Wall clock time and date at job start Mon Mar 30 2020 06:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30080 * 125.43649 * 2 1 4 4 C 1.35787 * 108.53365 * 180.15062 * 3 2 1 5 5 C 1.48305 * 126.37859 * 179.85814 * 4 3 2 6 6 N 1.30835 * 126.42168 * 179.68449 * 5 4 3 7 7 O 1.21285 * 110.08625 * 179.70893 * 6 5 4 8 8 C 1.33681 * 110.03693 * 0.47156 * 7 6 5 9 9 C 1.50696 * 126.42804 * 179.79834 * 8 7 6 10 10 C 1.52997 * 109.47055 * 269.69091 * 9 8 7 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47418 * 89.99710 * 16 14 12 18 18 H 1.48498 * 109.47091 * 209.99770 * 16 14 12 19 19 H 1.48508 * 109.47394 * 329.99535 * 16 14 12 20 20 N 1.30970 * 107.13790 * 359.53560 * 8 7 6 21 21 C 1.35595 * 107.23517 * 359.59761 * 4 3 2 22 22 O 1.33981 * 125.43598 * 179.70354 * 2 1 3 23 23 H 1.09000 * 109.46924 * 180.27049 * 1 2 3 24 24 H 1.08997 * 109.47140 * 300.26797 * 1 2 3 25 25 H 1.09000 * 109.47148 * 60.27031 * 1 2 3 26 26 H 1.08996 * 109.47197 * 149.69293 * 9 8 7 27 27 H 1.09001 * 109.47328 * 29.68820 * 9 8 7 28 28 H 1.09001 * 109.47502 * 60.00512 * 10 9 8 29 29 H 1.09001 * 109.47289 * 300.00308 * 10 9 8 30 30 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 31 31 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 32 32 H 0.96996 * 120.00505 * 179.97438 * 15 14 12 33 33 H 1.07999 * 126.50323 * 180.21615 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2612 1.0598 0.0000 4 6 3.5604 0.6650 -0.0034 5 6 4.7492 1.5517 -0.0075 6 7 6.0013 1.1723 -0.0050 7 8 6.7303 2.1416 -0.0156 8 6 6.0019 3.2625 -0.0158 9 6 6.5310 4.6735 -0.0229 10 6 6.7095 5.1584 1.4172 11 6 7.2462 6.5913 1.4100 12 6 7.4226 7.0687 2.8285 13 1 7.1762 6.4156 3.6526 14 6 7.8976 8.3396 3.0740 15 7 8.1971 9.1350 2.0705 16 14 8.1156 8.9316 4.8323 17 1 9.4846 8.5978 5.3009 18 1 7.9184 10.4024 4.8874 19 1 7.1170 8.2652 5.7065 20 7 4.7422 2.9042 -0.0145 21 6 3.5683 -0.6909 0.0036 22 8 2.2838 -1.0916 0.0056 23 1 -0.3633 -1.0277 0.0049 24 1 -0.3633 0.5180 0.8875 25 1 -0.3633 0.5096 -0.8924 26 1 5.8255 5.3235 -0.5403 27 1 7.4921 4.6986 -0.5364 28 1 7.4152 4.5085 1.9347 29 1 5.7485 5.1333 1.9308 30 1 8.2072 6.6167 0.8964 31 1 6.5403 7.2410 0.8927 32 1 8.5309 10.0291 2.2432 33 1 4.4401 -1.3283 0.0066 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594531775.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:32 Heat of formation + Delta-G solvation = 48.769889 kcal Electronic energy + Delta-G solvation = -18263.085097 eV Core-core repulsion = 15099.578852 eV Total energy + Delta-G solvation = -3163.506245 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.70382 -44.51725 -37.45914 -36.87449 -35.78505 -34.82741 -33.50691 -32.52594 -29.61733 -28.79549 -26.11659 -26.02046 -24.17962 -22.89446 -22.28165 -21.54384 -19.28342 -19.18536 -18.42941 -17.94449 -17.92784 -16.65858 -16.55211 -16.09202 -15.61785 -15.00469 -14.66001 -14.38213 -14.09645 -13.95700 -13.82000 -13.61178 -13.32366 -13.12944 -12.83173 -12.64136 -12.48631 -12.25960 -12.21497 -11.83222 -11.56458 -11.54118 -11.31850 -10.99894 -10.51633 -9.94273 -8.17919 -6.27372 -0.35031 0.23792 0.82296 1.42332 1.42865 1.50383 1.53695 1.65384 1.78151 2.09714 2.43219 2.57154 3.16213 3.31956 3.57313 3.88594 4.16049 4.19565 4.26908 4.31711 4.46610 4.64069 4.66257 4.70081 4.76136 4.83446 4.97502 5.01765 5.18436 5.19423 5.54045 5.76194 5.88006 6.27344 6.43934 6.88663 6.93306 7.41271 8.93570 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.031553 B = 0.003202 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.169048 B = 8741.658482 C = 9173.063875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.209 3.791 3 N -0.499 5.499 4 C 0.012 3.988 5 C 0.238 3.762 6 N -0.382 5.382 7 O 0.082 5.918 8 C 0.215 3.785 9 C -0.022 4.022 10 C -0.093 4.093 11 C 0.026 3.974 12 C -0.545 4.545 13 H 0.055 0.945 14 C 0.004 3.996 15 N -0.929 5.929 16 Si 0.959 3.041 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.268 1.268 20 N -0.494 5.494 21 C 0.008 3.992 22 O -0.192 6.192 23 H 0.119 0.881 24 H 0.109 0.891 25 H 0.111 0.889 26 H 0.116 0.884 27 H 0.128 0.872 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.011 0.989 31 H 0.003 0.997 32 H 0.264 0.736 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.906 -21.071 -6.053 24.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.001 4.001 3 N -0.229 5.229 4 C -0.106 4.106 5 C -0.032 4.032 6 N -0.091 5.091 7 O 0.023 5.977 8 C -0.005 4.005 9 C -0.061 4.061 10 C -0.131 4.131 11 C -0.011 4.011 12 C -0.583 4.583 13 H 0.073 0.927 14 C -0.194 4.194 15 N -0.569 5.569 16 Si 0.784 3.216 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.193 1.193 20 N -0.227 5.227 21 C -0.068 4.068 22 O -0.078 6.078 23 H 0.138 0.862 24 H 0.128 0.872 25 H 0.130 0.870 26 H 0.134 0.866 27 H 0.146 0.854 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.029 0.971 31 H 0.021 0.979 32 H 0.073 0.927 33 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -12.301 -21.070 -6.091 25.146 hybrid contribution 0.807 0.310 0.821 1.192 sum -11.494 -20.759 -5.270 24.307 Atomic orbital electron populations 1.20644 0.77130 1.07120 1.06438 1.27417 0.98228 0.77201 0.97214 1.70681 1.00695 1.31643 1.19864 1.18437 0.88623 0.90621 1.12934 1.22681 0.90769 0.88105 1.01693 1.74796 1.02197 1.09664 1.22457 1.85260 1.35074 1.11655 1.65742 1.29341 0.84583 0.94009 0.92546 1.20562 1.04215 0.80838 1.00446 1.21448 1.00586 0.97970 0.93136 1.18987 0.95523 0.90890 0.95700 1.21671 1.43349 0.99346 0.93935 0.92667 1.25864 0.95182 0.97076 1.01321 1.70057 1.45566 1.08605 1.32687 0.85541 0.78774 0.77378 0.79929 1.19722 1.20735 1.19256 1.72160 1.19560 1.09653 1.21331 1.25511 0.86095 0.94127 1.01029 1.84500 1.16152 1.37634 1.69491 0.86203 0.87243 0.87025 0.86601 0.85398 0.92057 0.93477 0.97096 0.97903 0.92720 0.72606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 10.51 71.24 0.75 0.27 16 2 C 0.21 4.12 8.31 88.37 0.73 4.86 16 3 N -0.50 -14.53 11.35 -292.69 -3.32 -17.85 16 4 C 0.01 0.34 7.10 40.60 0.29 0.63 16 5 C 0.24 7.94 8.08 137.23 1.11 9.05 16 6 N -0.38 -11.94 12.19 -59.00 -0.72 -12.66 16 7 O 0.08 2.55 11.29 74.51 0.84 3.39 16 8 C 0.21 6.94 7.75 88.35 0.68 7.63 16 9 C -0.02 -0.67 5.84 29.85 0.17 -0.50 16 10 C -0.09 -3.61 5.14 30.60 0.16 -3.45 16 11 C 0.03 1.30 4.97 29.85 0.15 1.44 16 12 C -0.54 -30.44 9.11 25.60 0.23 -30.21 16 13 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 14 C 0.00 0.21 5.46 84.65 0.46 0.67 16 15 N -0.93 -55.20 13.29 21.45 0.28 -54.92 16 16 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 20 N -0.49 -17.96 11.58 -302.38 -3.50 -21.47 16 21 C 0.01 0.15 12.12 67.21 0.81 0.97 16 22 O -0.19 -3.56 10.74 -1.88 -0.02 -3.58 16 23 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 24 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 27 H 0.13 3.25 8.14 -2.39 -0.02 3.23 16 28 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 33 H 0.26 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -72.99 303.07 2.27 -70.71 By element: Atomic # 1 Polarization: -2.16 SS G_CDS: 1.13 Total: -1.03 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: 5.56 Total: -8.63 kcal Atomic # 7 Polarization: -99.64 SS G_CDS: -7.26 Total: -106.89 kcal Atomic # 8 Polarization: -1.02 SS G_CDS: 0.82 Total: -0.20 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -72.99 2.27 -70.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594531775.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.482 kcal (2) G-P(sol) polarization free energy of solvation -72.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds