Wall clock time and date at job start Mon Mar 30 2020 06:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47438 * 2 1 4 4 C 1.50697 * 109.46769 * 239.99600 * 2 1 3 5 5 H 1.08003 * 119.99518 * 239.99798 * 4 2 1 6 6 C 1.37877 * 120.00354 * 60.00698 * 4 2 1 7 7 N 1.31517 * 119.99291 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00255 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47395 * 179.97438 * 8 6 4 10 10 H 1.48504 * 109.47217 * 299.99795 * 8 6 4 11 11 H 1.48499 * 109.47287 * 59.99632 * 8 6 4 12 12 C 1.50700 * 109.47032 * 119.99842 * 2 1 3 13 13 O 1.21286 * 120.00236 * 84.19717 * 12 2 1 14 14 N 1.34776 * 119.99944 * 264.20180 * 12 2 1 15 15 C 1.46538 * 124.97929 * 4.78054 * 14 12 2 16 16 C 1.53741 * 105.19867 * 179.86022 * 15 14 12 17 17 C 1.51211 * 104.57946 * 0.38688 * 16 15 14 18 18 C 1.38556 * 108.56624 * 359.75334 * 17 16 15 19 19 C 1.39607 * 119.06198 * 179.97438 * 18 17 16 20 20 C 1.37884 * 120.33505 * 359.97438 * 19 18 17 21 21 C 1.38213 * 120.25731 * 0.02562 * 20 19 18 22 22 C 1.38357 * 130.97789 * 179.72654 * 17 16 15 23 23 F 1.35093 * 119.95240 * 0.02562 * 22 17 16 24 24 H 1.09003 * 109.46735 * 293.92235 * 1 2 3 25 25 H 1.08999 * 109.46661 * 53.91387 * 1 2 3 26 26 H 1.08996 * 109.47116 * 173.91607 * 1 2 3 27 27 H 0.97004 * 119.99099 * 180.02562 * 7 6 4 28 28 H 1.08995 * 110.29724 * 298.93814 * 15 14 12 29 29 H 1.09008 * 110.29545 * 61.06917 * 15 14 12 30 30 H 1.08996 * 110.62202 * 241.50477 * 16 15 14 31 31 H 1.09004 * 110.30575 * 119.10851 * 16 15 14 32 32 H 1.07998 * 119.83054 * 179.97438 * 19 18 17 33 33 H 1.08006 * 119.87584 * 179.97438 * 20 19 18 34 34 H 1.08000 * 120.10406 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3224 -1.1198 -4.0078 9 1 1.8270 -0.4202 -5.2204 10 1 3.8075 -1.1193 -4.0076 11 1 1.8279 -2.5200 -4.0080 12 6 2.0324 -0.7104 1.2305 13 8 2.1344 -1.9189 1.2339 14 7 2.3681 -0.0027 2.3273 15 6 2.1952 1.4445 2.4787 16 6 2.7179 1.7676 3.8880 17 6 3.1706 0.4350 4.4408 18 6 2.9383 -0.5410 3.4852 19 6 3.2791 -1.8644 3.7706 20 6 3.8394 -2.1923 4.9870 21 6 4.0680 -1.2130 5.9352 22 6 3.7324 0.1024 5.6607 23 9 3.9546 1.0622 6.5851 24 1 -0.3633 0.4167 0.9394 25 1 -0.3632 0.6053 -0.8305 26 1 -0.3633 -1.0218 -0.1089 27 1 0.7084 1.1607 -3.4844 28 1 2.7776 1.9757 1.7260 29 1 1.1409 1.7097 2.3988 30 1 1.9231 2.1854 4.5058 31 1 3.5576 2.4603 3.8304 32 1 3.1031 -2.6351 3.0349 33 1 4.0999 -3.2186 5.2002 34 1 4.5066 -1.4728 6.8873 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597510858.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:10 Heat of formation + Delta-G solvation = -71.214699 kcal Electronic energy + Delta-G solvation = -19570.027098 eV Core-core repulsion = 16381.397969 eV Total energy + Delta-G solvation = -3188.629129 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.88891 -42.12060 -39.69124 -37.34166 -35.88156 -33.27047 -32.60603 -30.66523 -29.89958 -27.34727 -25.64728 -24.23572 -23.33599 -22.61620 -20.58523 -18.64568 -18.30861 -17.86470 -17.30813 -16.93482 -16.71778 -16.47291 -16.39176 -16.12813 -15.18791 -15.06066 -14.65073 -14.13961 -13.92855 -13.60444 -13.41554 -13.36889 -13.01736 -12.94677 -12.72683 -12.65774 -12.62255 -12.32899 -12.28344 -12.12417 -11.25853 -11.13626 -10.70659 -10.45763 -9.68674 -8.89756 -8.21574 -6.33169 0.11078 0.13511 1.40172 1.41756 1.49231 1.69044 1.80246 2.40964 2.62146 3.08580 3.21126 3.30653 3.50409 3.87809 4.09921 4.11821 4.13771 4.34246 4.35803 4.61708 4.67623 4.76228 4.83535 4.90608 4.96595 4.97630 5.09115 5.15370 5.34881 5.39496 5.46504 5.64005 5.81793 5.94843 6.06961 6.35109 6.69618 7.11666 7.34939 8.84606 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.034421 B = 0.005123 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.264536 B = 5463.998199 C = 5900.516504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.037 3.963 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.042 0.958 6 C 0.027 3.973 7 N -0.905 5.905 8 Si 0.957 3.043 9 H -0.272 1.272 10 H -0.273 1.273 11 H -0.278 1.278 12 C 0.532 3.468 13 O -0.558 6.558 14 N -0.566 5.566 15 C 0.095 3.905 16 C -0.070 4.070 17 C -0.188 4.188 18 C 0.153 3.847 19 C -0.172 4.172 20 C -0.056 4.056 21 C -0.173 4.173 22 C 0.132 3.868 23 F -0.136 7.136 24 H 0.041 0.959 25 H 0.078 0.922 26 H 0.021 0.979 27 H 0.268 0.732 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.167 0.833 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.044 2.631 15.702 16.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.016 3.984 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.061 0.939 6 C -0.173 4.173 7 N -0.543 5.543 8 Si 0.782 3.218 9 H -0.197 1.197 10 H -0.199 1.199 11 H -0.204 1.204 12 C 0.325 3.675 13 O -0.435 6.435 14 N -0.288 5.288 15 C -0.026 4.026 16 C -0.107 4.107 17 C -0.192 4.192 18 C 0.057 3.943 19 C -0.193 4.193 20 C -0.075 4.075 21 C -0.192 4.192 22 C 0.112 3.888 23 F -0.115 7.115 24 H 0.060 0.940 25 H 0.097 0.903 26 H 0.040 0.960 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.135 0.865 33 H 0.184 0.816 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.933 2.163 15.402 16.043 hybrid contribution 0.178 -0.427 -1.066 1.162 sum 4.111 1.736 14.337 15.015 Atomic orbital electron populations 1.21515 0.94957 1.00094 1.00759 1.18823 0.95144 0.96288 0.88185 0.93322 1.21061 1.32666 1.12599 0.90956 0.93939 1.25547 0.94904 0.95614 1.01283 1.69930 1.36466 1.23208 1.24735 0.85628 0.78786 0.78648 0.78719 1.19666 1.19857 1.20381 1.21932 0.74600 0.87291 0.83669 1.90490 1.53593 1.16199 1.83189 1.46436 1.58823 1.10611 1.12974 1.22422 1.03691 0.77779 0.98703 1.21112 1.02968 0.93417 0.93184 1.20143 1.07449 0.97390 0.94189 1.18601 0.94860 0.94095 0.86792 1.21139 1.04146 0.94318 0.99746 1.21042 0.94915 1.01037 0.90462 1.21314 1.05225 0.90016 1.02682 1.16995 1.00201 0.86436 0.85140 1.91479 1.92547 1.63053 1.64381 0.94018 0.90280 0.95977 0.92253 0.89114 0.88542 0.86810 0.87186 0.86461 0.81570 0.81231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 8.86 71.98 0.64 -4.78 16 2 C 0.04 1.84 2.26 -12.29 -0.03 1.81 16 3 H 0.05 2.40 6.86 -2.39 -0.02 2.38 16 4 C -0.53 -30.36 8.31 25.60 0.21 -30.15 16 5 H 0.04 2.56 7.28 -2.91 -0.02 2.54 16 6 C 0.03 1.47 5.30 84.65 0.45 1.92 16 7 N -0.91 -49.31 11.39 21.45 0.24 -49.07 16 8 Si 0.96 43.76 29.54 68.60 2.03 45.78 16 9 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 C 0.53 25.20 6.76 87.66 0.59 25.79 16 13 O -0.56 -29.68 14.33 -3.05 -0.04 -29.73 16 14 N -0.57 -21.70 3.13 -629.49 -1.97 -23.67 16 15 C 0.10 2.72 6.34 86.62 0.55 3.27 16 16 C -0.07 -1.58 6.93 30.26 0.21 -1.37 16 17 C -0.19 -5.28 6.21 -19.60 -0.12 -5.40 16 18 C 0.15 5.34 6.62 38.27 0.25 5.60 16 19 C -0.17 -5.78 9.46 22.52 0.21 -5.57 16 20 C -0.06 -1.34 10.02 22.18 0.22 -1.12 16 21 C -0.17 -3.68 10.04 22.33 0.22 -3.45 16 22 C 0.13 3.27 7.29 22.36 0.16 3.43 16 23 F -0.14 -3.17 17.26 44.97 0.78 -2.39 16 24 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.08 3.95 6.26 -2.39 -0.01 3.93 16 26 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 28 H 0.09 2.54 7.67 -2.39 -0.02 2.52 16 29 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16 30 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.12 4.58 6.29 -2.91 -0.02 4.56 16 33 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 34 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -66.14 290.86 5.73 -60.41 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 1.12 Total: 8.68 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 3.58 Total: -10.02 kcal Atomic # 7 Polarization: -71.01 SS G_CDS: -1.73 Total: -72.74 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.04 Total: -29.73 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.78 Total: -2.39 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -66.14 5.73 -60.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597510858.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.801 kcal (2) G-P(sol) polarization free energy of solvation -66.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds