Wall clock time and date at job start Mon Mar 30 2020 07:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38220 * 119.95528 * 2 1 4 4 C 1.38126 * 120.12562 * 180.02562 * 3 2 1 5 5 C 1.50692 * 119.97909 * 179.97438 * 4 3 2 6 6 C 1.38931 * 120.03819 * 0.02562 * 4 3 2 7 7 N 1.39915 * 120.04269 * 179.97438 * 6 4 3 8 8 C 1.34773 * 120.00425 * 215.02555 * 7 6 4 9 9 O 1.21292 * 119.99732 * 355.74115 * 8 7 6 10 10 C 1.50693 * 120.00604 * 175.47563 * 8 7 6 11 11 H 1.09009 * 109.47304 * 59.99145 * 10 8 7 12 12 C 1.53003 * 109.47042 * 299.99814 * 10 8 7 13 13 C 1.50698 * 109.47477 * 179.97438 * 10 8 7 14 14 H 1.07996 * 119.99979 * 359.97438 * 13 10 8 15 15 C 1.37879 * 120.00268 * 180.02562 * 13 10 8 16 16 N 1.31521 * 119.99887 * 359.97438 * 15 13 10 17 17 Si 1.86795 * 120.00113 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.47145 * 59.99978 * 17 15 13 19 19 H 1.48503 * 109.46970 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47410 * 299.99638 * 17 15 13 21 21 C 1.38759 * 119.91891 * 0.22426 * 6 4 3 22 22 C 1.38635 * 119.86926 * 359.51711 * 21 6 4 23 23 O 1.35902 * 120.01611 * 180.22716 * 22 21 6 24 24 H 1.09001 * 109.46925 * 90.00075 * 1 2 3 25 25 H 1.08998 * 109.46683 * 209.99813 * 1 2 3 26 26 H 1.08994 * 109.47588 * 329.99563 * 1 2 3 27 27 H 1.08001 * 119.93860 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.47326 * 270.02375 * 5 4 3 29 29 H 1.09000 * 109.47279 * 30.02270 * 5 4 3 30 30 H 1.09000 * 109.47208 * 150.02389 * 5 4 3 31 31 H 0.97000 * 119.99793 * 35.01731 * 7 6 4 32 32 H 1.09003 * 109.47174 * 59.99544 * 12 10 8 33 33 H 1.09000 * 109.47498 * 180.02562 * 12 10 8 34 34 H 1.09009 * 109.46525 * 299.99808 * 12 10 8 35 35 H 0.96996 * 120.00153 * 179.97438 * 16 15 13 36 36 H 1.07988 * 120.06613 * 179.75164 * 21 6 4 37 37 H 0.96694 * 114.00095 * 270.28067 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1976 0.0000 4 6 3.5784 1.2017 -0.0005 5 6 4.3275 2.5092 -0.0011 6 6 4.2774 0.0010 -0.0016 7 7 5.6766 0.0051 -0.0027 8 6 6.3528 -0.9484 -0.6735 9 8 5.7510 -1.8537 -1.2116 10 6 7.8559 -0.8867 -0.7601 11 1 8.2795 -0.9203 0.2437 12 6 8.2741 0.4152 -1.4466 13 6 8.3619 -2.0608 -1.5579 14 1 7.6647 -2.7800 -1.9615 15 6 9.7150 -2.2173 -1.7717 16 7 10.5641 -1.3417 -1.2798 17 14 10.3421 -3.6731 -2.7600 18 1 9.7656 -3.6280 -4.1278 19 1 11.8234 -3.6121 -2.8454 20 1 9.9359 -4.9361 -2.0930 21 6 3.5863 -1.2022 -0.0069 22 6 2.2000 -1.2022 -0.0009 23 8 1.5201 -2.3789 -0.0013 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3632 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6554 2.1319 0.0004 28 1 4.5074 2.8245 -1.0289 29 1 3.7363 3.2669 0.5131 30 1 5.2807 2.3821 0.5120 31 1 6.1599 0.6943 0.4793 32 1 7.9082 1.2642 -0.8693 33 1 9.3614 0.4597 -1.5097 34 1 7.8506 0.4488 -2.4505 35 1 11.5160 -1.4520 -1.4299 36 1 4.1273 -2.1368 -0.0118 37 1 1.3233 -2.7191 -0.8848 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597507415.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:24 Heat of formation + Delta-G solvation = -68.236302 kcal Electronic energy + Delta-G solvation = -19704.852294 eV Core-core repulsion = 16639.812623 eV Total energy + Delta-G solvation = -3065.039671 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.36039 -38.74091 -36.83550 -34.30966 -33.86421 -31.99617 -31.31617 -30.16832 -26.93526 -25.78606 -25.19587 -23.08223 -22.13093 -20.50744 -19.52646 -18.43314 -16.61629 -16.41626 -15.82663 -15.36737 -14.89356 -14.71866 -14.30823 -14.10853 -13.64556 -13.27267 -13.10856 -13.07524 -12.80267 -12.52232 -12.30320 -11.75740 -11.64300 -11.38264 -11.28986 -11.04621 -10.83317 -10.74602 -10.45869 -10.34929 -10.02537 -9.68735 -9.06487 -8.74006 -8.43172 -8.34137 -7.64302 -6.08754 -4.12584 1.33981 1.52161 3.33402 3.36146 3.40577 3.40857 3.62606 3.91613 4.39482 4.45249 4.83841 5.03826 5.09057 5.24786 5.29476 5.43774 5.56880 5.63067 5.69415 5.83392 5.89485 5.96376 6.14583 6.19336 6.38797 6.52780 6.63045 6.65385 6.73355 6.75405 6.85408 7.23814 7.38028 7.67367 7.79756 7.88429 8.02825 8.28745 8.95004 9.01105 9.53169 10.98864 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029791 B = 0.004920 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.639978 B = 5690.263077 C = 6480.704711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.138 4.138 3 C -0.090 4.090 4 C -0.127 4.127 5 C -0.107 4.107 6 C 0.173 3.827 7 N -0.686 5.686 8 C 0.519 3.481 9 O -0.524 6.524 10 C 0.032 3.968 11 H 0.056 0.944 12 C -0.133 4.133 13 C -0.504 4.504 14 H 0.074 0.926 15 C 0.060 3.940 16 N -0.896 5.896 17 Si 0.902 3.098 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.145 4.145 22 C 0.114 3.886 23 O -0.497 6.497 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.125 0.875 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.407 0.593 32 H 0.013 0.987 33 H 0.095 0.905 34 H 0.032 0.968 35 H 0.262 0.738 36 H 0.148 0.852 37 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.672 7.458 3.113 16.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.139 4.139 3 C -0.109 4.109 4 C -0.130 4.130 5 C -0.164 4.164 6 C 0.077 3.923 7 N -0.333 5.333 8 C 0.310 3.690 9 O -0.398 6.398 10 C 0.011 3.989 11 H 0.074 0.926 12 C -0.191 4.191 13 C -0.543 4.543 14 H 0.092 0.908 15 C -0.141 4.141 16 N -0.535 5.535 17 Si 0.730 3.270 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.165 4.165 22 C 0.069 3.931 23 O -0.307 6.307 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.143 0.857 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.244 0.756 32 H 0.032 0.968 33 H 0.114 0.886 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.165 0.835 37 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -14.765 6.861 3.307 16.614 hybrid contribution 0.639 -0.464 -0.800 1.124 sum -14.126 6.397 2.507 15.709 Atomic orbital electron populations 1.20593 0.91071 1.02671 1.01804 1.20057 0.96369 0.92490 1.04994 1.20512 0.92584 0.97011 1.00804 1.19717 0.93839 0.94130 1.05286 1.20649 0.99602 0.93642 1.02468 1.17530 0.83999 0.92565 0.98157 1.44130 1.03500 1.32566 1.53059 1.22309 0.92458 0.79297 0.74925 1.90524 1.70568 1.33739 1.44948 1.18906 0.83507 0.97205 0.99329 0.92650 1.21762 1.05349 0.93922 0.98067 1.21066 0.92097 1.08038 1.33061 0.90768 1.24942 0.96666 0.96660 0.95843 1.69853 1.02535 1.35440 1.45659 0.86480 0.77212 0.82702 0.80606 1.20174 1.21315 1.20137 1.21594 0.93261 0.99176 1.02511 1.18083 0.89278 0.84712 1.01029 1.84748 1.76136 1.36422 1.33371 0.91840 0.91223 0.91924 0.85745 0.91095 0.91549 0.91850 0.75631 0.96843 0.88602 0.94871 0.92797 0.83476 0.75716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 9.79 36.00 0.35 -0.71 16 2 C -0.14 -1.83 5.90 -104.44 -0.62 -2.45 16 3 C -0.09 -1.15 9.34 -39.63 -0.37 -1.52 16 4 C -0.13 -1.79 5.90 -104.41 -0.62 -2.40 16 5 C -0.11 -1.19 9.76 36.00 0.35 -0.84 16 6 C 0.17 2.97 6.28 -83.72 -0.53 2.45 16 7 N -0.69 -12.27 4.88 -9.88 -0.05 -12.32 16 8 C 0.52 11.64 6.99 -10.99 -0.08 11.57 16 9 O -0.52 -13.24 12.88 5.55 0.07 -13.17 16 10 C 0.03 0.77 2.63 -92.93 -0.24 0.52 16 11 H 0.06 1.38 8.14 -51.92 -0.42 0.96 16 12 C -0.13 -2.97 8.87 37.16 0.33 -2.64 16 13 C -0.50 -14.04 8.37 -34.44 -0.29 -14.33 16 14 H 0.07 2.18 6.75 -52.49 -0.35 1.82 16 15 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 16 N -0.90 -24.70 11.32 55.43 0.63 -24.07 16 17 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C -0.14 -2.61 8.63 -39.24 -0.34 -2.95 16 22 C 0.11 1.77 6.67 -39.24 -0.26 1.50 16 23 O -0.50 -6.89 12.54 -19.43 -0.24 -7.13 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.72 7.53 -51.93 -0.39 0.33 16 26 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 30 H 0.06 0.68 6.51 -51.93 -0.34 0.34 16 31 H 0.41 6.15 6.77 -40.82 -0.28 5.87 16 32 H 0.01 0.24 7.67 -51.93 -0.40 -0.16 16 33 H 0.10 2.36 6.07 -51.93 -0.32 2.04 16 34 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 35 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.15 3.03 6.21 -52.49 -0.33 2.71 16 37 H 0.39 3.72 9.06 45.56 0.41 4.14 16 LS Contribution 308.62 15.07 4.65 4.65 Total: -1.00 -31.45 308.62 -6.44 -37.89 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -4.07 Total: 7.84 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -2.40 Total: -10.25 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.58 Total: -36.39 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.17 Total: -20.30 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.45 -6.44 -37.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507415.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.347 kcal (2) G-P(sol) polarization free energy of solvation -31.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds