Wall clock time and date at job start Mon Mar 30 2020 07:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38216 * 119.95638 * 2 1 4 4 C 1.38118 * 120.12290 * 179.76679 * 3 2 1 5 5 C 1.50701 * 119.97754 * 180.23283 * 4 3 2 6 6 C 1.38934 * 120.04404 * 0.46476 * 4 3 2 7 7 N 1.39915 * 120.04413 * 179.79219 * 6 4 3 8 8 C 1.34775 * 119.99611 * 154.87927 * 7 6 4 9 9 O 1.21283 * 120.00222 * 354.47753 * 8 7 6 10 10 C 1.50704 * 119.99771 * 174.48028 * 8 7 6 11 11 H 1.08998 * 109.46939 * 300.00033 * 10 8 7 12 12 C 1.53009 * 109.46807 * 59.99718 * 10 8 7 13 13 C 1.50695 * 109.47136 * 179.97438 * 10 8 7 14 14 H 1.08001 * 120.00172 * 359.97438 * 13 10 8 15 15 C 1.37875 * 120.00134 * 180.02562 * 13 10 8 16 16 N 1.31522 * 119.99752 * 359.97438 * 15 13 10 17 17 Si 1.86795 * 120.00396 * 180.02562 * 15 13 10 18 18 H 1.48505 * 109.47131 * 59.99544 * 17 15 13 19 19 H 1.48496 * 109.47562 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47106 * 299.99658 * 17 15 13 21 21 C 1.38755 * 119.90941 * 359.51342 * 6 4 3 22 22 C 1.38631 * 119.87850 * 0.25239 * 21 6 4 23 23 O 1.35895 * 120.01921 * 179.97438 * 22 21 6 24 24 H 1.09005 * 109.47232 * 270.02087 * 1 2 3 25 25 H 1.09005 * 109.46983 * 30.02325 * 1 2 3 26 26 H 1.09000 * 109.47305 * 150.02225 * 1 2 3 27 27 H 1.07999 * 119.93896 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.47280 * 270.22670 * 5 4 3 29 29 H 1.08998 * 109.47763 * 30.23214 * 5 4 3 30 30 H 1.09001 * 109.47173 * 150.22985 * 5 4 3 31 31 H 0.96996 * 119.99693 * 334.87703 * 7 6 4 32 32 H 1.08998 * 109.47113 * 60.00423 * 12 10 8 33 33 H 1.08998 * 109.47183 * 300.00047 * 12 10 8 34 34 H 1.09003 * 109.46845 * 180.02562 * 12 10 8 35 35 H 0.96999 * 119.99734 * 180.02562 * 16 15 13 36 36 H 1.08002 * 120.06125 * 180.23262 * 21 6 4 37 37 H 0.96696 * 113.99942 * 90.00601 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1975 0.0000 4 6 3.5783 1.2015 0.0049 5 6 4.3275 2.5091 0.0102 6 6 4.2775 0.0009 0.0000 7 7 5.6766 0.0050 0.0005 8 6 6.3533 -1.0520 0.4918 9 8 5.7535 -1.9618 1.0241 10 6 7.8553 -1.1032 0.3798 11 1 8.1425 -1.0720 -0.6712 12 6 8.4624 0.0965 1.1102 13 6 8.3622 -2.3786 1.0020 14 1 7.6665 -3.0817 1.4356 15 6 9.7144 -2.6476 1.0187 16 7 10.5618 -1.7912 0.4911 17 14 10.3428 -4.2289 1.7892 18 1 9.7541 -5.3932 1.0799 19 1 11.8228 -4.2793 1.6790 20 1 9.9509 -4.2716 3.2210 21 6 3.5862 -1.2022 0.0005 22 6 2.1999 -1.2022 0.0005 23 8 1.5201 -2.3789 0.0005 24 1 -0.3634 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6555 2.1318 0.0004 28 1 4.5082 2.8285 -1.0162 29 1 3.7360 3.2648 0.5270 30 1 5.2804 2.3799 0.5235 31 1 6.1594 0.7685 -0.3527 32 1 8.1752 0.0653 2.1612 33 1 8.0957 1.0192 0.6605 34 1 9.5487 0.0597 1.0288 35 1 11.5130 -1.9806 0.5025 36 1 4.1272 -2.1370 0.0005 37 1 1.3232 -2.7194 0.8838 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597507416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:25 Heat of formation + Delta-G solvation = -88.686361 kcal Electronic energy + Delta-G solvation = -19697.856874 eV Core-core repulsion = 16631.930422 eV Total energy + Delta-G solvation = -3065.926452 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.75678 -40.18178 -38.06017 -35.88673 -35.68135 -33.22870 -32.74284 -31.75653 -27.88213 -27.29170 -26.90721 -24.68946 -23.53135 -21.64869 -21.11886 -19.73678 -18.37139 -18.07909 -17.27540 -16.78429 -16.44536 -16.16968 -15.78438 -15.50928 -14.98438 -14.63710 -14.55152 -14.26915 -13.95992 -13.67146 -13.50685 -13.13469 -12.99688 -12.83056 -12.71580 -12.62274 -12.48720 -12.26453 -12.25067 -12.03530 -11.64052 -11.16056 -11.08714 -10.61839 -10.31569 -9.54101 -8.82116 -8.18661 -6.29434 0.20411 0.34820 1.40125 1.41157 1.49733 1.75775 2.16254 2.44534 2.69005 3.11375 3.32353 3.85331 4.01251 4.05385 4.16932 4.39181 4.52696 4.68925 4.72119 4.83287 4.85753 4.86761 4.88538 4.93781 4.98306 5.11655 5.19864 5.33640 5.43023 5.48559 5.54740 5.60248 5.70495 5.89522 6.00182 6.15099 6.57637 6.78358 6.81135 7.27784 7.40745 8.87089 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029571 B = 0.004930 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.634198 B = 5678.297391 C = 6510.266925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.135 4.135 3 C -0.082 4.082 4 C -0.125 4.125 5 C -0.113 4.113 6 C 0.145 3.855 7 N -0.665 5.665 8 C 0.519 3.481 9 O -0.558 6.558 10 C 0.027 3.973 11 H 0.046 0.954 12 C -0.122 4.122 13 C -0.532 4.532 14 H 0.049 0.951 15 C 0.023 3.977 16 N -0.909 5.909 17 Si 0.956 3.044 18 H -0.278 1.278 19 H -0.273 1.273 20 H -0.276 1.276 21 C -0.187 4.187 22 C 0.104 3.896 23 O -0.506 6.506 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.166 0.834 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.421 0.579 32 H 0.025 0.975 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.266 0.734 36 H 0.113 0.887 37 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.122 10.736 -1.380 19.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.136 4.136 3 C -0.100 4.100 4 C -0.128 4.128 5 C -0.169 4.169 6 C 0.050 3.950 7 N -0.310 5.310 8 C 0.310 3.690 9 O -0.435 6.435 10 C 0.006 3.994 11 H 0.064 0.936 12 C -0.180 4.180 13 C -0.571 4.571 14 H 0.067 0.933 15 C -0.177 4.177 16 N -0.548 5.548 17 Si 0.781 3.219 18 H -0.203 1.203 19 H -0.198 1.198 20 H -0.201 1.201 21 C -0.208 4.208 22 C 0.059 3.941 23 O -0.318 6.318 24 H 0.098 0.902 25 H 0.104 0.896 26 H 0.082 0.918 27 H 0.183 0.817 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.260 0.740 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.131 0.869 37 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -16.220 10.144 -1.649 19.202 hybrid contribution 1.012 -1.186 0.704 1.710 sum -15.208 8.958 -0.944 17.676 Atomic orbital electron populations 1.20656 0.88425 1.03600 1.03089 1.20462 0.98251 0.91670 1.03250 1.20992 0.92062 0.98310 0.98608 1.20000 0.94697 0.93872 1.04228 1.20804 0.99877 0.92547 1.03672 1.17796 0.83087 0.93920 1.00231 1.43726 1.04370 1.21481 1.61450 1.21890 0.91875 0.80256 0.74950 1.90487 1.71020 1.38660 1.43364 1.18847 0.84985 0.97296 0.98309 0.93644 1.21593 1.03774 0.94769 0.97822 1.21212 0.92485 1.04538 1.38845 0.93290 1.25567 0.96661 0.99849 0.95634 1.69930 1.02894 1.36492 1.45447 0.85649 0.77297 0.79992 0.78927 1.20344 1.19787 1.20127 1.21589 0.94806 0.98532 1.05914 1.18211 0.88488 0.86087 1.01272 1.84695 1.75696 1.36428 1.34951 0.90221 0.89579 0.91755 0.81656 0.89408 0.88751 0.92184 0.73967 0.95627 0.92687 0.90698 0.92454 0.86865 0.73839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.69 9.79 71.24 0.70 -1.00 16 2 C -0.13 -3.27 5.90 -19.74 -0.12 -3.39 16 3 C -0.08 -1.76 9.34 22.24 0.21 -1.55 16 4 C -0.13 -3.19 5.90 -19.73 -0.12 -3.31 16 5 C -0.11 -2.03 9.44 71.24 0.67 -1.35 16 6 C 0.15 4.99 6.41 38.14 0.24 5.23 16 7 N -0.66 -24.07 4.89 -303.55 -1.49 -25.56 16 8 C 0.52 24.24 6.95 87.66 0.61 24.85 16 9 O -0.56 -29.88 12.62 -3.04 -0.04 -29.91 16 10 C 0.03 1.34 2.65 -12.28 -0.03 1.31 16 11 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 12 C -0.12 -5.41 8.86 71.99 0.64 -4.77 16 13 C -0.53 -30.75 8.37 25.60 0.21 -30.53 16 14 H 0.05 3.02 6.75 -2.91 -0.02 3.00 16 15 C 0.02 1.25 5.30 84.65 0.45 1.70 16 16 N -0.91 -50.50 11.32 21.45 0.24 -50.26 16 17 Si 0.96 44.85 29.54 68.60 2.03 46.87 16 18 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 21 C -0.19 -7.16 8.65 22.49 0.19 -6.96 16 22 C 0.10 3.27 6.67 22.49 0.15 3.42 16 23 O -0.51 -14.37 12.54 -92.37 -1.16 -15.52 16 24 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.09 1.07 8.08 -2.38 -0.02 1.05 16 26 H 0.06 1.17 7.52 -2.39 -0.02 1.15 16 27 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 28 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.09 1.24 8.09 -2.39 -0.02 1.22 16 30 H 0.06 1.18 6.99 -2.39 -0.02 1.16 16 31 H 0.42 12.42 6.68 -92.71 -0.62 11.80 16 32 H 0.02 1.13 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.92 7.45 -2.39 -0.02 1.90 16 34 H 0.07 3.69 6.07 -2.39 -0.01 3.67 16 35 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 36 H 0.11 5.22 5.79 -2.91 -0.02 5.21 16 37 H 0.40 7.96 9.06 -74.06 -0.67 7.29 16 Total: -1.00 -71.08 307.89 3.22 -67.86 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: -0.18 Total: 22.87 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 3.81 Total: -16.35 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -1.24 Total: -75.82 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -1.20 Total: -45.44 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -71.08 3.22 -67.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.825 kcal (2) G-P(sol) polarization free energy of solvation -71.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds