Wall clock time and date at job start Mon Mar 30 2020 06:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47061 * 2 1 4 4 C 1.50697 * 109.47009 * 120.00101 * 2 1 3 5 5 H 1.08001 * 120.00593 * 120.00051 * 4 2 1 6 6 C 1.37883 * 119.99840 * 299.99894 * 4 2 1 7 7 N 1.31513 * 119.99978 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99814 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47231 * 59.99985 * 8 6 4 10 10 H 1.48503 * 109.46902 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47338 * 299.99889 * 8 6 4 12 12 C 1.50701 * 109.47170 * 239.99888 * 2 1 3 13 13 O 1.21291 * 119.99792 * 274.63328 * 12 2 1 14 14 N 1.34775 * 119.99912 * 94.36142 * 12 2 1 15 15 C 1.46542 * 124.99079 * 354.63554 * 14 12 2 16 16 C 1.53743 * 105.18994 * 179.91882 * 15 14 12 17 17 C 1.51219 * 104.60022 * 0.33041 * 16 15 14 18 18 C 1.38243 * 130.94926 * 179.74917 * 17 16 15 19 19 C 1.38199 * 120.20353 * 180.02562 * 18 17 16 20 20 C 1.38298 * 119.84152 * 0.02562 * 19 18 17 21 21 C 1.38021 * 120.19674 * 359.97438 * 20 19 18 22 22 F 1.35097 * 119.88039 * 179.97438 * 21 20 19 23 23 C 1.38478 * 108.57578 * 359.78934 * 17 16 15 24 24 H 1.08997 * 109.47490 * 182.50646 * 1 2 3 25 25 H 1.08997 * 109.47292 * 302.50512 * 1 2 3 26 26 H 1.08999 * 109.47068 * 62.50546 * 1 2 3 27 27 H 0.97005 * 119.99515 * 179.97438 * 7 6 4 28 28 H 1.08996 * 110.29920 * 298.96560 * 15 14 12 29 29 H 1.09002 * 110.30116 * 61.10915 * 15 14 12 30 30 H 1.09001 * 110.59104 * 241.46140 * 16 15 14 31 31 H 1.09004 * 110.32913 * 119.07088 * 16 15 14 32 32 H 1.08006 * 119.90044 * 0.06780 * 18 17 16 33 33 H 1.07999 * 120.08287 * 179.97438 * 19 18 17 34 34 H 1.08004 * 119.90263 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2393 2.4827 7 7 0.9426 0.8297 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.8074 -1.1190 4.0078 10 1 1.8267 -0.4199 5.2205 11 1 1.8279 -2.5198 4.0082 12 6 2.0323 -0.7104 -1.2305 13 8 2.1544 -1.9172 -1.2266 14 7 2.3406 -0.0054 -2.3369 15 6 2.1251 1.4345 -2.5031 16 6 2.6348 1.7576 -3.9171 17 6 3.1082 0.4297 -4.4643 18 6 3.6602 0.0989 -5.6878 19 6 4.0185 -1.2081 -5.9583 20 6 3.8232 -2.1873 -5.0014 21 6 3.2725 -1.8626 -3.7782 22 9 3.0841 -2.8243 -2.8483 23 6 2.9080 -0.5421 -3.4984 24 1 -0.3634 -1.0266 0.0449 25 1 -0.3634 0.5522 0.8666 26 1 -0.3633 0.4744 -0.9116 27 1 0.7080 1.1608 3.4844 28 1 1.0643 1.6704 -2.4185 29 1 2.6974 1.9907 -1.7606 30 1 3.4611 2.4672 -3.8740 31 1 1.8254 2.1545 -4.5299 32 1 3.8126 0.8644 -6.4344 33 1 4.4492 -1.4644 -6.9150 34 1 4.1025 -3.2092 -5.2119 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597409734.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:08 Heat of formation + Delta-G solvation = -68.523522 kcal Electronic energy + Delta-G solvation = -19954.921543 eV Core-core repulsion = 16766.409113 eV Total energy + Delta-G solvation = -3188.512431 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.57034 -41.94337 -39.74855 -37.22648 -35.89895 -33.17648 -32.57069 -30.54669 -29.94889 -27.37703 -25.56839 -24.15167 -23.20805 -22.55943 -20.44511 -18.68683 -18.35523 -17.60414 -17.38907 -17.27167 -16.78993 -16.13056 -15.99479 -15.68105 -15.18002 -15.00138 -14.60037 -14.42000 -13.86421 -13.57415 -13.29787 -13.10236 -12.94528 -12.86865 -12.73718 -12.61133 -12.54718 -12.34480 -12.16328 -12.10021 -11.27717 -11.15468 -10.69710 -10.42135 -9.60725 -8.75322 -8.23838 -6.35587 0.18049 0.21138 1.36473 1.38753 1.46729 1.76206 1.86897 2.39030 2.68451 3.05392 3.33992 3.46314 3.62879 3.95001 4.04532 4.19243 4.22754 4.38530 4.47483 4.61250 4.70277 4.82276 4.90367 4.96203 5.04292 5.08374 5.12383 5.30031 5.40288 5.43620 5.48838 5.61640 5.80535 6.00407 6.07587 6.38034 6.67000 7.20050 7.33224 8.82199 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.030258 B = 0.005999 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.162667 B = 4666.709993 C = 5249.670377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.041 3.959 3 H 0.048 0.952 4 C -0.536 4.536 5 H 0.036 0.964 6 C 0.028 3.972 7 N -0.904 5.904 8 Si 0.957 3.043 9 H -0.274 1.274 10 H -0.267 1.267 11 H -0.280 1.280 12 C 0.514 3.486 13 O -0.549 6.549 14 N -0.568 5.568 15 C 0.090 3.910 16 C -0.071 4.071 17 C -0.114 4.114 18 C -0.078 4.078 19 C -0.107 4.107 20 C -0.137 4.137 21 C 0.026 3.974 22 F -0.148 7.148 23 C 0.074 3.926 24 H 0.016 0.984 25 H 0.081 0.919 26 H 0.042 0.958 27 H 0.269 0.731 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.177 0.823 33 H 0.178 0.822 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.373 5.593 -18.544 19.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.020 3.980 3 H 0.066 0.934 4 C -0.574 4.574 5 H 0.055 0.945 6 C -0.173 4.173 7 N -0.542 5.542 8 Si 0.782 3.218 9 H -0.199 1.199 10 H -0.191 1.191 11 H -0.206 1.206 12 C 0.306 3.694 13 O -0.424 6.424 14 N -0.292 5.292 15 C -0.031 4.031 16 C -0.107 4.107 17 C -0.118 4.118 18 C -0.097 4.097 19 C -0.125 4.125 20 C -0.156 4.156 21 C 0.004 3.996 22 F -0.127 7.127 23 C -0.022 4.022 24 H 0.036 0.964 25 H 0.100 0.900 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.194 0.806 33 H 0.195 0.805 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.264 5.035 -18.163 19.324 hybrid contribution 0.071 -1.188 1.684 2.062 sum 4.335 3.847 -16.479 17.469 Atomic orbital electron populations 1.21514 0.95030 0.99478 1.01320 1.18764 0.95067 0.96072 0.88090 0.93425 1.21062 1.32651 1.12515 0.91214 0.94520 1.25544 0.94890 0.95646 1.01199 1.69910 1.36391 1.23141 1.24783 0.85632 0.78774 0.78599 0.78771 1.19927 1.19140 1.20611 1.22098 0.75326 0.87731 0.84229 1.90672 1.52372 1.16158 1.83242 1.46523 1.59295 1.11300 1.12080 1.22474 1.03217 0.77627 0.99776 1.21239 1.03449 0.93775 0.92263 1.20458 1.02623 0.94739 0.93948 1.20941 0.96387 0.97693 0.94640 1.21343 0.99931 0.91491 0.99784 1.21226 1.00708 1.02855 0.90853 1.18200 1.07030 0.84382 0.89944 1.91596 1.93373 1.62747 1.64977 1.19203 0.99805 0.93641 0.89584 0.96442 0.89991 0.93871 0.92140 0.89079 0.89655 0.86077 0.85769 0.80580 0.80507 0.83263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 8.92 71.98 0.64 -5.07 16 2 C 0.04 2.19 2.24 -12.29 -0.03 2.16 16 3 H 0.05 2.47 6.91 -2.39 -0.02 2.45 16 4 C -0.54 -32.17 8.32 25.60 0.21 -31.96 16 5 H 0.04 2.37 7.25 -2.91 -0.02 2.35 16 6 C 0.03 1.56 5.30 84.66 0.45 2.01 16 7 N -0.90 -50.63 11.34 21.45 0.24 -50.38 16 8 Si 0.96 45.51 29.54 68.60 2.03 47.53 16 9 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 11 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 12 C 0.51 26.53 6.78 87.66 0.59 27.12 16 13 O -0.55 -32.57 12.65 -3.06 -0.04 -32.61 16 14 N -0.57 -23.27 3.13 -629.24 -1.97 -25.24 16 15 C 0.09 2.59 6.37 86.62 0.55 3.14 16 16 C -0.07 -1.33 6.93 30.26 0.21 -1.12 16 17 C -0.11 -2.83 6.23 -19.64 -0.12 -2.95 16 18 C -0.08 -1.36 10.03 22.26 0.22 -1.13 16 19 C -0.11 -1.92 10.06 22.27 0.22 -1.70 16 20 C -0.14 -3.70 10.00 22.23 0.22 -3.48 16 21 C 0.03 1.03 7.27 22.60 0.16 1.19 16 22 F -0.15 -7.28 13.39 44.97 0.60 -6.68 16 23 C 0.07 2.73 6.63 38.28 0.25 2.98 16 24 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 25 H 0.08 4.27 6.14 -2.39 -0.01 4.26 16 26 H 0.04 1.79 8.13 -2.39 -0.02 1.77 16 27 H 0.27 14.17 8.31 -92.70 -0.77 13.40 16 28 H 0.09 2.43 8.13 -2.39 -0.02 2.41 16 29 H 0.09 2.43 7.66 -2.39 -0.02 2.42 16 30 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 33 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 34 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -78.37 287.55 5.57 -72.80 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: 1.11 Total: 3.38 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 3.60 Total: -8.81 kcal Atomic # 7 Polarization: -73.90 SS G_CDS: -1.73 Total: -75.62 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -0.04 Total: -32.61 kcal Atomic # 9 Polarization: -7.28 SS G_CDS: 0.60 Total: -6.68 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -78.37 5.57 -72.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597409734.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.278 kcal (2) G-P(sol) polarization free energy of solvation -78.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds