Wall clock time and date at job start Mon Mar 30 2020 06:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29994 * 126.87201 * 2 1 4 4 O 1.20845 * 111.97985 * 180.02562 * 3 2 1 5 5 C 1.33901 * 111.87313 * 359.72808 * 4 3 2 6 6 C 1.50694 * 126.87818 * 180.33515 * 5 4 3 7 7 C 1.36705 * 106.24292 * 0.43896 * 5 4 3 8 8 C 1.48331 * 128.17439 * 179.85946 * 7 5 4 9 9 N 1.30821 * 126.41845 * 179.70371 * 8 7 5 10 10 O 1.21297 * 110.08483 * 179.68322 * 9 8 7 11 11 C 1.33662 * 110.03577 * 0.46713 * 10 9 8 12 12 C 1.50696 * 126.43340 * 179.79786 * 11 10 9 13 13 H 1.08998 * 109.47310 * 179.69352 * 12 11 10 14 14 C 1.53006 * 109.47193 * 59.68786 * 12 11 10 15 15 C 1.50704 * 109.47342 * 299.69331 * 12 11 10 16 16 H 1.08007 * 119.99567 * 5.68559 * 15 12 11 17 17 C 1.37869 * 120.00399 * 185.41264 * 15 12 11 18 18 N 1.31518 * 119.99969 * 355.12471 * 17 15 12 19 19 Si 1.86803 * 120.00200 * 175.12615 * 17 15 12 20 20 H 1.48506 * 109.46812 * 94.99955 * 19 17 15 21 21 H 1.48493 * 109.47356 * 214.99803 * 19 17 15 22 22 H 1.48496 * 109.47142 * 335.00128 * 19 17 15 23 23 N 1.30982 * 107.13709 * 359.53787 * 11 10 9 24 24 H 1.09008 * 109.46544 * 269.96964 * 1 2 3 25 25 H 1.08994 * 109.47220 * 29.96642 * 1 2 3 26 26 H 1.08997 * 109.46888 * 149.97579 * 1 2 3 27 27 H 1.09001 * 109.47106 * 270.12682 * 6 5 4 28 28 H 1.09000 * 109.47196 * 30.12193 * 6 5 4 29 29 H 1.09000 * 109.47138 * 150.13075 * 6 5 4 30 30 H 1.09000 * 109.46432 * 54.94736 * 14 12 11 31 31 H 1.08999 * 109.46947 * 174.94657 * 14 12 11 32 32 H 1.08993 * 109.47261 * 294.95161 * 14 12 11 33 33 H 0.97005 * 119.99731 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2870 1.0399 0.0000 4 8 3.4548 0.7294 -0.0005 5 6 3.6176 -0.5997 0.0050 6 6 4.9240 -1.3508 0.0132 7 6 2.3613 -1.1388 -0.0008 8 6 1.9787 -2.5719 -0.0011 9 7 0.7613 -3.0507 -0.0013 10 8 0.7906 -4.2633 -0.0078 11 6 2.0570 -4.6908 -0.0023 12 6 2.5172 -6.1258 -0.0031 13 1 3.6067 -6.1580 -0.0032 14 6 1.9859 -6.8311 -1.2527 15 6 1.9941 -6.8218 1.2269 16 1 1.3146 -6.3076 1.8905 17 6 2.3786 -8.1169 1.5023 18 7 3.1241 -8.7781 0.6439 19 14 1.8406 -8.9325 3.0944 20 1 0.6086 -9.7257 2.8525 21 1 2.9195 -9.8298 3.5801 22 1 1.5658 -7.8906 4.1161 23 7 2.8230 -3.6284 -0.0018 24 1 -0.3633 -0.0005 1.0278 25 1 -0.3633 0.8902 -0.5133 26 1 -0.3633 -0.8898 -0.5142 27 1 5.2445 -1.5336 -1.0125 28 1 5.6799 -0.7595 0.5300 29 1 4.7926 -2.3026 0.5279 30 1 2.2899 -6.2758 -2.1401 31 1 2.3917 -7.8416 -1.2997 32 1 0.8979 -6.8780 -1.2086 33 1 3.3949 -9.6892 0.8379 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596600183.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:59 Heat of formation + Delta-G solvation = 98.020770 kcal Electronic energy + Delta-G solvation = -19425.795685 eV Core-core repulsion = 16264.425118 eV Total energy + Delta-G solvation = -3161.370567 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.45605 -46.14810 -37.38356 -36.89332 -35.66316 -34.47008 -33.60943 -31.54487 -29.84080 -28.94796 -27.32739 -26.10847 -25.21553 -23.67080 -21.73805 -21.27905 -19.24741 -18.92682 -18.62968 -18.05265 -17.87978 -16.81637 -16.08720 -15.63386 -15.05978 -14.78716 -14.46604 -14.31975 -14.11709 -13.79101 -13.64689 -13.41667 -13.31600 -13.15136 -13.00688 -12.84335 -12.60289 -12.39813 -12.29361 -12.02570 -11.83220 -11.58597 -11.10463 -10.85406 -10.55138 -10.10311 -8.21134 -6.35434 -0.25273 0.38321 0.70714 1.46205 1.49113 1.58105 1.68979 1.71049 2.01944 2.40956 2.54207 2.76793 3.11937 3.18066 3.34255 3.85199 4.14040 4.24493 4.39133 4.50499 4.59402 4.62425 4.68549 4.73642 4.81132 4.85348 4.95514 5.02012 5.07418 5.20692 5.43334 5.69143 5.83389 6.04421 6.66579 6.99644 7.17454 7.33682 8.85542 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.030314 B = 0.004853 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.431693 B = 5768.106518 C = 5985.875810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.052 3.948 3 N -0.377 5.377 4 O 0.104 5.896 5 C 0.047 3.953 6 C -0.078 4.078 7 C -0.173 4.173 8 C 0.241 3.759 9 N -0.399 5.399 10 O 0.064 5.936 11 C 0.244 3.756 12 C 0.128 3.872 13 H 0.063 0.937 14 C -0.125 4.125 15 C -0.544 4.544 16 H 0.053 0.947 17 C 0.035 3.965 18 N -0.902 5.902 19 Si 0.959 3.041 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.275 1.275 23 N -0.506 5.506 24 H 0.091 0.909 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.111 0.889 28 H 0.118 0.882 29 H 0.092 0.908 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.904 11.923 -2.005 12.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.109 4.109 3 N -0.086 5.086 4 O 0.045 5.955 5 C -0.020 4.020 6 C -0.135 4.135 7 C -0.180 4.180 8 C -0.029 4.029 9 N -0.113 5.113 10 O 0.010 5.990 11 C 0.025 3.975 12 C 0.107 3.893 13 H 0.081 0.919 14 C -0.183 4.183 15 C -0.582 4.582 16 H 0.071 0.929 17 C -0.167 4.167 18 N -0.539 5.539 19 Si 0.784 3.216 20 H -0.198 1.198 21 H -0.203 1.203 22 H -0.200 1.200 23 N -0.240 5.240 24 H 0.110 0.890 25 H 0.117 0.883 26 H 0.099 0.901 27 H 0.129 0.871 28 H 0.136 0.864 29 H 0.111 0.889 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.468 13.765 -2.042 13.924 hybrid contribution -0.415 -1.576 0.782 1.807 sum 0.053 12.190 -1.260 12.255 Atomic orbital electron populations 1.20324 0.83854 1.04652 1.04523 1.23857 1.00186 0.86799 1.00070 1.73695 0.89346 1.23443 1.22166 1.84758 1.21199 1.22005 1.67517 1.25152 0.98400 0.83179 0.95310 1.20719 0.87833 0.98848 1.06069 1.18054 0.93987 0.88314 1.17603 1.22665 0.85398 0.93797 1.01065 1.74787 1.21766 0.91079 1.23638 1.85245 1.31989 1.15549 1.66197 1.29860 0.78471 0.99953 0.89203 1.17688 0.97437 0.77164 0.96984 0.91931 1.21696 1.00115 1.02157 0.94351 1.21035 1.30016 0.99252 1.07888 0.92901 1.25502 0.94552 0.97058 0.99604 1.69959 1.36147 1.11925 1.35890 0.85529 0.78240 0.78269 0.79584 1.19783 1.20266 1.20015 1.72016 1.31247 0.96668 1.24096 0.89011 0.88337 0.90095 0.87107 0.86392 0.88941 0.94472 0.90326 0.93810 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.88 10.22 71.24 0.73 -1.15 16 2 C 0.05 1.56 7.37 43.86 0.32 1.88 16 3 N -0.38 -11.03 12.04 -48.49 -0.58 -11.61 16 4 O 0.10 2.77 11.17 73.03 0.82 3.59 16 5 C 0.05 1.26 7.54 25.32 0.19 1.45 16 6 C -0.08 -1.60 10.13 71.23 0.72 -0.87 16 7 C -0.17 -5.68 6.31 -19.92 -0.13 -5.81 16 8 C 0.24 9.26 8.01 137.25 1.10 10.36 16 9 N -0.40 -15.91 10.95 -59.02 -0.65 -16.56 16 10 O 0.06 2.73 11.29 74.67 0.84 3.57 16 11 C 0.24 10.55 6.94 88.35 0.61 11.16 16 12 C 0.13 5.93 2.71 -12.28 -0.03 5.89 16 13 H 0.06 3.08 8.14 -2.39 -0.02 3.06 16 14 C -0.12 -5.35 8.94 71.98 0.64 -4.71 16 15 C -0.54 -27.58 8.47 25.60 0.22 -27.37 16 16 H 0.05 2.73 7.75 -2.91 -0.02 2.71 16 17 C 0.03 1.74 5.36 84.65 0.45 2.20 16 18 N -0.90 -46.39 11.60 21.44 0.25 -46.14 16 19 Si 0.96 40.32 29.54 68.60 2.03 42.35 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 21 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 22 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 23 N -0.51 -20.54 10.09 -302.41 -3.05 -23.60 16 24 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 25 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.08 2.17 7.11 -2.39 -0.02 2.15 16 27 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.09 2.36 6.91 -2.39 -0.02 2.34 16 30 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 3.64 6.46 -2.39 -0.02 3.63 16 32 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.27 13.16 8.31 -92.70 -0.77 12.39 16 Total: -1.00 -56.02 293.52 5.62 -50.40 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 1.14 Total: 4.96 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 4.83 Total: -6.96 kcal Atomic # 7 Polarization: -93.88 SS G_CDS: -4.03 Total: -97.91 kcal Atomic # 8 Polarization: 5.50 SS G_CDS: 1.66 Total: 7.16 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Total: -56.02 5.62 -50.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596600183.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.420 kcal (2) G-P(sol) polarization free energy of solvation -56.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds