C 1.50696 * 126.42804 * 179.79834 * 8 7 6 10 10 C 1.52997 * 109.47055 * 269.69091 * 9 8 7 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47418 * 89.99710 * 16 14 12 18 18 H 1.48498 * 109.47091 * 209.99770 * 16 14 12 19 19 H 1.48508 * 109.47394 * 329.99535 * 16 14 12 20 20 N 1.30970 * 107.13790 * 359.53560 * 8 7 6 21 21 C 1.35595 * 107.23517 * 359.59761 * 4 3 2 22 22 O 1.33981 * 125.43598 * 179.70354 * 2 1 3 23 23 H 1.09000 * 109.46924 * 180.27049 * 1 2 3 24 24 H 1.08997 * 109.47140 * 300.26797 * 1 2 3 25 25 H 1.09000 * 109.47148 * 60.27031 * 1 2 3 26 26 H 1.08996 * 109.47197 * 149.69293 * 9 8 7 27 27 H 1.09001 * 109.47328 * 29.68820 * 9 8 7 28 28 H 1.09001 * 109.47502 * 60.00512 * 10 9 8 29 29 H 1.09001 * 109.47289 * 300.00308 * 10 9 8 30 30 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 31 31 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 32 32 H 0.96996 * 120.00505 * 179.97438 * 15 14 12 33 33 H 1.07999 * 126.50323 * 180.21615 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2612 1.0598 0.0000 4 6 3.5604 0.6650 -0.0034 5 6 4.7492 1.5517 -0.0075 6 7 6.0013 1.1723 -0.0050 7 8 6.7303 2.1416 -0.0156 8 6 6.0019 3.2625 -0.0158 9 6 6.5310 4.6735 -0.0229 10 6 6.7095 5.1584 1.4172 11 6 7.2462 6.5913 1.4100 12 6 7.4226 7.0687 2.8285 13 1 7.1762 6.4156 3.6526 14 6 7.8976 8.3396 3.0740 15 7 8.1971 9.1350 2.0705 16 14 8.1156 8.9316 4.8323 17 1 9.4846 8.5978 5.3009 18 1 7.9184 10.4024 4.8874 19 1 7.1170 8.2652 5.7065 20 7 4.7422 2.9042 -0.0145 21 6 3.5683 -0.6909 0.0036 22 8 2.2838 -1.0916 0.0056 23 1 -0.3633 -1.0277 0.0049 24 1 -0.3633 0.5180 0.8875 25 1 -0.3633 0.5096 -0.8924 26 1 5.8255 5.3235 -0.5403 27 1 7.4921 4.6986 -0.5364 28 1 7.4152 4.5085 1.9347 29 1 5.7485 5.1333 1.9308 30 1 8.2072 6.6167 0.8964 31 1 6.5403 7.2410 0.8927 32 1 8.5309 10.0291 2.2432 33 1 4.4401 -1.3283 0.0066 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594531775.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:32 Heat of formation + Delta-G solvation = 73.970878 kcal Electronic energy + Delta-G solvation = -18261.992300 eV Core-core repulsion = 15099.578852 eV Total energy + Delta-G solvation = -3162.413448 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.45386 -43.65183 -36.22473 -35.47259 -34.63598 -33.19105 -32.32898 -31.20280 -28.27499 -27.63197 -25.02778 -24.27208 -22.84411 -21.95767 -20.78898 -20.26830 -18.14625 -17.95517 -17.08388 -16.96455 -16.29482 -15.66089 -14.80834 -14.45788 -14.30508 -14.22082 -13.57463 -13.51532 -12.95361 -12.62031 -12.57277 -12.46717 -12.08735 -11.48727 -11.23246 -11.01659 -10.88968 -10.87797 -10.83329 -10.58573 -10.08072 -9.82811 -9.44281 -9.15172 -8.98212 -8.37374 -6.02682 -4.05052 0.71393 1.30681 1.88818 2.29341 2.88419 2.91396 3.10411 3.31978 3.38401 3.42186 3.67048 4.16828 4.44868 4.57006 4.87116 4.97063 5.01018 5.18986 5.33643 5.34824 5.40501 5.53676 5.58537 5.64358 5.82762 6.03289 6.10673 6.49544 6.64056 6.95533 7.30439 7.61343 7.73043 7.95927 8.18294 8.37518 9.01146 9.59365 11.08651 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.031553 B = 0.003202 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.169048 B = 8741.658482 C = 9173.063875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.197 3.803 3 N -0.449 5.449 4 C 0.061 3.939 5 C 0.242 3.758 6 N -0.382 5.382 7 O 0.081 5.919 8 C 0.210 3.790 9 C -0.033 4.033 10 C -0.107 4.107 11 C 0.023 3.977 12 C -0.522 4.522 13 H 0.055 0.945 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 N -0.464 5.464 21 C -0.021 4.021 22 O -0.197 6.197 23 H 0.090 0.910 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.110 0.890 27 H 0.102 0.898 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.021 0.979 31 H 0.021 0.979 32 H 0.261 0.739 33 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.225 -19.467 -6.473 23.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.012 4.012 3 N -0.178 5.178 4 C -0.059 4.059 5 C -0.028 4.028 6 N -0.091 5.091 7 O 0.021 5.979 8 C -0.010 4.010 9 C -0.072 4.072 10 C -0.146 4.146 11 C -0.014 4.014 12 C -0.560 4.560 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.720 3.280 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.199 1.199 20 N -0.196 5.196 21 C -0.096 4.096 22 O -0.084 6.084 23 H 0.109 0.891 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.128 0.872 27 H 0.120 0.880 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -11.628 -19.460 -6.511 23.586 hybrid contribution 0.672 -0.116 0.976 1.191 sum -10.956 -19.576 -5.535 23.106 Atomic orbital electron populations 1.20314 0.80600 1.04890 1.05562 1.26454 0.96787 0.78052 0.99884 1.70733 1.00149 1.29510 1.17429 1.18236 0.88843 0.89382 1.09419 1.22293 0.89892 0.88275 1.02386 1.74834 1.02432 1.09832 1.21990 1.85279 1.35183 1.11762 1.65716 1.29437 0.84823 0.93894 0.92806 1.20712 1.02554 0.81128 1.02827 1.21756 1.01568 1.00776 0.90504 1.19104 0.96409 0.88347 0.97539 1.21201 1.43527 0.98927 0.92380 0.92626 1.25000 0.95464 0.96817 0.97072 1.69948 1.44725 1.08192 1.30534 0.86587 0.78499 0.77886 0.85005 1.20643 1.21195 1.19868 1.72175 1.18654 1.08453 1.20349 1.24992 0.85142 0.95146 1.04317 1.84448 1.16376 1.37796 1.69757 0.89119 0.88113 0.88163 0.87216 0.88007 0.92476 0.92270 0.96034 0.96015 0.92923 0.75659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.31 10.51 36.01 0.38 0.07 16 2 C 0.20 2.10 8.31 -13.02 -0.11 1.99 16 3 N -0.45 -6.60 11.35 -7.56 -0.09 -6.69 16 4 C 0.06 0.90 7.10 -82.92 -0.59 0.31 16 5 C 0.24 4.06 8.08 -156.08 -1.26 2.79 16 6 N -0.38 -6.10 12.19 30.99 0.38 -5.72 16 7 O 0.08 1.29 11.29 18.01 0.20 1.49 16 8 C 0.21 3.44 7.75 -12.98 -0.10 3.34 16 9 C -0.03 -0.52 5.84 -27.89 -0.16 -0.68 16 10 C -0.11 -2.09 5.14 -26.73 -0.14 -2.23 16 11 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 12 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 13 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 16 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 N -0.46 -8.39 11.58 -9.86 -0.11 -8.51 16 21 C -0.02 -0.24 12.12 29.79 0.36 0.13 16 22 O -0.20 -2.05 10.74 5.88 0.06 -1.99 16 23 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.11 1.65 8.14 -51.93 -0.42 1.22 16 27 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.23 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 303.07 15.07 4.57 4.57 Total: -1.00 -33.53 303.07 -5.21 -38.74 By element: Atomic # 1 Polarization: -1.86 SS G_CDS: -3.77 Total: -5.63 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -2.17 Total: -7.11 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.91 Total: -46.53 kcal Atomic # 8 Polarization: -0.76 SS G_CDS: 0.27 Total: -0.50 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.53 -5.21 -38.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594531775.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.710 kcal (2) G-P(sol) polarization free energy of solvation -33.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds