Wall clock time and date at job start Mon Mar 30 2020 06:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47438 * 2 1 4 4 C 1.50697 * 109.46769 * 239.99600 * 2 1 3 5 5 H 1.08003 * 119.99518 * 239.99798 * 4 2 1 6 6 C 1.37877 * 120.00354 * 60.00698 * 4 2 1 7 7 N 1.31517 * 119.99291 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00255 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47395 * 179.97438 * 8 6 4 10 10 H 1.48504 * 109.47217 * 299.99795 * 8 6 4 11 11 H 1.48499 * 109.47287 * 59.99632 * 8 6 4 12 12 C 1.50700 * 109.47032 * 119.99842 * 2 1 3 13 13 O 1.21286 * 120.00236 * 84.19717 * 12 2 1 14 14 N 1.34776 * 119.99944 * 264.20180 * 12 2 1 15 15 C 1.46538 * 124.97929 * 4.78054 * 14 12 2 16 16 C 1.53741 * 105.19867 * 179.86022 * 15 14 12 17 17 C 1.51211 * 104.57946 * 0.38688 * 16 15 14 18 18 C 1.38556 * 108.56624 * 359.75334 * 17 16 15 19 19 C 1.39607 * 119.06198 * 179.97438 * 18 17 16 20 20 C 1.37884 * 120.33505 * 359.97438 * 19 18 17 21 21 C 1.38213 * 120.25731 * 0.02562 * 20 19 18 22 22 C 1.38357 * 130.97789 * 179.72654 * 17 16 15 23 23 F 1.35093 * 119.95240 * 0.02562 * 22 17 16 24 24 H 1.09003 * 109.46735 * 293.92235 * 1 2 3 25 25 H 1.08999 * 109.46661 * 53.91387 * 1 2 3 26 26 H 1.08996 * 109.47116 * 173.91607 * 1 2 3 27 27 H 0.97004 * 119.99099 * 180.02562 * 7 6 4 28 28 H 1.08995 * 110.29724 * 298.93814 * 15 14 12 29 29 H 1.09008 * 110.29545 * 61.06917 * 15 14 12 30 30 H 1.08996 * 110.62202 * 241.50477 * 16 15 14 31 31 H 1.09004 * 110.30575 * 119.10851 * 16 15 14 32 32 H 1.07998 * 119.83054 * 179.97438 * 19 18 17 33 33 H 1.08006 * 119.87584 * 179.97438 * 20 19 18 34 34 H 1.08000 * 120.10406 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3224 -1.1198 -4.0078 9 1 1.8270 -0.4202 -5.2204 10 1 3.8075 -1.1193 -4.0076 11 1 1.8279 -2.5200 -4.0080 12 6 2.0324 -0.7104 1.2305 13 8 2.1344 -1.9189 1.2339 14 7 2.3681 -0.0027 2.3273 15 6 2.1952 1.4445 2.4787 16 6 2.7179 1.7676 3.8880 17 6 3.1706 0.4350 4.4408 18 6 2.9383 -0.5410 3.4852 19 6 3.2791 -1.8644 3.7706 20 6 3.8394 -2.1923 4.9870 21 6 4.0680 -1.2130 5.9352 22 6 3.7324 0.1024 5.6607 23 9 3.9546 1.0622 6.5851 24 1 -0.3633 0.4167 0.9394 25 1 -0.3632 0.6053 -0.8305 26 1 -0.3633 -1.0218 -0.1089 27 1 0.7084 1.1607 -3.4844 28 1 2.7776 1.9757 1.7260 29 1 1.1409 1.7097 2.3988 30 1 1.9231 2.1854 4.5058 31 1 3.5576 2.4603 3.8304 32 1 3.1031 -2.6351 3.0349 33 1 4.0999 -3.2186 5.2002 34 1 4.5066 -1.4728 6.8873 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597510858.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:10 Heat of formation + Delta-G solvation = -55.072650 kcal Electronic energy + Delta-G solvation = -19569.327126 eV Core-core repulsion = 16381.397969 eV Total energy + Delta-G solvation = -3187.929157 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.82404 -40.77260 -38.15690 -36.06342 -33.90953 -31.93137 -30.81122 -29.35094 -28.75429 -25.31510 -24.08928 -23.08116 -21.79946 -21.44639 -19.11464 -17.08476 -16.65295 -16.35493 -16.10193 -15.64869 -15.31363 -15.18726 -15.06274 -14.52370 -13.69359 -13.53614 -13.00311 -12.84212 -12.58033 -12.24792 -12.22433 -11.89757 -11.52900 -11.46883 -11.22791 -11.07560 -10.84323 -10.79924 -10.40529 -10.19113 -9.95764 -9.16391 -8.85406 -8.57635 -8.48122 -7.60345 -6.15863 -4.20647 1.26023 1.31652 3.16741 3.27744 3.29932 3.32188 3.39077 3.84196 4.32887 4.35027 4.45198 4.61507 4.97291 5.15000 5.18963 5.25708 5.37682 5.51968 5.60945 5.80255 5.80309 5.95222 6.04772 6.15424 6.41248 6.51184 6.55322 6.65319 6.71567 6.83615 7.11841 7.33507 7.61901 7.75154 7.89924 8.13999 8.78432 8.84963 9.44439 10.91757 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.034421 B = 0.005123 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.264536 B = 5463.998199 C = 5900.516504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.038 3.962 3 H 0.049 0.951 4 C -0.507 4.507 5 H 0.067 0.933 6 C 0.064 3.936 7 N -0.892 5.892 8 Si 0.903 3.097 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.275 1.275 12 C 0.533 3.467 13 O -0.518 6.518 14 N -0.563 5.563 15 C 0.105 3.895 16 C -0.078 4.078 17 C -0.192 4.192 18 C 0.195 3.805 19 C -0.151 4.151 20 C -0.064 4.064 21 C -0.193 4.193 22 C 0.138 3.862 23 F -0.142 7.142 24 H 0.011 0.989 25 H 0.094 0.906 26 H 0.039 0.961 27 H 0.264 0.736 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.146 0.854 33 H 0.134 0.866 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.315 1.816 13.805 14.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.017 3.983 3 H 0.067 0.933 4 C -0.546 4.546 5 H 0.085 0.915 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.730 3.270 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.200 1.200 12 C 0.327 3.673 13 O -0.391 6.391 14 N -0.286 5.286 15 C -0.017 4.017 16 C -0.115 4.115 17 C -0.196 4.196 18 C 0.097 3.903 19 C -0.172 4.172 20 C -0.083 4.083 21 C -0.213 4.213 22 C 0.118 3.882 23 F -0.121 7.121 24 H 0.030 0.970 25 H 0.112 0.888 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.163 0.837 33 H 0.152 0.848 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.194 1.304 13.459 13.894 hybrid contribution 0.355 -0.183 -0.619 0.737 sum 3.548 1.121 12.839 13.368 Atomic orbital electron populations 1.21698 0.95601 1.01422 0.99844 1.18923 0.94575 0.96671 0.88094 0.93310 1.20916 1.32021 1.12687 0.88943 0.91514 1.24913 0.94842 0.94961 0.99091 1.69866 1.36413 1.22766 1.23970 0.86466 0.79231 0.79832 0.81428 1.21154 1.20135 1.20014 1.22377 0.74336 0.87779 0.82838 1.90520 1.51546 1.14842 1.82231 1.46661 1.59331 1.09183 1.13442 1.22122 1.02699 0.80018 0.96911 1.21027 1.01535 0.94177 0.94768 1.19921 1.08305 0.97001 0.94398 1.18363 0.92483 0.93000 0.86484 1.21087 1.02638 0.94904 0.98613 1.20731 0.96397 0.99126 0.92044 1.20886 1.07536 0.91025 1.01832 1.16868 1.00233 0.85699 0.85414 1.91457 1.92644 1.63167 1.64806 0.97031 0.88763 0.94179 0.92637 0.89230 0.89593 0.89295 0.89271 0.83653 0.84779 0.84859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.86 37.16 0.33 -2.62 16 2 C 0.04 0.93 2.26 -92.92 -0.21 0.72 16 3 H 0.05 1.17 6.86 -51.93 -0.36 0.82 16 4 C -0.51 -13.92 8.31 -34.44 -0.29 -14.20 16 5 H 0.07 1.91 7.28 -52.48 -0.38 1.53 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.16 11.39 55.43 0.63 -23.53 16 8 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 9 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 12 C 0.53 12.16 6.76 -10.99 -0.07 12.09 16 13 O -0.52 -13.04 14.33 5.55 0.08 -12.96 16 14 N -0.56 -10.66 3.13 -112.90 -0.35 -11.02 16 15 C 0.10 1.55 6.34 -3.64 -0.02 1.53 16 16 C -0.08 -0.98 6.93 -27.25 -0.19 -1.17 16 17 C -0.19 -2.89 6.21 -104.21 -0.65 -3.54 16 18 C 0.19 3.42 6.62 -83.58 -0.55 2.87 16 19 C -0.15 -2.52 9.46 -39.20 -0.37 -2.89 16 20 C -0.06 -0.84 10.02 -39.72 -0.40 -1.24 16 21 C -0.19 -2.41 10.04 -39.49 -0.40 -2.81 16 22 C 0.14 1.92 7.29 -39.44 -0.29 1.64 16 23 F -0.14 -1.92 17.26 2.25 0.04 -1.88 16 24 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 25 H 0.09 2.32 6.26 -51.93 -0.32 2.00 16 26 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.09 1.28 7.67 -51.93 -0.40 0.88 16 29 H 0.09 1.18 8.14 -51.92 -0.42 0.75 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.15 2.68 6.29 -52.49 -0.33 2.35 16 33 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 34 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 290.86 15.07 4.38 4.38 Total: -1.00 -29.74 290.86 -7.33 -37.07 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -3.89 Total: -0.18 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -3.20 Total: -8.00 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.28 Total: -34.55 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.08 Total: -12.96 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.74 -7.33 -37.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597510858.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.004 kcal (2) G-P(sol) polarization free energy of solvation -29.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds