Wall clock time and date at job start Mon Mar 30 2020 06:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09009 * 109.46997 * 2 1 4 4 C 1.50702 * 109.47043 * 240.00444 * 2 1 3 5 5 H 1.08001 * 119.99666 * 239.99157 * 4 2 1 6 6 C 1.37876 * 120.00290 * 59.99974 * 4 2 1 7 7 N 1.31512 * 119.99820 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99977 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47294 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47188 * 119.99594 * 8 6 4 11 11 H 1.48497 * 109.46846 * 239.99616 * 8 6 4 12 12 C 1.50696 * 109.47578 * 120.00094 * 2 1 3 13 13 O 1.21284 * 120.00044 * 84.74423 * 12 2 1 14 14 N 1.34779 * 120.00032 * 264.74855 * 12 2 1 15 15 C 1.46539 * 124.97847 * 355.09493 * 14 12 2 16 16 C 1.53731 * 105.28615 * 180.02562 * 15 14 12 17 17 C 1.51224 * 104.58736 * 359.94680 * 16 15 14 18 18 C 1.38208 * 130.94009 * 180.02562 * 17 16 15 19 19 C 1.38186 * 120.18167 * 179.97438 * 18 17 16 20 20 C 1.38523 * 119.80233 * 0.02562 * 19 18 17 21 21 F 1.35096 * 119.91780 * 180.02562 * 20 19 18 22 22 C 1.38062 * 120.17150 * 0.02562 * 20 19 18 23 23 C 1.38580 * 108.55240 * 0.02562 * 17 16 15 24 24 H 1.08995 * 109.47221 * 53.95425 * 1 2 3 25 25 H 1.09002 * 109.46889 * 173.95967 * 1 2 3 26 26 H 1.08999 * 109.46763 * 293.95345 * 1 2 3 27 27 H 0.96995 * 119.99883 * 180.02562 * 7 6 4 28 28 H 1.08999 * 110.29202 * 61.02920 * 15 14 12 29 29 H 1.08996 * 110.29537 * 298.98986 * 15 14 12 30 30 H 1.08999 * 110.41563 * 118.72987 * 16 15 14 31 31 H 1.09003 * 110.41475 * 241.17853 * 16 15 14 32 32 H 1.07997 * 119.90995 * 359.96334 * 18 17 16 33 33 H 1.07999 * 120.09938 * 179.97438 * 19 18 17 34 34 H 1.08001 * 119.87064 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6534 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 3.1465 -2.2869 -3.6039 10 1 1.1661 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8165 12 6 2.0325 -0.7104 1.2304 13 8 2.1439 -1.9181 1.2303 14 7 2.3579 -0.0037 2.3309 15 6 2.3633 1.4591 2.4188 16 6 2.7985 1.7770 3.8585 17 6 3.0127 0.4240 4.4992 18 6 3.4075 0.0799 5.7783 19 6 3.5334 -1.2498 6.1324 20 6 3.2632 -2.2389 5.2009 21 9 3.3850 -3.5397 5.5447 22 6 2.8696 -1.8988 3.9220 23 6 2.7398 -0.5571 3.5593 24 1 -0.3633 0.6047 -0.8309 25 1 -0.3633 -1.0220 -0.1081 26 1 -0.3633 0.4172 0.9392 27 1 0.7082 1.1610 -3.4843 28 1 1.3646 1.8528 2.2297 29 1 3.0751 1.8779 1.7076 30 1 3.7266 2.3485 3.8577 31 1 2.0141 2.3249 4.3807 32 1 3.6183 0.8525 6.5029 33 1 3.8424 -1.5172 7.1321 34 1 2.6597 -2.6739 3.1998 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596996499.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:02 Heat of formation + Delta-G solvation = -73.280108 kcal Electronic energy + Delta-G solvation = -19531.509852 eV Core-core repulsion = 16342.791160 eV Total energy + Delta-G solvation = -3188.718692 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.96412 -42.11270 -39.74382 -37.16364 -35.90518 -33.24405 -32.73713 -30.84895 -29.63736 -27.36950 -25.66436 -24.20729 -23.45810 -22.41120 -20.55678 -18.63888 -18.27802 -18.15705 -17.21070 -17.07001 -16.68293 -16.53262 -16.42598 -15.79718 -15.23939 -14.78442 -14.64087 -14.48140 -14.18118 -13.65244 -13.39378 -13.14448 -13.01139 -12.89870 -12.73864 -12.71313 -12.62217 -12.37174 -12.22203 -12.13730 -11.19209 -11.11007 -10.71266 -10.46810 -9.78007 -8.84425 -8.23689 -6.35053 0.07977 0.17813 1.36268 1.38810 1.50467 1.68273 1.80408 2.39380 2.61560 3.06207 3.20282 3.44454 3.59792 3.94152 4.07454 4.10355 4.17866 4.23265 4.47813 4.63934 4.68090 4.81567 4.90571 4.93085 5.05629 5.07559 5.10948 5.19748 5.30277 5.38302 5.44971 5.61939 5.79967 5.95043 6.05425 6.35897 6.68032 7.11086 7.33315 8.82864 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.028688 B = 0.005376 C = 0.004798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.768082 B = 5207.247651 C = 5833.819182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.037 3.963 3 H 0.053 0.947 4 C -0.535 4.535 5 H 0.038 0.962 6 C 0.028 3.972 7 N -0.904 5.904 8 Si 0.956 3.044 9 H -0.283 1.283 10 H -0.274 1.274 11 H -0.268 1.268 12 C 0.527 3.473 13 O -0.566 6.566 14 N -0.566 5.566 15 C 0.088 3.912 16 C -0.068 4.068 17 C -0.144 4.144 18 C -0.034 4.034 19 C -0.169 4.169 20 C 0.106 3.894 21 F -0.148 7.148 22 C -0.210 4.210 23 C 0.148 3.852 24 H 0.080 0.920 25 H 0.018 0.982 26 H 0.041 0.959 27 H 0.269 0.731 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.186 0.814 33 H 0.171 0.829 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.744 6.787 17.205 18.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.016 3.984 3 H 0.071 0.929 4 C -0.573 4.573 5 H 0.056 0.944 6 C -0.172 4.172 7 N -0.542 5.542 8 Si 0.782 3.218 9 H -0.208 1.208 10 H -0.199 1.199 11 H -0.193 1.193 12 C 0.321 3.679 13 O -0.443 6.443 14 N -0.289 5.289 15 C -0.032 4.032 16 C -0.105 4.105 17 C -0.148 4.148 18 C -0.052 4.052 19 C -0.188 4.188 20 C 0.086 3.914 21 F -0.127 7.127 22 C -0.232 4.232 23 C 0.052 3.948 24 H 0.099 0.901 25 H 0.037 0.963 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.203 0.797 33 H 0.189 0.811 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.661 6.224 16.872 18.352 hybrid contribution 0.105 -1.471 -1.455 2.072 sum 3.765 4.753 15.417 16.566 Atomic orbital electron populations 1.21506 0.94976 0.99946 1.00816 1.18828 0.95038 0.96422 0.88084 0.92868 1.21109 1.32578 1.12494 0.91124 0.94362 1.25524 0.94883 0.95615 1.01194 1.69925 1.36449 1.23169 1.24669 0.85533 0.78430 0.78563 0.79306 1.20837 1.19886 1.19255 1.22030 0.74456 0.87274 0.84166 1.90505 1.53562 1.16865 1.83409 1.46514 1.63914 1.09582 1.08893 1.22525 1.04135 0.76500 1.00074 1.21216 1.05232 0.93169 0.90877 1.20582 1.04696 0.95305 0.94172 1.20681 0.94621 0.95955 0.93974 1.21345 1.05268 0.91769 1.00410 1.17512 1.02078 0.78630 0.93193 1.91456 1.93784 1.35014 1.92412 1.20735 1.09211 0.96147 0.97121 1.18600 0.96281 0.93098 0.86846 0.90085 0.96284 0.94011 0.92183 0.88776 0.89430 0.86093 0.85748 0.79670 0.81115 0.87420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.47 8.86 71.98 0.64 -4.84 16 2 C 0.04 1.90 2.33 -12.29 -0.03 1.87 16 3 H 0.05 2.61 6.90 -2.38 -0.02 2.59 16 4 C -0.53 -30.95 8.31 25.60 0.21 -30.74 16 5 H 0.04 2.39 7.26 -2.91 -0.02 2.36 16 6 C 0.03 1.56 5.30 84.65 0.45 2.01 16 7 N -0.90 -49.34 11.39 21.45 0.24 -49.09 16 8 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 9 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 C 0.53 25.76 6.77 87.66 0.59 26.35 16 13 O -0.57 -31.89 14.33 -3.04 -0.04 -31.93 16 14 N -0.57 -21.73 3.13 -629.32 -1.97 -23.71 16 15 C 0.09 2.36 6.13 86.62 0.53 2.89 16 16 C -0.07 -1.17 6.93 30.26 0.21 -0.96 16 17 C -0.14 -3.39 6.23 -19.62 -0.12 -3.51 16 18 C -0.03 -0.59 10.03 22.25 0.22 -0.37 16 19 C -0.17 -3.50 10.04 22.33 0.22 -3.27 16 20 C 0.11 3.23 7.28 22.30 0.16 3.39 16 21 F -0.15 -4.71 17.26 44.97 0.78 -3.93 16 22 C -0.21 -7.99 9.44 22.55 0.21 -7.78 16 23 C 0.15 5.18 6.63 38.24 0.25 5.44 16 24 H 0.08 4.08 6.26 -2.39 -0.01 4.06 16 25 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 28 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.09 2.29 7.94 -2.39 -0.02 2.28 16 30 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.19 1.37 8.06 -2.91 -0.02 1.34 16 33 H 0.17 2.33 8.06 -2.91 -0.02 2.30 16 34 H 0.11 4.95 6.31 -2.91 -0.02 4.93 16 Total: -1.00 -72.43 291.08 5.71 -66.72 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: 1.12 Total: 5.08 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 3.56 Total: -9.53 kcal Atomic # 7 Polarization: -71.07 SS G_CDS: -1.73 Total: -72.80 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -0.04 Total: -31.93 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.78 Total: -3.93 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -72.43 5.71 -66.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596996499.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.559 kcal (2) G-P(sol) polarization free energy of solvation -72.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds