Wall clock time and date at job start Mon Mar 30 2020 06:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47193 * 2 1 4 4 C 1.50697 * 109.47256 * 120.00180 * 2 1 3 5 5 H 1.07995 * 120.00441 * 115.08550 * 4 2 1 6 6 C 1.37878 * 119.99700 * 295.09367 * 4 2 1 7 7 N 1.31517 * 120.00216 * 155.95981 * 6 4 2 8 8 Si 1.86802 * 120.00188 * 335.95403 * 6 4 2 9 9 H 1.48502 * 109.47305 * 269.01322 * 8 6 4 10 10 H 1.48497 * 109.46705 * 29.01155 * 8 6 4 11 11 H 1.48501 * 109.47154 * 149.01333 * 8 6 4 12 12 C 1.50702 * 109.47056 * 239.99950 * 2 1 3 13 13 O 1.21282 * 120.00038 * 276.04903 * 12 2 1 14 14 N 1.34778 * 120.00018 * 96.04675 * 12 2 1 15 15 C 1.46642 * 126.56561 * 5.59940 * 14 12 2 16 16 C 1.50782 * 107.70014 * 179.88210 * 15 14 12 17 17 C 1.38457 * 131.18873 * 180.14241 * 16 15 14 18 18 C 1.38158 * 120.15655 * 180.25366 * 17 16 15 19 19 C 1.38210 * 119.99180 * 0.02562 * 18 17 16 20 20 C 1.38377 * 119.93405 * 0.02562 * 19 18 17 21 21 F 1.35098 * 119.97554 * 180.02562 * 20 19 18 22 22 C 1.38032 * 108.85971 * 0.39552 * 16 15 14 23 23 C 1.46636 * 126.56900 * 185.91348 * 14 12 2 24 24 H 1.09002 * 109.46781 * 294.19137 * 1 2 3 25 25 H 1.09000 * 109.46729 * 54.18601 * 1 2 3 26 26 H 1.08994 * 109.47036 * 174.18803 * 1 2 3 27 27 H 0.96998 * 120.00427 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.81202 * 299.57566 * 15 14 12 29 29 H 1.09008 * 109.80861 * 60.47231 * 15 14 12 30 30 H 1.08002 * 119.92550 * 0.27414 * 17 16 15 31 31 H 1.08006 * 120.00205 * 179.97438 * 18 17 16 32 32 H 1.08005 * 120.03828 * 180.02562 * 19 18 17 33 33 H 1.08993 * 109.81261 * 299.52819 * 23 14 12 34 34 H 1.09007 * 109.81027 * 60.36347 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5863 -1.6324 1.1333 6 6 1.7848 -0.1833 2.4801 7 7 1.7787 -0.9681 3.5355 8 14 1.4580 1.6456 2.6745 9 1 2.7390 2.3534 2.9259 10 1 0.8370 2.1721 1.4326 11 1 0.5381 1.8652 3.8194 12 6 2.0324 -0.7104 -1.2305 13 8 2.1302 -1.9193 -1.2353 14 7 2.3729 -0.0024 -2.3256 15 6 2.4213 1.4586 -2.4411 16 6 2.8560 1.7933 -3.8456 17 6 3.0615 3.0116 -4.4706 18 6 3.4619 3.0549 -5.7921 19 6 3.6578 1.8802 -6.4935 20 6 3.4518 0.6617 -5.8709 21 9 3.6435 -0.4871 -6.5555 22 6 3.0510 0.6189 -4.5441 23 6 2.7599 -0.5455 -3.6316 24 1 -0.3633 0.4211 0.9375 25 1 -0.3633 0.6014 -0.8334 26 1 -0.3633 -1.0223 -0.1041 27 1 1.6048 -0.5972 4.4147 28 1 1.4336 1.8774 -2.2481 29 1 3.1403 1.8620 -1.7279 30 1 2.9087 3.9303 -3.9236 31 1 3.6211 4.0066 -6.2773 32 1 3.9712 1.9131 -7.5265 33 1 3.6514 -1.1635 -3.5252 34 1 1.9439 -1.1415 -4.0403 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597765491.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:00 Heat of formation + Delta-G solvation = -65.196920 kcal Electronic energy + Delta-G solvation = -19366.024361 eV Core-core repulsion = 16177.656183 eV Total energy + Delta-G solvation = -3188.368178 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.94514 -41.72516 -40.00085 -37.16219 -35.77851 -33.45213 -32.11432 -32.01731 -28.84497 -27.24083 -26.84740 -24.03263 -22.74609 -22.56401 -20.38485 -18.99118 -18.32966 -17.88521 -17.35240 -17.13724 -16.79627 -16.59769 -16.39990 -15.89529 -15.12017 -14.95973 -14.49941 -14.24479 -14.15101 -14.06660 -13.92381 -13.74349 -13.23897 -12.97432 -12.80763 -12.60186 -12.44400 -12.32997 -12.20547 -11.61644 -11.48222 -10.70778 -10.51483 -10.30907 -9.66922 -9.43219 -8.34477 -6.32286 0.09123 0.12402 1.39671 1.43929 1.54795 1.67841 1.81381 2.37931 2.51666 2.96780 3.06634 3.21529 3.33663 3.87724 4.02947 4.13035 4.26669 4.34704 4.40742 4.47008 4.49684 4.51118 4.68029 4.77713 4.79493 4.95645 5.00988 5.10086 5.22943 5.33758 5.42120 5.43194 5.56839 5.86395 6.18016 6.44800 6.72955 7.17742 7.29596 8.83492 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.031319 B = 0.005242 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.812152 B = 5340.038709 C = 5969.636506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.013 3.987 3 H 0.071 0.929 4 C -0.542 4.542 5 H 0.016 0.984 6 C 0.024 3.976 7 N -0.932 5.932 8 Si 0.937 3.063 9 H -0.267 1.267 10 H -0.215 1.215 11 H -0.283 1.283 12 C 0.551 3.449 13 O -0.584 6.584 14 N -0.626 5.626 15 C 0.135 3.865 16 C -0.078 4.078 17 C -0.097 4.097 18 C -0.072 4.072 19 C -0.146 4.146 20 C 0.100 3.900 21 F -0.151 7.151 22 C -0.162 4.162 23 C 0.152 3.848 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.031 0.969 27 H 0.270 0.730 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.167 0.833 31 H 0.181 0.819 32 H 0.165 0.835 33 H 0.061 0.939 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.259 16.908 -20.633 26.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.008 4.008 3 H 0.089 0.911 4 C -0.579 4.579 5 H 0.035 0.965 6 C -0.175 4.175 7 N -0.569 5.569 8 Si 0.758 3.242 9 H -0.193 1.193 10 H -0.137 1.137 11 H -0.209 1.209 12 C 0.343 3.657 13 O -0.463 6.463 14 N -0.361 5.361 15 C 0.013 3.987 16 C -0.078 4.078 17 C -0.115 4.115 18 C -0.090 4.090 19 C -0.164 4.164 20 C 0.081 3.919 21 F -0.129 7.129 22 C -0.163 4.163 23 C 0.029 3.971 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.051 0.949 27 H 0.079 0.921 28 H 0.127 0.873 29 H 0.116 0.884 30 H 0.185 0.815 31 H 0.198 0.802 32 H 0.183 0.817 33 H 0.079 0.921 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.264 16.114 -20.373 26.006 hybrid contribution 0.202 -0.899 0.619 1.110 sum 1.465 15.215 -19.755 24.978 Atomic orbital electron populations 1.21892 0.94403 1.00663 1.01616 1.19142 0.95346 0.97130 0.89206 0.91100 1.20765 1.37817 1.08799 0.90522 0.96533 1.25945 0.93369 1.03663 0.94564 1.70224 1.48404 1.37826 1.00450 0.85926 0.79122 0.79026 0.80173 1.19255 1.13656 1.20895 1.21100 0.74832 0.86766 0.83001 1.90577 1.55541 1.17015 1.83125 1.48150 1.68938 1.08403 1.10596 1.20623 1.03940 0.79686 0.94431 1.20319 0.99289 0.93699 0.94509 1.20995 0.98670 0.96455 0.95362 1.21448 0.95437 0.99007 0.93106 1.21456 1.02595 0.89861 1.02494 1.17463 1.03221 0.82984 0.88274 1.91471 1.92965 1.49032 1.79473 1.20210 1.05645 0.96569 0.93908 1.19977 1.00053 0.94585 0.82497 0.92276 0.91018 0.94946 0.92096 0.87337 0.88440 0.81500 0.80189 0.81733 0.92091 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.29 8.69 71.98 0.63 -4.67 16 2 C 0.01 0.63 1.93 -12.28 -0.02 0.60 16 3 H 0.07 2.85 5.37 -2.39 -0.01 2.84 16 4 C -0.54 -32.27 8.70 25.60 0.22 -32.05 16 5 H 0.02 1.16 7.47 -2.91 -0.02 1.14 16 6 C 0.02 1.38 5.19 84.65 0.44 1.82 16 7 N -0.93 -58.39 13.96 21.45 0.30 -58.09 16 8 Si 0.94 40.11 26.08 68.60 1.79 41.90 16 9 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 10 H -0.21 -7.63 6.06 99.48 0.60 -7.03 16 11 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 12 C 0.55 25.95 6.84 87.66 0.60 26.55 16 13 O -0.58 -33.32 16.50 -3.04 -0.05 -33.37 16 14 N -0.63 -22.82 3.34 -829.50 -2.77 -25.58 16 15 C 0.13 3.45 6.00 85.63 0.51 3.96 16 16 C -0.08 -1.65 6.22 -19.84 -0.12 -1.78 16 17 C -0.10 -1.26 10.04 22.30 0.22 -1.04 16 18 C -0.07 -0.73 10.04 22.24 0.22 -0.51 16 19 C -0.15 -2.09 10.03 22.30 0.22 -1.86 16 20 C 0.10 2.26 7.30 22.41 0.16 2.42 16 21 F -0.15 -3.86 17.27 44.97 0.78 -3.09 16 22 C -0.16 -4.20 6.20 -19.79 -0.12 -4.32 16 23 C 0.15 5.06 6.91 85.63 0.59 5.66 16 24 H 0.06 2.41 5.87 -2.39 -0.01 2.40 16 25 H 0.07 2.30 8.14 -2.39 -0.02 2.29 16 26 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 28 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.10 2.33 8.02 -2.38 -0.02 2.31 16 30 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 31 H 0.18 0.37 8.06 -2.91 -0.02 0.34 16 32 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 33 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 Total: -1.00 -79.86 291.41 4.61 -75.24 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 1.01 Total: 8.20 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 3.56 Total: -5.21 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -2.47 Total: -83.68 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -0.05 Total: -33.37 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.78 Total: -3.09 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 1.79 Total: 41.90 kcal Total: -79.86 4.61 -75.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597765491.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.047 kcal (2) G-P(sol) polarization free energy of solvation -79.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds