Wall clock time and date at job start Mon Mar 30 2020 07:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38216 * 119.95638 * 2 1 4 4 C 1.38118 * 120.12290 * 179.76679 * 3 2 1 5 5 C 1.50701 * 119.97754 * 180.23283 * 4 3 2 6 6 C 1.38934 * 120.04404 * 0.46476 * 4 3 2 7 7 N 1.39915 * 120.04413 * 179.79219 * 6 4 3 8 8 C 1.34775 * 119.99611 * 154.87927 * 7 6 4 9 9 O 1.21283 * 120.00222 * 354.47753 * 8 7 6 10 10 C 1.50704 * 119.99771 * 174.48028 * 8 7 6 11 11 H 1.08998 * 109.46939 * 300.00033 * 10 8 7 12 12 C 1.53009 * 109.46807 * 59.99718 * 10 8 7 13 13 C 1.50695 * 109.47136 * 179.97438 * 10 8 7 14 14 H 1.08001 * 120.00172 * 359.97438 * 13 10 8 15 15 C 1.37875 * 120.00134 * 180.02562 * 13 10 8 16 16 N 1.31522 * 119.99752 * 359.97438 * 15 13 10 17 17 Si 1.86795 * 120.00396 * 180.02562 * 15 13 10 18 18 H 1.48505 * 109.47131 * 59.99544 * 17 15 13 19 19 H 1.48496 * 109.47562 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47106 * 299.99658 * 17 15 13 21 21 C 1.38755 * 119.90941 * 359.51342 * 6 4 3 22 22 C 1.38631 * 119.87850 * 0.25239 * 21 6 4 23 23 O 1.35895 * 120.01921 * 179.97438 * 22 21 6 24 24 H 1.09005 * 109.47232 * 270.02087 * 1 2 3 25 25 H 1.09005 * 109.46983 * 30.02325 * 1 2 3 26 26 H 1.09000 * 109.47305 * 150.02225 * 1 2 3 27 27 H 1.07999 * 119.93896 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.47280 * 270.22670 * 5 4 3 29 29 H 1.08998 * 109.47763 * 30.23214 * 5 4 3 30 30 H 1.09001 * 109.47173 * 150.22985 * 5 4 3 31 31 H 0.96996 * 119.99693 * 334.87703 * 7 6 4 32 32 H 1.08998 * 109.47113 * 60.00423 * 12 10 8 33 33 H 1.08998 * 109.47183 * 300.00047 * 12 10 8 34 34 H 1.09003 * 109.46845 * 180.02562 * 12 10 8 35 35 H 0.96999 * 119.99734 * 180.02562 * 16 15 13 36 36 H 1.08002 * 120.06125 * 180.23262 * 21 6 4 37 37 H 0.96696 * 113.99942 * 90.00601 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1975 0.0000 4 6 3.5783 1.2015 0.0049 5 6 4.3275 2.5091 0.0102 6 6 4.2775 0.0009 0.0000 7 7 5.6766 0.0050 0.0005 8 6 6.3533 -1.0520 0.4918 9 8 5.7535 -1.9618 1.0241 10 6 7.8553 -1.1032 0.3798 11 1 8.1425 -1.0720 -0.6712 12 6 8.4624 0.0965 1.1102 13 6 8.3622 -2.3786 1.0020 14 1 7.6665 -3.0817 1.4356 15 6 9.7144 -2.6476 1.0187 16 7 10.5618 -1.7912 0.4911 17 14 10.3428 -4.2289 1.7892 18 1 9.7541 -5.3932 1.0799 19 1 11.8228 -4.2793 1.6790 20 1 9.9509 -4.2716 3.2210 21 6 3.5862 -1.2022 0.0005 22 6 2.1999 -1.2022 0.0005 23 8 1.5201 -2.3789 0.0005 24 1 -0.3634 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6555 2.1318 0.0004 28 1 4.5082 2.8285 -1.0162 29 1 3.7360 3.2648 0.5270 30 1 5.2804 2.3799 0.5235 31 1 6.1594 0.7685 -0.3527 32 1 8.1752 0.0653 2.1612 33 1 8.0957 1.0192 0.6605 34 1 9.5487 0.0597 1.0288 35 1 11.5130 -1.9806 0.5025 36 1 4.1272 -2.1370 0.0005 37 1 1.3232 -2.7194 0.8838 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597507416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:26 Heat of formation + Delta-G solvation = -67.373615 kcal Electronic energy + Delta-G solvation = -19696.932684 eV Core-core repulsion = 16631.930422 eV Total energy + Delta-G solvation = -3065.002262 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.39231 -38.75801 -36.83827 -34.31878 -33.89604 -31.99780 -31.31971 -30.17024 -26.92728 -25.78619 -25.20862 -23.10915 -22.14477 -20.51134 -19.49516 -18.45333 -16.62971 -16.44573 -15.80365 -15.30302 -14.91410 -14.71659 -14.30488 -14.11643 -13.67238 -13.28433 -13.19759 -13.05545 -12.78682 -12.55858 -12.29004 -11.73331 -11.65498 -11.39412 -11.28020 -11.05530 -10.84582 -10.75882 -10.44234 -10.36843 -10.02926 -9.80708 -9.07956 -8.74599 -8.43521 -8.30865 -7.57665 -6.09532 -4.13523 1.35845 1.54139 3.32928 3.35848 3.36572 3.40579 3.63811 3.92637 4.39815 4.45630 4.84152 5.05520 5.10345 5.23998 5.31218 5.43619 5.57869 5.61869 5.69776 5.80169 5.88905 5.99072 6.12347 6.21031 6.39431 6.50154 6.62763 6.67302 6.71124 6.75732 6.83551 7.23162 7.36980 7.66644 7.81657 7.87330 8.01137 8.26935 8.93300 8.97732 9.52313 10.98062 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029571 B = 0.004930 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.634198 B = 5678.297391 C = 6510.266925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.143 4.143 3 C -0.087 4.087 4 C -0.135 4.135 5 C -0.112 4.112 6 C 0.178 3.822 7 N -0.682 5.682 8 C 0.518 3.482 9 O -0.520 6.520 10 C 0.031 3.969 11 H 0.058 0.942 12 C -0.135 4.135 13 C -0.505 4.505 14 H 0.074 0.926 15 C 0.060 3.940 16 N -0.896 5.896 17 Si 0.902 3.098 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.156 4.156 22 C 0.118 3.882 23 O -0.497 6.497 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.124 0.876 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.408 0.592 32 H 0.033 0.967 33 H 0.012 0.988 34 H 0.096 0.904 35 H 0.262 0.738 36 H 0.155 0.845 37 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.452 8.336 -1.328 16.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.145 4.145 3 C -0.105 4.105 4 C -0.138 4.138 5 C -0.168 4.168 6 C 0.082 3.918 7 N -0.327 5.327 8 C 0.309 3.691 9 O -0.394 6.394 10 C 0.010 3.990 11 H 0.075 0.925 12 C -0.193 4.193 13 C -0.543 4.543 14 H 0.093 0.907 15 C -0.141 4.141 16 N -0.535 5.535 17 Si 0.730 3.270 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.177 4.177 22 C 0.073 3.927 23 O -0.306 6.306 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.142 0.858 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.245 0.755 32 H 0.052 0.948 33 H 0.031 0.969 34 H 0.115 0.885 35 H 0.072 0.928 36 H 0.172 0.828 37 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -14.533 7.704 -1.582 16.524 hybrid contribution 0.627 -0.470 0.725 1.067 sum -13.906 7.234 -0.857 15.698 Atomic orbital electron populations 1.20584 0.91116 1.02629 1.01727 1.20041 0.96341 0.92505 1.05613 1.20487 0.92541 0.96977 1.00513 1.19617 0.93865 0.93937 1.06392 1.20690 1.00175 0.93814 1.02158 1.17589 0.83872 0.92827 0.97562 1.44175 1.03614 1.22505 1.62418 1.22329 0.92470 0.79551 0.74712 1.90496 1.70599 1.36991 1.41329 1.18928 0.83252 0.97652 0.99184 0.92484 1.21783 1.05429 0.93771 0.98284 1.21061 0.92244 1.03142 1.37870 0.90741 1.24942 0.96674 0.97170 0.95315 1.69855 1.02693 1.35568 1.45353 0.86475 0.77228 0.83375 0.79898 1.20128 1.21312 1.20158 1.21715 0.93342 0.99441 1.03208 1.18082 0.89284 0.84676 1.00665 1.84748 1.76118 1.36443 1.33331 0.91922 0.91977 0.91263 0.85796 0.91304 0.91380 0.91519 0.75522 0.94778 0.96926 0.88519 0.92782 0.82803 0.75729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 9.79 36.01 0.35 -0.71 16 2 C -0.14 -1.93 5.90 -104.44 -0.62 -2.54 16 3 C -0.09 -1.10 9.34 -39.63 -0.37 -1.47 16 4 C -0.14 -1.90 5.90 -104.41 -0.62 -2.51 16 5 C -0.11 -1.22 9.44 36.01 0.34 -0.88 16 6 C 0.18 3.07 6.41 -83.72 -0.54 2.53 16 7 N -0.68 -12.23 4.89 -9.88 -0.05 -12.28 16 8 C 0.52 11.59 6.95 -10.98 -0.08 11.52 16 9 O -0.52 -13.06 12.62 5.55 0.07 -12.99 16 10 C 0.03 0.75 2.65 -92.92 -0.25 0.50 16 11 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 12 C -0.13 -2.99 8.86 37.16 0.33 -2.66 16 13 C -0.50 -14.01 8.37 -34.44 -0.29 -14.29 16 14 H 0.07 2.17 6.75 -52.49 -0.35 1.82 16 15 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 16 N -0.90 -24.64 11.32 55.43 0.63 -24.02 16 17 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.16 -2.86 8.65 -39.25 -0.34 -3.20 16 22 C 0.12 1.85 6.67 -39.24 -0.26 1.59 16 23 O -0.50 -7.00 12.54 -19.41 -0.24 -7.24 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 26 H 0.07 0.73 7.52 -51.93 -0.39 0.33 16 27 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 30 H 0.07 0.76 6.99 -51.93 -0.36 0.40 16 31 H 0.41 6.19 6.68 -40.82 -0.27 5.92 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.01 0.22 7.45 -51.93 -0.39 -0.17 16 34 H 0.10 2.37 6.07 -51.93 -0.32 2.05 16 35 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 36 H 0.15 3.24 5.79 -52.49 -0.30 2.94 16 37 H 0.39 3.77 9.06 45.56 0.41 4.18 16 LS Contribution 307.89 15.07 4.64 4.64 Total: -1.00 -31.28 307.89 -6.46 -37.74 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -4.06 Total: 8.22 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -2.42 Total: -10.59 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.58 Total: -36.30 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.17 Total: -20.23 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.28 -6.46 -37.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.634 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds