Wall clock time and date at job start Mon Mar 30 2020 06:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09009 * 109.46997 * 2 1 4 4 C 1.50702 * 109.47043 * 240.00444 * 2 1 3 5 5 H 1.08001 * 119.99666 * 239.99157 * 4 2 1 6 6 C 1.37876 * 120.00290 * 59.99974 * 4 2 1 7 7 N 1.31512 * 119.99820 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99977 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47294 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47188 * 119.99594 * 8 6 4 11 11 H 1.48497 * 109.46846 * 239.99616 * 8 6 4 12 12 C 1.50696 * 109.47578 * 120.00094 * 2 1 3 13 13 O 1.21284 * 120.00044 * 84.74423 * 12 2 1 14 14 N 1.34779 * 120.00032 * 264.74855 * 12 2 1 15 15 C 1.46539 * 124.97847 * 355.09493 * 14 12 2 16 16 C 1.53731 * 105.28615 * 180.02562 * 15 14 12 17 17 C 1.51224 * 104.58736 * 359.94680 * 16 15 14 18 18 C 1.38208 * 130.94009 * 180.02562 * 17 16 15 19 19 C 1.38186 * 120.18167 * 179.97438 * 18 17 16 20 20 C 1.38523 * 119.80233 * 0.02562 * 19 18 17 21 21 F 1.35096 * 119.91780 * 180.02562 * 20 19 18 22 22 C 1.38062 * 120.17150 * 0.02562 * 20 19 18 23 23 C 1.38580 * 108.55240 * 0.02562 * 17 16 15 24 24 H 1.08995 * 109.47221 * 53.95425 * 1 2 3 25 25 H 1.09002 * 109.46889 * 173.95967 * 1 2 3 26 26 H 1.08999 * 109.46763 * 293.95345 * 1 2 3 27 27 H 0.96995 * 119.99883 * 180.02562 * 7 6 4 28 28 H 1.08999 * 110.29202 * 61.02920 * 15 14 12 29 29 H 1.08996 * 110.29537 * 298.98986 * 15 14 12 30 30 H 1.08999 * 110.41563 * 118.72987 * 16 15 14 31 31 H 1.09003 * 110.41475 * 241.17853 * 16 15 14 32 32 H 1.07997 * 119.90995 * 359.96334 * 18 17 16 33 33 H 1.07999 * 120.09938 * 179.97438 * 19 18 17 34 34 H 1.08001 * 119.87064 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6534 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 3.1465 -2.2869 -3.6039 10 1 1.1661 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8165 12 6 2.0325 -0.7104 1.2304 13 8 2.1439 -1.9181 1.2303 14 7 2.3579 -0.0037 2.3309 15 6 2.3633 1.4591 2.4188 16 6 2.7985 1.7770 3.8585 17 6 3.0127 0.4240 4.4992 18 6 3.4075 0.0799 5.7783 19 6 3.5334 -1.2498 6.1324 20 6 3.2632 -2.2389 5.2009 21 9 3.3850 -3.5397 5.5447 22 6 2.8696 -1.8988 3.9220 23 6 2.7398 -0.5571 3.5593 24 1 -0.3633 0.6047 -0.8309 25 1 -0.3633 -1.0220 -0.1081 26 1 -0.3633 0.4172 0.9392 27 1 0.7082 1.1610 -3.4843 28 1 1.3646 1.8528 2.2297 29 1 3.0751 1.8779 1.7076 30 1 3.7266 2.3485 3.8577 31 1 2.0141 2.3249 4.3807 32 1 3.6183 0.8525 6.5029 33 1 3.8424 -1.5172 7.1321 34 1 2.6597 -2.6739 3.1998 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596996499.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:02 Heat of formation + Delta-G solvation = -55.604947 kcal Electronic energy + Delta-G solvation = -19530.743399 eV Core-core repulsion = 16342.791160 eV Total energy + Delta-G solvation = -3187.952239 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.76266 -40.79249 -38.19804 -35.88117 -33.91159 -32.02120 -30.90308 -29.49248 -28.52885 -25.31226 -24.11880 -23.10130 -21.93739 -21.24590 -19.05592 -17.13301 -16.76817 -16.39996 -15.94750 -15.69795 -15.35254 -15.25334 -14.81355 -14.20079 -13.76330 -13.53158 -13.28474 -12.96454 -12.58540 -12.26966 -12.08158 -11.89840 -11.69921 -11.47208 -11.12909 -11.07199 -10.85881 -10.75080 -10.38830 -10.16918 -9.92421 -9.13619 -8.84253 -8.63500 -8.48650 -7.59234 -6.15966 -4.20456 1.22286 1.34720 3.15110 3.25010 3.28677 3.33821 3.42403 3.81694 4.34053 4.42351 4.48673 4.63046 5.01269 5.11926 5.15642 5.19090 5.27066 5.52155 5.67322 5.76833 5.81762 5.95381 6.10554 6.20252 6.30222 6.47662 6.52918 6.64000 6.71469 6.83946 7.11055 7.33324 7.61740 7.75441 7.90466 8.14477 8.79526 8.85950 9.44900 10.91739 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.028688 B = 0.005376 C = 0.004798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.768082 B = 5207.247651 C = 5833.819182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.038 3.962 3 H 0.049 0.951 4 C -0.506 4.506 5 H 0.068 0.932 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.901 3.099 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.283 1.283 12 C 0.531 3.469 13 O -0.518 6.518 14 N -0.564 5.564 15 C 0.104 3.896 16 C -0.082 4.082 17 C -0.162 4.162 18 C -0.050 4.050 19 C -0.192 4.192 20 C 0.125 3.875 21 F -0.140 7.140 22 C -0.180 4.180 23 C 0.194 3.806 24 H 0.094 0.906 25 H 0.039 0.961 26 H 0.011 0.989 27 H 0.263 0.737 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.025 4.092 14.686 15.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.017 3.983 3 H 0.067 0.933 4 C -0.544 4.544 5 H 0.086 0.914 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.729 3.271 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.209 1.209 12 C 0.325 3.675 13 O -0.391 6.391 14 N -0.287 5.287 15 C -0.019 4.019 16 C -0.119 4.119 17 C -0.165 4.165 18 C -0.069 4.069 19 C -0.212 4.212 20 C 0.105 3.895 21 F -0.119 7.119 22 C -0.201 4.201 23 C 0.096 3.904 24 H 0.113 0.887 25 H 0.058 0.942 26 H 0.030 0.970 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.937 3.478 14.308 15.014 hybrid contribution 0.298 -0.656 -0.796 1.074 sum 3.235 2.822 13.512 14.177 Atomic orbital electron populations 1.21689 0.95552 1.01413 0.99865 1.18933 0.94547 0.96674 0.88162 0.93284 1.21015 1.31822 1.12650 0.88946 0.91397 1.24915 0.94853 0.94965 0.99110 1.69877 1.36554 1.22860 1.23759 0.86364 0.78730 0.79746 0.82262 1.19559 1.20798 1.20888 1.22400 0.74202 0.87838 0.83064 1.90532 1.51193 1.15088 1.82280 1.46710 1.64777 1.07795 1.09397 1.22121 1.03295 0.79325 0.97120 1.21094 1.02633 0.94338 0.93814 1.20119 1.06983 0.95144 0.94299 1.20086 0.97241 0.95279 0.94250 1.20846 1.08252 0.92186 0.99888 1.17277 1.00844 0.78050 0.93316 1.91482 1.93608 1.34261 1.92510 1.20829 1.06776 0.96207 0.96333 1.18299 0.93353 0.92400 0.86394 0.88734 0.94210 0.97010 0.92757 0.89563 0.89462 0.89245 0.89265 0.85057 0.84834 0.83143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.86 37.16 0.33 -2.63 16 2 C 0.04 0.92 2.33 -92.92 -0.22 0.71 16 3 H 0.05 1.17 6.90 -51.92 -0.36 0.81 16 4 C -0.51 -13.98 8.31 -34.44 -0.29 -14.26 16 5 H 0.07 1.98 7.26 -52.49 -0.38 1.60 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.21 11.39 55.43 0.63 -23.58 16 8 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.53 12.27 6.77 -10.99 -0.07 12.20 16 13 O -0.52 -13.40 14.33 5.55 0.08 -13.32 16 14 N -0.56 -10.63 3.13 -112.85 -0.35 -10.98 16 15 C 0.10 1.47 6.13 -3.64 -0.02 1.45 16 16 C -0.08 -0.89 6.93 -27.25 -0.19 -1.08 16 17 C -0.16 -2.20 6.23 -104.25 -0.65 -2.85 16 18 C -0.05 -0.57 10.03 -39.61 -0.40 -0.97 16 19 C -0.19 -2.37 10.04 -39.50 -0.40 -2.77 16 20 C 0.12 1.93 7.28 -39.54 -0.29 1.64 16 21 F -0.14 -2.19 17.26 2.25 0.04 -2.15 16 22 C -0.18 -3.24 9.44 -39.14 -0.37 -3.61 16 23 C 0.19 3.39 6.63 -83.48 -0.55 2.84 16 24 H 0.09 2.34 6.26 -51.93 -0.32 2.01 16 25 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.09 1.20 7.94 -51.93 -0.41 0.79 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.15 3.07 6.31 -52.49 -0.33 2.74 16 LS Contribution 291.08 15.07 4.39 4.39 Total: -1.00 -30.49 291.08 -7.35 -37.84 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -3.90 Total: -0.70 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -3.21 Total: -7.72 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.28 Total: -34.56 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.08 Total: -13.32 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.49 -7.35 -37.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596996499.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.768 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds