Wall clock time and date at job start Mon Mar 30 2020 06:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47061 * 2 1 4 4 C 1.50697 * 109.47009 * 120.00101 * 2 1 3 5 5 H 1.08001 * 120.00593 * 120.00051 * 4 2 1 6 6 C 1.37883 * 119.99840 * 299.99894 * 4 2 1 7 7 N 1.31513 * 119.99978 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99814 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47231 * 59.99985 * 8 6 4 10 10 H 1.48503 * 109.46902 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47338 * 299.99889 * 8 6 4 12 12 C 1.50701 * 109.47170 * 239.99888 * 2 1 3 13 13 O 1.21291 * 119.99792 * 274.63328 * 12 2 1 14 14 N 1.34775 * 119.99912 * 94.36142 * 12 2 1 15 15 C 1.46542 * 124.99079 * 354.63554 * 14 12 2 16 16 C 1.53743 * 105.18994 * 179.91882 * 15 14 12 17 17 C 1.51219 * 104.60022 * 0.33041 * 16 15 14 18 18 C 1.38243 * 130.94926 * 179.74917 * 17 16 15 19 19 C 1.38199 * 120.20353 * 180.02562 * 18 17 16 20 20 C 1.38298 * 119.84152 * 0.02562 * 19 18 17 21 21 C 1.38021 * 120.19674 * 359.97438 * 20 19 18 22 22 F 1.35097 * 119.88039 * 179.97438 * 21 20 19 23 23 C 1.38478 * 108.57578 * 359.78934 * 17 16 15 24 24 H 1.08997 * 109.47490 * 182.50646 * 1 2 3 25 25 H 1.08997 * 109.47292 * 302.50512 * 1 2 3 26 26 H 1.08999 * 109.47068 * 62.50546 * 1 2 3 27 27 H 0.97005 * 119.99515 * 179.97438 * 7 6 4 28 28 H 1.08996 * 110.29920 * 298.96560 * 15 14 12 29 29 H 1.09002 * 110.30116 * 61.10915 * 15 14 12 30 30 H 1.09001 * 110.59104 * 241.46140 * 16 15 14 31 31 H 1.09004 * 110.32913 * 119.07088 * 16 15 14 32 32 H 1.08006 * 119.90044 * 0.06780 * 18 17 16 33 33 H 1.07999 * 120.08287 * 179.97438 * 19 18 17 34 34 H 1.08004 * 119.90263 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2393 2.4827 7 7 0.9426 0.8297 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.8074 -1.1190 4.0078 10 1 1.8267 -0.4199 5.2205 11 1 1.8279 -2.5198 4.0082 12 6 2.0323 -0.7104 -1.2305 13 8 2.1544 -1.9172 -1.2266 14 7 2.3406 -0.0054 -2.3369 15 6 2.1251 1.4345 -2.5031 16 6 2.6348 1.7576 -3.9171 17 6 3.1082 0.4297 -4.4643 18 6 3.6602 0.0989 -5.6878 19 6 4.0185 -1.2081 -5.9583 20 6 3.8232 -2.1873 -5.0014 21 6 3.2725 -1.8626 -3.7782 22 9 3.0841 -2.8243 -2.8483 23 6 2.9080 -0.5421 -3.4984 24 1 -0.3634 -1.0266 0.0449 25 1 -0.3634 0.5522 0.8666 26 1 -0.3633 0.4744 -0.9116 27 1 0.7080 1.1608 3.4844 28 1 1.0643 1.6704 -2.4185 29 1 2.6974 1.9907 -1.7606 30 1 3.4611 2.4672 -3.8740 31 1 1.8254 2.1545 -4.5299 32 1 3.8126 0.8644 -6.4344 33 1 4.4492 -1.4644 -6.9150 34 1 4.1025 -3.2092 -5.2119 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597409734.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:08 Heat of formation + Delta-G solvation = -48.463431 kcal Electronic energy + Delta-G solvation = -19954.051672 eV Core-core repulsion = 16766.409113 eV Total energy + Delta-G solvation = -3187.642560 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.10063 -40.61091 -38.19601 -35.92909 -33.84268 -31.84534 -30.73971 -29.24287 -28.84284 -25.26454 -23.96605 -23.01296 -21.68167 -21.39115 -18.93808 -16.98755 -16.57256 -16.15554 -16.02059 -15.94731 -15.03707 -14.69199 -14.59496 -14.30089 -13.60119 -13.38860 -13.19528 -12.81592 -12.44807 -12.17135 -11.83607 -11.81510 -11.65393 -11.36747 -11.11924 -10.98784 -10.75616 -10.71623 -10.36830 -10.13336 -9.94016 -9.10937 -8.71839 -8.52600 -8.40644 -7.42684 -6.10949 -4.15235 1.28436 1.36991 3.24168 3.32567 3.35063 3.38782 3.44391 3.86371 4.38981 4.49490 4.58214 4.70588 4.97774 5.11493 5.17488 5.23013 5.34133 5.44560 5.72171 5.81816 5.89951 5.97296 6.11460 6.20591 6.42386 6.47473 6.56702 6.69168 6.78017 6.89727 7.13763 7.38992 7.67587 7.82358 7.96588 8.21650 8.87901 8.97370 9.49616 10.96480 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.030258 B = 0.005999 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.162667 B = 4666.709993 C = 5249.670377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.041 3.959 3 H 0.047 0.953 4 C -0.505 4.505 5 H 0.067 0.933 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.519 3.481 13 O -0.499 6.499 14 N -0.563 5.563 15 C 0.105 3.895 16 C -0.083 4.083 17 C -0.126 4.126 18 C -0.092 4.092 19 C -0.130 4.130 20 C -0.134 4.134 21 C 0.079 3.921 22 F -0.110 7.110 23 C 0.128 3.872 24 H 0.037 0.963 25 H 0.096 0.904 26 H 0.011 0.989 27 H 0.263 0.737 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.535 3.423 -15.641 16.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.020 3.980 3 H 0.065 0.935 4 C -0.543 4.543 5 H 0.085 0.915 6 C -0.139 4.139 7 N -0.532 5.532 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.200 1.200 12 C 0.312 3.688 13 O -0.371 6.371 14 N -0.287 5.287 15 C -0.018 4.018 16 C -0.121 4.121 17 C -0.130 4.130 18 C -0.110 4.110 19 C -0.149 4.149 20 C -0.153 4.153 21 C 0.056 3.944 22 F -0.088 7.088 23 C 0.030 3.970 24 H 0.056 0.944 25 H 0.114 0.886 26 H 0.030 0.970 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.417 2.809 -15.205 15.835 hybrid contribution 0.270 -0.564 0.976 1.159 sum 3.687 2.244 -14.229 14.869 Atomic orbital electron populations 1.21702 0.95752 1.00777 1.00453 1.18878 0.94454 0.96540 0.88107 0.93468 1.20956 1.31747 1.12616 0.88980 0.91499 1.24913 0.94903 0.94985 0.99059 1.69856 1.36600 1.22872 1.23875 0.86472 0.79236 0.79860 0.81427 1.20153 1.21172 1.20021 1.22455 0.75072 0.88246 0.83039 1.90704 1.49905 1.14402 1.82061 1.46763 1.59830 1.09601 1.12551 1.22093 1.02393 0.80344 0.96933 1.21132 1.01453 0.94618 0.94854 1.19959 1.03982 0.94848 0.94181 1.20332 0.99042 0.96531 0.95132 1.20720 1.02688 0.92252 0.99242 1.20888 1.01460 1.00970 0.92003 1.17386 1.04028 0.84337 0.88646 1.91706 1.92624 1.61344 1.63160 1.18749 0.96923 0.92499 0.88861 0.94414 0.88574 0.97045 0.92701 0.89781 0.89453 0.89096 0.89199 0.85553 0.85166 0.84743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.92 37.16 0.33 -2.75 16 2 C 0.04 1.05 2.24 -92.93 -0.21 0.84 16 3 H 0.05 1.18 6.91 -51.93 -0.36 0.82 16 4 C -0.50 -14.38 8.32 -34.44 -0.29 -14.67 16 5 H 0.07 2.01 7.25 -52.49 -0.38 1.63 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.76 11.34 55.43 0.63 -24.13 16 8 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.52 12.63 6.78 -10.99 -0.07 12.55 16 13 O -0.50 -13.67 12.65 5.55 0.07 -13.60 16 14 N -0.56 -11.22 3.13 -112.82 -0.35 -11.57 16 15 C 0.10 1.56 6.37 -3.63 -0.02 1.54 16 16 C -0.08 -0.95 6.93 -27.24 -0.19 -1.14 16 17 C -0.13 -1.77 6.23 -104.28 -0.65 -2.42 16 18 C -0.09 -1.05 10.03 -39.59 -0.40 -1.45 16 19 C -0.13 -1.48 10.06 -39.57 -0.40 -1.88 16 20 C -0.13 -1.89 10.00 -39.64 -0.40 -2.29 16 21 C 0.08 1.47 7.27 -39.07 -0.28 1.19 16 22 F -0.11 -2.48 13.39 2.25 0.03 -2.45 16 23 C 0.13 2.35 6.63 -83.47 -0.55 1.80 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.10 2.45 6.14 -51.93 -0.32 2.13 16 26 H 0.01 0.22 8.13 -51.93 -0.42 -0.20 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.08 1.17 8.13 -51.93 -0.42 0.75 16 29 H 0.09 1.27 7.66 -51.93 -0.40 0.87 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 33 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 287.55 15.07 4.33 4.33 Total: -1.00 -32.63 287.55 -7.50 -40.13 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -3.97 Total: -2.42 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -3.22 Total: -7.04 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.28 Total: -35.70 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.07 Total: -13.60 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.03 Total: -2.45 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.63 -7.50 -40.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597409734.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.331 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds