Wall clock time and date at job start Mon Mar 30 2020 06:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.34549 * 126.50980 * 2 1 4 4 C 1.33979 * 108.11518 * 180.02562 * 3 2 1 5 5 N 1.30082 * 109.12478 * 359.75520 * 4 3 2 6 6 C 1.35604 * 126.50084 * 179.97438 * 2 1 3 7 7 C 1.48298 * 126.38045 * 359.96505 * 6 2 1 8 8 N 1.30836 * 126.42638 * 359.97438 * 7 6 2 9 9 O 1.21296 * 110.08511 * 179.97438 * 8 7 6 10 10 C 1.33661 * 110.03955 * 359.97438 * 9 8 7 11 11 C 1.50701 * 126.43010 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47212 * 270.02463 * 11 10 9 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47592 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00057 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00356 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99989 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00117 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47114 * 60.00582 * 18 16 14 20 20 H 1.48503 * 109.47134 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47402 * 300.00322 * 18 16 14 22 22 N 1.30975 * 107.14385 * 0.26557 * 10 9 8 23 23 H 1.08997 * 109.46873 * 270.00451 * 1 2 3 24 24 H 1.09000 * 109.46554 * 30.00408 * 1 2 3 25 25 H 1.08993 * 109.47107 * 150.00220 * 1 2 3 26 26 H 1.07993 * 125.43951 * 180.02562 * 4 3 2 27 27 H 1.09002 * 109.47060 * 30.02518 * 11 10 9 28 28 H 1.09001 * 109.47380 * 150.02606 * 11 10 9 29 29 H 1.09002 * 109.47153 * 299.99998 * 12 11 10 30 30 H 1.08998 * 109.47533 * 59.99628 * 12 11 10 31 31 H 1.09002 * 109.47103 * 300.00247 * 13 12 11 32 32 H 1.09001 * 109.47066 * 60.00169 * 13 12 11 33 33 H 0.96996 * 119.99885 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3076 1.0814 0.0000 4 6 3.5789 0.6587 -0.0006 5 7 3.5955 -0.6420 0.0043 6 6 2.3137 -1.0901 0.0005 7 6 1.8772 -2.5073 0.0018 8 7 0.6424 -2.9399 0.0033 9 8 0.6260 -4.1528 0.0036 10 6 1.8753 -4.6278 0.0018 11 6 2.2809 -6.0792 0.0010 12 6 2.4195 -6.5708 1.4432 13 6 2.8307 -8.0444 1.4425 14 6 2.9678 -8.5285 2.8630 15 1 2.7801 -7.8527 3.6843 16 6 3.3320 -9.8344 3.1143 17 7 3.5601 -10.6575 2.1142 18 14 3.5027 -10.4341 4.8751 19 1 2.2032 -10.2826 5.5778 20 1 3.9016 -11.8646 4.8744 21 1 4.5393 -9.6320 5.5730 22 7 2.6810 -3.5952 0.0062 23 1 -0.3633 0.0001 1.0277 24 1 -0.3632 0.8900 -0.5139 25 1 -0.3633 -0.8899 -0.5138 26 1 4.4508 1.2960 -0.0003 27 1 1.5211 -6.6685 -0.5123 28 1 3.2354 -6.1895 -0.5137 29 1 3.1794 -5.9815 1.9565 30 1 1.4652 -6.4605 1.9581 31 1 2.0705 -8.6335 0.9293 32 1 3.7850 -8.1551 0.9276 33 1 3.8167 -11.5760 2.2910 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594541934.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:12 Heat of formation + Delta-G solvation = 50.514227 kcal Electronic energy + Delta-G solvation = -18487.910957 eV Core-core repulsion = 15324.480352 eV Total energy + Delta-G solvation = -3163.430605 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.66608 -44.49108 -37.43739 -36.88124 -35.70246 -34.85578 -33.81689 -32.48581 -29.48341 -28.55896 -26.10667 -25.79783 -23.93126 -23.34631 -22.28209 -21.54438 -19.26452 -19.15971 -18.41342 -17.95945 -17.87933 -16.58559 -16.20880 -16.08453 -15.63613 -15.41326 -14.59963 -14.38521 -14.11636 -14.06401 -13.81185 -13.56319 -13.36573 -13.07871 -12.83200 -12.61636 -12.49347 -12.28230 -12.22142 -11.73883 -11.55544 -11.54437 -11.32517 -10.99119 -10.50913 -9.84502 -8.17417 -6.26986 -0.33320 0.25436 0.91226 1.42702 1.44665 1.48385 1.52473 1.68533 1.82452 2.22795 2.43688 2.62808 3.16593 3.42491 3.61245 3.81430 4.14281 4.17080 4.20468 4.27633 4.38398 4.49097 4.71154 4.74556 4.80801 4.93885 5.02340 5.04749 5.12339 5.19548 5.54181 5.76559 5.88312 6.27673 6.44898 6.88854 6.96866 7.41571 8.93840 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.035965 B = 0.003286 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.341010 B = 8517.764694 C = 8744.085410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.027 3.973 3 O -0.194 6.194 4 C 0.204 3.796 5 N -0.505 5.505 6 C 0.003 3.997 7 C 0.239 3.761 8 N -0.378 5.378 9 O 0.080 5.920 10 C 0.214 3.786 11 C -0.022 4.022 12 C -0.092 4.092 13 C 0.026 3.974 14 C -0.546 4.546 15 H 0.055 0.945 16 C 0.004 3.996 17 N -0.929 5.929 18 Si 0.959 3.041 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.271 1.271 22 N -0.495 5.495 23 H 0.104 0.896 24 H 0.113 0.887 25 H 0.092 0.908 26 H 0.309 0.691 27 H 0.128 0.872 28 H 0.115 0.885 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.011 0.989 32 H 0.002 0.998 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.713 23.226 -6.134 24.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.031 4.031 3 O -0.080 6.080 4 C -0.024 4.024 5 N -0.232 5.232 6 C -0.114 4.114 7 C -0.031 4.031 8 N -0.089 5.089 9 O 0.022 5.978 10 C -0.005 4.005 11 C -0.061 4.061 12 C -0.131 4.131 13 C -0.011 4.011 14 C -0.584 4.584 15 H 0.074 0.926 16 C -0.194 4.194 17 N -0.569 5.569 18 Si 0.784 3.216 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.196 1.196 22 N -0.229 5.229 23 H 0.122 0.878 24 H 0.132 0.868 25 H 0.110 0.890 26 H 0.324 0.676 27 H 0.146 0.854 28 H 0.133 0.867 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.029 0.971 32 H 0.020 0.980 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.418 23.419 -6.172 24.818 hybrid contribution 0.052 -0.518 0.830 0.980 sum -5.366 22.901 -5.341 24.121 Atomic orbital electron populations 1.20634 0.80776 1.06004 1.05598 1.23912 0.96132 0.82826 1.00229 1.84473 1.18813 1.35021 1.69714 1.29261 0.86167 0.90054 0.96966 1.70636 1.21559 1.12201 1.18841 1.18149 0.90139 0.88548 1.14601 1.22649 0.85253 0.93591 1.01611 1.74783 1.19895 0.91625 1.22554 1.85258 1.32054 1.14734 1.65788 1.29304 0.78800 0.99825 0.92616 1.20551 1.05017 0.80090 1.00393 1.21443 1.01087 0.97462 0.93132 1.18983 0.95738 0.90688 0.95680 1.21648 1.46524 0.96312 0.93940 0.92644 1.25867 0.95011 0.97181 1.01362 1.70056 1.47994 1.05998 1.32848 0.85599 0.78914 0.77188 0.79946 1.19231 1.20753 1.19649 1.72158 1.31892 0.97401 1.21411 0.87812 0.86809 0.88957 0.67599 0.85420 0.86697 0.93510 0.92046 0.97083 0.97959 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.09 10.00 71.24 0.71 -0.38 16 2 C 0.03 0.59 7.43 25.08 0.19 0.78 16 3 O -0.19 -3.38 10.74 -1.81 -0.02 -3.40 16 4 C 0.20 3.31 13.21 130.50 1.72 5.03 16 5 N -0.50 -14.07 11.35 -304.80 -3.46 -17.53 16 6 C 0.00 0.09 7.10 40.60 0.29 0.38 16 7 C 0.24 7.99 8.04 137.23 1.10 9.09 16 8 N -0.38 -11.62 10.34 -58.98 -0.61 -12.23 16 9 O 0.08 2.46 11.29 74.68 0.84 3.30 16 10 C 0.21 6.90 7.75 88.36 0.68 7.59 16 11 C -0.02 -0.67 5.84 29.85 0.17 -0.49 16 12 C -0.09 -3.60 5.13 30.59 0.16 -3.44 16 13 C 0.03 1.30 4.97 29.84 0.15 1.45 16 14 C -0.55 -30.51 9.11 25.60 0.23 -30.28 16 15 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 16 C 0.00 0.23 5.46 84.65 0.46 0.69 16 17 N -0.93 -55.21 13.29 21.45 0.28 -54.93 16 18 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 22 N -0.50 -18.03 11.58 -302.37 -3.50 -21.53 16 23 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.09 1.61 6.63 -2.39 -0.02 1.60 16 26 H 0.31 0.96 8.06 -2.91 -0.02 0.94 16 27 H 0.13 3.24 8.14 -2.39 -0.02 3.22 16 28 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 33 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -73.61 299.35 2.57 -71.04 By element: Atomic # 1 Polarization: -2.26 SS G_CDS: 1.13 Total: -1.13 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: 5.87 Total: -9.59 kcal Atomic # 7 Polarization: -98.93 SS G_CDS: -7.29 Total: -106.21 kcal Atomic # 8 Polarization: -0.93 SS G_CDS: 0.82 Total: -0.10 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -73.61 2.57 -71.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594541934.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.558 kcal (2) G-P(sol) polarization free energy of solvation -73.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds