Wall clock time and date at job start Mon Mar 30 2020 06:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.34549 * 126.50980 * 2 1 4 4 C 1.33979 * 108.11518 * 180.02562 * 3 2 1 5 5 N 1.30082 * 109.12478 * 359.75520 * 4 3 2 6 6 C 1.35604 * 126.50084 * 179.97438 * 2 1 3 7 7 C 1.48298 * 126.38045 * 359.96505 * 6 2 1 8 8 N 1.30836 * 126.42638 * 359.97438 * 7 6 2 9 9 O 1.21296 * 110.08511 * 179.97438 * 8 7 6 10 10 C 1.33661 * 110.03955 * 359.97438 * 9 8 7 11 11 C 1.50701 * 126.43010 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47212 * 270.02463 * 11 10 9 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47592 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00057 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00356 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99989 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00117 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47114 * 60.00582 * 18 16 14 20 20 H 1.48503 * 109.47134 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47402 * 300.00322 * 18 16 14 22 22 N 1.30975 * 107.14385 * 0.26557 * 10 9 8 23 23 H 1.08997 * 109.46873 * 270.00451 * 1 2 3 24 24 H 1.09000 * 109.46554 * 30.00408 * 1 2 3 25 25 H 1.08993 * 109.47107 * 150.00220 * 1 2 3 26 26 H 1.07993 * 125.43951 * 180.02562 * 4 3 2 27 27 H 1.09002 * 109.47060 * 30.02518 * 11 10 9 28 28 H 1.09001 * 109.47380 * 150.02606 * 11 10 9 29 29 H 1.09002 * 109.47153 * 299.99998 * 12 11 10 30 30 H 1.08998 * 109.47533 * 59.99628 * 12 11 10 31 31 H 1.09002 * 109.47103 * 300.00247 * 13 12 11 32 32 H 1.09001 * 109.47066 * 60.00169 * 13 12 11 33 33 H 0.96996 * 119.99885 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3076 1.0814 0.0000 4 6 3.5789 0.6587 -0.0006 5 7 3.5955 -0.6420 0.0043 6 6 2.3137 -1.0901 0.0005 7 6 1.8772 -2.5073 0.0018 8 7 0.6424 -2.9399 0.0033 9 8 0.6260 -4.1528 0.0036 10 6 1.8753 -4.6278 0.0018 11 6 2.2809 -6.0792 0.0010 12 6 2.4195 -6.5708 1.4432 13 6 2.8307 -8.0444 1.4425 14 6 2.9678 -8.5285 2.8630 15 1 2.7801 -7.8527 3.6843 16 6 3.3320 -9.8344 3.1143 17 7 3.5601 -10.6575 2.1142 18 14 3.5027 -10.4341 4.8751 19 1 2.2032 -10.2826 5.5778 20 1 3.9016 -11.8646 4.8744 21 1 4.5393 -9.6320 5.5730 22 7 2.6810 -3.5952 0.0062 23 1 -0.3633 0.0001 1.0277 24 1 -0.3632 0.8900 -0.5139 25 1 -0.3633 -0.8899 -0.5138 26 1 4.4508 1.2960 -0.0003 27 1 1.5211 -6.6685 -0.5123 28 1 3.2354 -6.1895 -0.5137 29 1 3.1794 -5.9815 1.9565 30 1 1.4652 -6.4605 1.9581 31 1 2.0705 -8.6335 0.9293 32 1 3.7850 -8.1551 0.9276 33 1 3.8167 -11.5760 2.2910 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594541934.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:13 Heat of formation + Delta-G solvation = 75.632730 kcal Electronic energy + Delta-G solvation = -18486.821737 eV Core-core repulsion = 15324.480352 eV Total energy + Delta-G solvation = -3162.341385 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.43575 -43.65564 -36.22904 -35.48591 -34.55557 -33.38152 -32.47841 -31.08370 -27.77682 -27.71526 -24.86992 -24.20627 -22.64220 -22.44075 -20.79983 -20.28033 -18.17019 -17.94813 -17.03861 -16.95704 -16.30622 -15.31944 -14.84912 -14.68286 -14.42657 -14.14315 -13.61376 -13.44481 -12.85357 -12.61010 -12.46100 -12.41797 -12.07871 -11.47972 -11.29161 -11.00532 -10.89562 -10.85425 -10.79998 -10.60152 -10.08315 -9.82259 -9.43415 -9.15326 -8.90790 -8.36819 -6.02359 -4.04820 0.70957 1.32207 1.93011 2.27573 2.89071 2.94023 3.21062 3.33755 3.38024 3.40904 3.73471 4.17327 4.45015 4.56205 4.81367 4.94382 5.09998 5.16836 5.33914 5.47640 5.52764 5.57722 5.64506 5.67418 5.83583 6.05135 6.12559 6.49848 6.64290 6.95783 7.28180 7.61323 7.73241 7.96116 8.20018 8.37703 9.01136 9.59508 11.08916 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.035965 B = 0.003286 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.341010 B = 8517.764694 C = 8744.085410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.011 3.989 3 O -0.200 6.200 4 C 0.176 3.824 5 N -0.450 5.450 6 C 0.052 3.948 7 C 0.246 3.754 8 N -0.383 5.383 9 O 0.079 5.921 10 C 0.211 3.789 11 C -0.033 4.033 12 C -0.107 4.107 13 C 0.023 3.977 14 C -0.523 4.523 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 N -0.465 5.465 23 H 0.092 0.908 24 H 0.084 0.916 25 H 0.103 0.897 26 H 0.258 0.742 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.021 0.979 32 H 0.021 0.979 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.208 21.427 -6.585 23.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.047 4.047 3 O -0.086 6.086 4 C -0.053 4.053 5 N -0.177 5.177 6 C -0.067 4.067 7 C -0.024 4.024 8 N -0.093 5.093 9 O 0.019 5.981 10 C -0.009 4.009 11 C -0.072 4.072 12 C -0.146 4.146 13 C -0.014 4.014 14 C -0.561 4.561 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 N -0.197 5.197 23 H 0.110 0.890 24 H 0.103 0.897 25 H 0.122 0.878 26 H 0.274 0.726 27 H 0.120 0.880 28 H 0.128 0.872 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.896 21.625 -6.622 23.140 hybrid contribution -0.130 -0.079 0.997 1.009 sum -5.026 21.546 -5.624 22.828 Atomic orbital electron populations 1.20492 0.82785 1.05134 1.04647 1.23487 0.95072 0.83431 1.02669 1.84422 1.18549 1.35760 1.69900 1.28131 0.85398 0.90848 1.00879 1.70700 1.21182 1.09758 1.16069 1.17947 0.88933 0.88650 1.11199 1.22244 0.85285 0.92777 1.02115 1.74802 1.20293 0.91839 1.22324 1.85274 1.32442 1.14548 1.65806 1.29416 0.78667 1.00063 0.92773 1.20709 1.03654 0.80064 1.02797 1.21752 1.01544 1.00824 0.90480 1.19098 0.97024 0.87741 0.97510 1.21165 1.46716 0.95883 0.92358 0.92680 1.25001 0.95338 0.96898 0.97086 1.69943 1.47114 1.05644 1.30698 0.86646 0.78588 0.77668 0.85045 1.20220 1.21264 1.20224 1.72179 1.30728 0.96412 1.20425 0.88984 0.89739 0.87845 0.72640 0.88025 0.87242 0.92278 0.92483 0.96031 0.96034 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.00 36.01 0.36 -0.26 16 2 C 0.01 0.13 7.43 -35.25 -0.26 -0.14 16 3 O -0.20 -2.00 10.74 5.90 0.06 -1.94 16 4 C 0.18 1.64 13.21 52.02 0.69 2.33 16 5 N -0.45 -6.42 11.35 -11.38 -0.13 -6.55 16 6 C 0.05 0.77 7.10 -82.92 -0.59 0.18 16 7 C 0.25 4.09 8.04 -156.08 -1.25 2.84 16 8 N -0.38 -5.92 10.34 30.99 0.32 -5.60 16 9 O 0.08 1.22 11.29 18.06 0.20 1.43 16 10 C 0.21 3.41 7.75 -12.98 -0.10 3.31 16 11 C -0.03 -0.52 5.84 -27.88 -0.16 -0.68 16 12 C -0.11 -2.08 5.13 -26.74 -0.14 -2.22 16 13 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 14 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 15 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 18 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 N -0.46 -8.37 11.58 -9.86 -0.11 -8.49 16 23 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.10 0.97 6.63 -51.93 -0.34 0.62 16 26 H 0.26 0.91 8.06 -52.49 -0.42 0.49 16 27 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 28 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 299.35 15.07 4.51 4.51 Total: -1.00 -33.53 299.35 -5.13 -38.66 By element: Atomic # 1 Polarization: -1.71 SS G_CDS: -3.69 Total: -5.40 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -2.01 Total: -7.46 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.81 Total: -46.24 kcal Atomic # 8 Polarization: -0.78 SS G_CDS: 0.27 Total: -0.51 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.53 -5.13 -38.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594541934.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.291 kcal (2) G-P(sol) polarization free energy of solvation -33.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds