Wall clock time and date at job start Mon Mar 30 2020 07:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35981 * 116.99845 * 2 1 4 4 C 1.38550 * 120.08223 * 359.72276 * 3 2 1 5 5 C 1.38241 * 120.01348 * 180.27507 * 4 3 2 6 6 C 1.50702 * 119.90641 * 180.02562 * 5 4 3 7 7 C 1.38273 * 120.18299 * 0.02562 * 5 4 3 8 8 C 1.38196 * 120.16238 * 359.97438 * 7 5 4 9 9 C 1.38721 * 119.98737 * 0.02562 * 8 7 5 10 10 N 1.40125 * 120.09483 * 179.97438 * 9 8 7 11 11 C 1.34773 * 119.99601 * 24.80365 * 10 9 8 12 12 O 1.21298 * 120.00381 * 5.53538 * 11 10 9 13 13 C 1.50703 * 119.99811 * 185.53866 * 11 10 9 14 14 H 1.08992 * 109.47002 * 299.99659 * 13 11 10 15 15 C 1.53001 * 109.47208 * 59.99834 * 13 11 10 16 16 C 1.50701 * 109.46967 * 179.97438 * 13 11 10 17 17 H 1.08002 * 119.99943 * 359.97438 * 16 13 11 18 18 C 1.37877 * 119.99823 * 179.97438 * 16 13 11 19 19 N 1.31518 * 120.00100 * 180.02562 * 18 16 13 20 20 Si 1.86803 * 120.00050 * 359.97438 * 18 16 13 21 21 H 1.48497 * 109.46824 * 90.00286 * 20 18 16 22 22 H 1.48497 * 109.47129 * 209.99858 * 20 18 16 23 23 H 1.48502 * 109.47081 * 330.00079 * 20 18 16 24 24 H 1.09000 * 109.46846 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47143 * 299.99744 * 1 2 3 26 26 H 1.08993 * 109.47548 * 59.99798 * 1 2 3 27 27 H 1.08004 * 119.98997 * 0.26050 * 4 3 2 28 28 H 1.09004 * 109.47252 * 269.97719 * 6 5 4 29 29 H 1.08999 * 109.47333 * 29.97837 * 6 5 4 30 30 H 1.09003 * 109.47312 * 149.98273 * 6 5 4 31 31 H 1.08001 * 119.91685 * 179.97438 * 7 5 4 32 32 H 1.08000 * 120.00729 * 179.97438 * 8 7 5 33 33 H 0.96992 * 120.00185 * 204.80473 * 10 9 8 34 34 H 1.09007 * 109.47001 * 60.00325 * 15 13 11 35 35 H 1.08998 * 109.47034 * 179.97438 * 15 13 11 36 36 H 1.08993 * 109.47075 * 300.00510 * 15 13 11 37 37 H 0.97004 * 120.00201 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2933 2.3746 -0.0058 5 6 1.9223 3.6056 -0.0115 6 6 1.1010 4.8691 -0.0173 7 6 3.3030 3.6808 -0.0120 8 6 4.0613 2.5254 -0.0063 9 6 3.4372 1.2865 -0.0005 10 7 4.2039 0.1136 0.0048 11 6 5.4595 0.1316 0.4942 12 8 5.8908 1.1354 1.0212 13 6 6.3277 -1.0955 0.3867 14 1 5.8524 -1.9240 0.9116 15 6 6.5107 -1.4633 -1.0871 16 6 7.6732 -0.8145 1.0046 17 1 7.8792 0.1557 1.4320 18 6 8.6412 -1.7961 1.0243 19 7 9.8153 -1.5511 1.5640 20 14 8.2847 -3.4745 0.2857 21 1 8.6662 -3.4748 -1.1494 22 1 9.0690 -4.5092 1.0065 23 1 6.8357 -3.7736 0.4130 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.2147 2.3195 -0.0061 28 1 0.9032 5.1693 -1.0463 29 1 0.1567 4.6910 0.4972 30 1 1.6491 5.6611 0.4931 31 1 3.7900 4.6447 -0.0170 32 1 5.1395 2.5870 -0.0071 33 1 3.8310 -0.7111 -0.3438 34 1 6.9862 -0.6347 -1.6120 35 1 7.1390 -2.3505 -1.1648 36 1 5.5377 -1.6663 -1.5344 37 1 10.4965 -2.2416 1.5776 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596863079.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:31 Heat of formation + Delta-G solvation = -69.181719 kcal Electronic energy + Delta-G solvation = -19706.259416 eV Core-core repulsion = 16641.178749 eV Total energy + Delta-G solvation = -3065.080667 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.81188 -40.36982 -38.43372 -36.02683 -35.85385 -33.52495 -32.11506 -31.08106 -28.61905 -27.21965 -27.09052 -24.78619 -23.51999 -22.39562 -20.97772 -19.24555 -18.79598 -18.14743 -17.60268 -17.03458 -16.70053 -16.41899 -16.05151 -15.33848 -15.18290 -14.84485 -14.80919 -14.53175 -14.40101 -14.09514 -13.60054 -13.27611 -13.08310 -12.91964 -12.83748 -12.56955 -12.39236 -12.20732 -12.06570 -11.88678 -11.48419 -11.27243 -11.22551 -10.78118 -10.42845 -9.53739 -8.65569 -8.28118 -6.36615 0.26553 0.42591 1.33361 1.39979 1.51036 1.75140 2.12211 2.33668 2.36454 2.80694 3.05298 3.81688 3.92499 3.97839 4.22353 4.32644 4.37570 4.40826 4.45516 4.53344 4.57104 4.73152 4.75275 4.79919 4.87733 4.90520 4.95493 5.09457 5.20300 5.34220 5.39414 5.48919 5.59221 5.65962 5.87685 6.23061 6.44598 6.57086 6.78988 7.22350 7.35102 8.89333 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029976 B = 0.005043 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.870037 B = 5550.815929 C = 6263.048338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.095 3.905 4 C -0.185 4.185 5 C -0.071 4.071 6 C -0.107 4.107 7 C -0.143 4.143 8 C -0.120 4.120 9 C 0.095 3.905 10 N -0.658 5.658 11 C 0.526 3.474 12 O -0.557 6.557 13 C -0.005 4.005 14 H 0.071 0.929 15 C -0.140 4.140 16 C -0.522 4.522 17 H 0.032 0.968 18 C 0.009 3.991 19 N -0.951 5.951 20 Si 0.958 3.042 21 H -0.259 1.259 22 H -0.298 1.298 23 H -0.232 1.232 24 H 0.118 0.882 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.163 0.837 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.137 0.863 32 H 0.119 0.881 33 H 0.422 0.578 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.573 4.386 -7.792 26.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.048 3.952 4 C -0.204 4.204 5 C -0.072 4.072 6 C -0.164 4.164 7 C -0.162 4.162 8 C -0.141 4.141 9 C 0.000 4.000 10 N -0.304 5.304 11 C 0.316 3.684 12 O -0.434 6.434 13 C -0.027 4.027 14 H 0.089 0.911 15 C -0.197 4.197 16 C -0.560 4.560 17 H 0.051 0.949 18 C -0.188 4.188 19 N -0.590 5.590 20 Si 0.783 3.217 21 H -0.185 1.185 22 H -0.226 1.226 23 H -0.155 1.155 24 H 0.137 0.863 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.181 0.819 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.155 0.845 32 H 0.137 0.863 33 H 0.260 0.740 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.981 4.793 -7.381 25.544 hybrid contribution 0.646 -0.818 0.012 1.042 sum -23.335 3.975 -7.369 24.791 Atomic orbital electron populations 1.23362 0.75981 1.05644 1.02429 1.86002 1.23833 1.25949 1.89116 1.18702 0.89496 0.86197 1.00812 1.21223 1.00980 0.90363 1.07864 1.20060 0.93339 0.96151 0.97661 1.20819 0.99244 0.92830 1.03476 1.21069 0.93935 0.97751 1.03440 1.21258 1.00953 0.91400 1.00468 1.17482 0.88163 0.87415 1.06973 1.43436 1.13672 1.11598 1.61699 1.21319 0.81181 0.90622 0.75313 1.90537 1.73624 1.35886 1.43396 1.19264 0.94097 0.92565 0.96730 0.91110 1.22026 1.01920 1.00885 0.94877 1.21040 0.96931 0.99884 1.38192 0.94941 1.26004 0.94147 1.03360 0.95275 1.70070 1.06125 1.36061 1.46785 0.85722 0.80233 0.77410 0.78335 1.18471 1.22581 1.15509 0.86345 0.91789 0.91121 0.81945 0.89700 0.89963 0.90919 0.84480 0.86294 0.74032 0.93336 0.93153 0.89942 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.33 -7.95 9.91 -93.33 -0.93 -8.88 16 3 C 0.10 2.63 6.70 22.60 0.15 2.78 16 4 C -0.19 -4.04 8.69 22.34 0.19 -3.85 16 5 C -0.07 -1.59 5.88 -19.85 -0.12 -1.71 16 6 C -0.11 -1.48 10.01 71.24 0.71 -0.77 16 7 C -0.14 -4.06 9.69 22.27 0.22 -3.85 16 8 C -0.12 -4.39 8.72 22.38 0.20 -4.20 16 9 C 0.09 3.31 6.45 38.19 0.25 3.55 16 10 N -0.66 -24.01 5.14 -303.13 -1.56 -25.57 16 11 C 0.53 24.31 6.96 87.66 0.61 24.92 16 12 O -0.56 -30.57 12.63 -3.08 -0.04 -30.61 16 13 C 0.00 -0.23 2.23 -12.28 -0.03 -0.26 16 14 H 0.07 3.12 7.20 -2.39 -0.02 3.10 16 15 C -0.14 -5.51 8.58 71.98 0.62 -4.89 16 16 C -0.52 -31.64 8.95 25.60 0.23 -31.41 16 17 H 0.03 2.31 7.00 -2.91 -0.02 2.29 16 18 C 0.01 0.52 5.45 84.65 0.46 0.99 16 19 N -0.95 -61.43 13.96 21.45 0.30 -61.13 16 20 Si 0.96 43.44 24.38 68.60 1.67 45.11 16 21 H -0.26 -10.95 6.87 99.48 0.68 -10.27 16 22 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.23 -9.16 6.53 99.48 0.65 -8.51 16 24 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.06 0.71 7.67 -2.39 -0.02 0.70 16 26 H 0.07 0.69 7.65 -2.39 -0.02 0.67 16 27 H 0.16 2.30 6.30 -2.91 -0.02 2.28 16 28 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 30 H 0.07 0.96 8.08 -2.39 -0.02 0.94 16 31 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 32 H 0.12 5.18 5.79 -2.91 -0.02 5.16 16 33 H 0.42 12.68 7.94 -92.71 -0.74 11.94 16 34 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.05 1.99 3.27 -2.39 -0.01 1.99 16 36 H 0.08 2.46 7.70 -2.39 -0.02 2.44 16 37 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -79.54 302.10 4.33 -75.22 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.28 Total: 23.18 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 4.60 Total: -17.32 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -1.26 Total: -86.70 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -0.96 Total: -39.49 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.67 Total: 45.11 kcal Total: -79.54 4.33 -75.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596863079.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.035 kcal (2) G-P(sol) polarization free energy of solvation -79.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds