Wall clock time and date at job start Mon Mar 30 2020 06:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37990 * 120.04972 * 2 1 4 4 C 1.38305 * 120.17684 * 180.02562 * 3 2 1 5 5 C 1.38586 * 120.26464 * 0.29328 * 4 3 2 6 6 F 1.35100 * 119.95219 * 179.72884 * 5 4 3 7 7 C 1.38180 * 120.09240 * 359.44952 * 5 4 3 8 8 C 1.39554 * 119.82618 * 0.53051 * 7 5 4 9 9 C 1.47857 * 120.13235 * 179.76760 * 8 7 5 10 10 O 1.21560 * 119.99772 * 214.39681 * 9 8 7 11 11 N 1.34776 * 120.00133 * 34.40642 * 9 8 7 12 12 C 1.47065 * 136.05517 * 5.22804 * 11 9 8 13 13 C 1.53756 * 87.88457 * 152.96944 * 12 11 9 14 14 C 1.50709 * 114.08619 * 139.78081 * 13 12 11 15 15 H 1.07993 * 119.99584 * 266.56825 * 14 13 12 16 16 C 1.37876 * 119.99915 * 86.55836 * 14 13 12 17 17 N 1.31518 * 119.99803 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00038 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46933 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47089 * 120.00430 * 18 16 14 21 21 H 1.48497 * 109.47279 * 240.00576 * 18 16 14 22 22 C 1.47063 * 136.05847 * 185.61683 * 11 9 8 23 23 H 1.08997 * 109.46987 * 86.72921 * 1 2 3 24 24 H 1.09005 * 109.46794 * 206.72820 * 1 2 3 25 25 H 1.08998 * 109.46817 * 326.72572 * 1 2 3 26 26 H 1.07994 * 119.91061 * 0.02562 * 3 2 1 27 27 H 1.07994 * 119.86624 * 180.02562 * 4 3 2 28 28 H 1.08007 * 120.08564 * 180.25700 * 7 5 4 29 29 H 1.08998 * 113.47291 * 267.70201 * 12 11 9 30 30 H 1.09005 * 113.46580 * 38.14789 * 12 11 9 31 31 H 1.09001 * 114.57874 * 272.66671 * 13 12 11 32 32 H 0.96999 * 119.99300 * 179.97438 * 17 16 14 33 33 H 1.08999 * 113.46366 * 321.85489 * 22 11 9 34 34 H 1.08994 * 113.47340 * 92.29522 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1944 0.0000 4 6 3.5810 1.1975 -0.0005 5 6 4.2821 0.0021 -0.0072 6 9 5.6330 0.0125 -0.0132 7 6 3.6014 -1.2004 -0.0019 8 6 2.2059 -1.2080 -0.0010 9 6 1.4706 -2.4908 -0.0005 10 8 0.4143 -2.5861 -0.5945 11 7 1.9714 -3.5543 0.6588 12 6 3.1209 -3.8086 1.5401 13 6 2.3087 -4.9489 2.1758 14 6 3.1166 -6.1844 2.4795 15 1 3.1665 -6.9875 1.7593 16 6 3.7921 -6.2892 3.6769 17 7 3.7310 -5.3112 4.5541 18 14 4.7941 -7.8202 4.0531 19 1 4.7015 -8.7652 2.9114 20 1 6.2139 -7.4420 4.2684 21 1 4.2637 -8.4701 5.2785 22 6 1.6127 -4.9727 0.8079 23 1 -0.3633 0.0586 -1.0260 24 1 -0.3633 -0.9179 0.4622 25 1 -0.3633 0.8592 0.5638 26 1 1.6573 2.1293 0.0004 27 1 4.1167 2.1352 -0.0001 28 1 4.1479 -2.1320 -0.0029 29 1 4.0082 -4.1519 1.0082 30 1 3.3313 -2.9885 2.2266 31 1 1.6645 -4.6420 2.9998 32 1 4.2060 -5.3851 5.3966 33 1 0.5381 -5.1444 0.8705 34 1 2.1023 -5.6229 0.0829 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598034871.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:26 Heat of formation + Delta-G solvation = -23.684610 kcal Electronic energy + Delta-G solvation = -19287.812349 eV Core-core repulsion = 16101.244280 eV Total energy + Delta-G solvation = -3186.568069 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.85490 -40.14991 -38.56311 -36.94605 -32.81361 -32.30556 -31.59888 -29.07279 -26.70950 -25.30256 -25.06370 -23.62324 -21.64409 -20.49325 -18.82843 -17.27543 -16.93076 -16.50531 -15.91325 -15.63890 -15.45229 -14.99683 -14.71227 -14.43161 -13.85305 -13.75146 -13.49271 -12.97141 -12.56134 -12.29520 -11.91245 -11.79690 -11.67487 -11.61256 -11.35581 -11.25149 -11.00224 -10.81504 -10.37992 -9.70301 -9.30059 -9.13536 -9.04542 -8.63263 -8.54174 -7.93887 -6.21841 -4.27922 0.84031 1.13268 2.99373 3.21025 3.29996 3.32758 3.43158 3.72083 4.22023 4.30651 4.61042 4.77017 4.87335 5.00153 5.08602 5.18420 5.58636 5.67708 5.79208 5.86105 5.96605 5.99866 6.07986 6.10116 6.16119 6.27759 6.38018 6.43532 6.51608 6.61618 6.73943 6.82181 7.50570 7.75705 8.12816 8.36813 8.61999 8.76680 9.39438 10.87871 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.022372 B = 0.005444 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.261460 B = 5141.805309 C = 5964.112313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.044 4.044 3 C -0.103 4.103 4 C -0.134 4.134 5 C 0.084 3.916 6 F -0.139 7.139 7 C -0.113 4.113 8 C -0.091 4.091 9 C 0.574 3.426 10 O -0.551 6.551 11 N -0.636 5.636 12 C 0.095 3.905 13 C 0.036 3.964 14 C -0.518 4.518 15 H 0.065 0.935 16 C 0.069 3.931 17 N -0.885 5.885 18 Si 0.896 3.104 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.101 3.899 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.062 0.938 26 H 0.137 0.863 27 H 0.137 0.863 28 H 0.143 0.857 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.264 0.736 33 H 0.060 0.940 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.719 11.293 -6.845 13.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.045 4.045 3 C -0.121 4.121 4 C -0.153 4.153 5 C 0.065 3.935 6 F -0.117 7.117 7 C -0.132 4.132 8 C -0.094 4.094 9 C 0.364 3.636 10 O -0.432 6.432 11 N -0.368 5.368 12 C -0.028 4.028 13 C 0.017 3.983 14 C -0.556 4.556 15 H 0.083 0.917 16 C -0.135 4.135 17 N -0.521 5.521 18 Si 0.723 3.277 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.208 1.208 22 C -0.021 4.021 23 H 0.096 0.904 24 H 0.100 0.900 25 H 0.081 0.919 26 H 0.155 0.845 27 H 0.155 0.845 28 H 0.161 0.839 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.239 11.458 -7.075 13.523 hybrid contribution 1.147 -0.661 0.272 1.352 sum -0.092 10.797 -6.803 12.762 Atomic orbital electron populations 1.20895 0.89815 1.03399 1.03009 1.20052 0.97127 0.91319 0.96040 1.20822 0.92962 0.97817 1.00543 1.21239 0.94929 0.97086 1.02003 1.17510 0.77031 0.94308 1.04650 1.91508 1.28744 1.97388 1.94087 1.21417 0.93912 0.97957 0.99912 1.19743 0.92612 0.93908 1.03140 1.17643 0.84845 0.82651 0.78499 1.90719 1.22682 1.84282 1.45511 1.49973 1.30530 1.09527 1.46783 1.23780 0.89682 0.99493 0.89810 1.20402 0.93539 0.93699 0.90701 1.20937 1.29957 1.02158 1.02569 0.91699 1.25037 0.96267 0.96390 0.95826 1.69964 1.41973 1.31842 1.08336 0.86475 0.79817 0.82914 0.78481 1.19524 1.20872 1.20830 1.23390 1.00191 0.78711 0.99803 0.90415 0.89958 0.91870 0.84530 0.84532 0.83946 0.90640 0.91951 0.91189 0.92622 0.92161 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 8.96 36.00 0.32 -1.20 16 2 C -0.04 -0.63 5.91 -104.22 -0.62 -1.25 16 3 C -0.10 -1.19 9.70 -39.65 -0.38 -1.58 16 4 C -0.13 -1.57 10.02 -39.43 -0.40 -1.97 16 5 C 0.08 1.20 7.29 -39.47 -0.29 0.91 16 6 F -0.14 -2.02 17.26 2.25 0.04 -1.98 16 7 C -0.11 -1.78 8.94 -39.11 -0.35 -2.13 16 8 C -0.09 -1.53 5.75 -104.98 -0.60 -2.13 16 9 C 0.57 11.30 7.21 -12.32 -0.09 11.21 16 10 O -0.55 -11.83 15.32 5.31 0.08 -11.75 16 11 N -0.64 -12.85 3.63 -186.20 -0.68 -13.52 16 12 C 0.09 1.97 6.09 -8.38 -0.05 1.92 16 13 C 0.04 0.83 3.80 -91.12 -0.35 0.48 16 14 C -0.52 -12.96 8.82 -34.44 -0.30 -13.26 16 15 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 16 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 17 N -0.88 -23.91 13.26 55.43 0.74 -23.17 16 18 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 19 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 C 0.10 2.06 8.18 -8.51 -0.07 1.99 16 23 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.08 1.31 6.08 -51.93 -0.32 0.99 16 25 H 0.06 0.66 8.11 -51.93 -0.42 0.23 16 26 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 27 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.14 2.27 6.60 -52.48 -0.35 1.93 16 29 H 0.08 1.52 7.95 -51.93 -0.41 1.11 16 30 H 0.06 1.32 8.12 -51.93 -0.42 0.90 16 31 H 0.07 1.77 8.11 -51.93 -0.42 1.35 16 32 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 LS Contribution 298.04 15.07 4.49 4.49 Total: -1.00 -28.03 298.04 -7.62 -35.65 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -3.99 Total: 0.80 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -3.27 Total: -5.35 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.06 Total: -36.70 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.08 Total: -11.75 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.03 -7.62 -35.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598034871.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.963 kcal (2) G-P(sol) polarization free energy of solvation -28.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds