Wall clock time and date at job start Mon Mar 30 2020 06:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37990 * 120.04972 * 2 1 4 4 C 1.38305 * 120.17684 * 180.02562 * 3 2 1 5 5 C 1.38586 * 120.26464 * 0.29328 * 4 3 2 6 6 F 1.35100 * 119.95219 * 179.72884 * 5 4 3 7 7 C 1.38180 * 120.09240 * 359.44952 * 5 4 3 8 8 C 1.39554 * 119.82618 * 0.53051 * 7 5 4 9 9 C 1.47857 * 120.13235 * 179.76760 * 8 7 5 10 10 O 1.21560 * 119.99772 * 214.39681 * 9 8 7 11 11 N 1.34776 * 120.00133 * 34.40642 * 9 8 7 12 12 C 1.47065 * 136.05517 * 5.22804 * 11 9 8 13 13 C 1.53756 * 87.88457 * 152.96944 * 12 11 9 14 14 C 1.50709 * 114.08619 * 139.78081 * 13 12 11 15 15 H 1.07993 * 119.99584 * 266.56825 * 14 13 12 16 16 C 1.37876 * 119.99915 * 86.55836 * 14 13 12 17 17 N 1.31518 * 119.99803 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00038 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46933 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47089 * 120.00430 * 18 16 14 21 21 H 1.48497 * 109.47279 * 240.00576 * 18 16 14 22 22 C 1.47063 * 136.05847 * 185.61683 * 11 9 8 23 23 H 1.08997 * 109.46987 * 86.72921 * 1 2 3 24 24 H 1.09005 * 109.46794 * 206.72820 * 1 2 3 25 25 H 1.08998 * 109.46817 * 326.72572 * 1 2 3 26 26 H 1.07994 * 119.91061 * 0.02562 * 3 2 1 27 27 H 1.07994 * 119.86624 * 180.02562 * 4 3 2 28 28 H 1.08007 * 120.08564 * 180.25700 * 7 5 4 29 29 H 1.08998 * 113.47291 * 267.70201 * 12 11 9 30 30 H 1.09005 * 113.46580 * 38.14789 * 12 11 9 31 31 H 1.09001 * 114.57874 * 272.66671 * 13 12 11 32 32 H 0.96999 * 119.99300 * 179.97438 * 17 16 14 33 33 H 1.08999 * 113.46366 * 321.85489 * 22 11 9 34 34 H 1.08994 * 113.47340 * 92.29522 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1944 0.0000 4 6 3.5810 1.1975 -0.0005 5 6 4.2821 0.0021 -0.0072 6 9 5.6330 0.0125 -0.0132 7 6 3.6014 -1.2004 -0.0019 8 6 2.2059 -1.2080 -0.0010 9 6 1.4706 -2.4908 -0.0005 10 8 0.4143 -2.5861 -0.5945 11 7 1.9714 -3.5543 0.6588 12 6 3.1209 -3.8086 1.5401 13 6 2.3087 -4.9489 2.1758 14 6 3.1166 -6.1844 2.4795 15 1 3.1665 -6.9875 1.7593 16 6 3.7921 -6.2892 3.6769 17 7 3.7310 -5.3112 4.5541 18 14 4.7941 -7.8202 4.0531 19 1 4.7015 -8.7652 2.9114 20 1 6.2139 -7.4420 4.2684 21 1 4.2637 -8.4701 5.2785 22 6 1.6127 -4.9727 0.8079 23 1 -0.3633 0.0586 -1.0260 24 1 -0.3633 -0.9179 0.4622 25 1 -0.3633 0.8592 0.5638 26 1 1.6573 2.1293 0.0004 27 1 4.1167 2.1352 -0.0001 28 1 4.1479 -2.1320 -0.0029 29 1 4.0082 -4.1519 1.0082 30 1 3.3313 -2.9885 2.2266 31 1 1.6645 -4.6420 2.9998 32 1 4.2060 -5.3851 5.3966 33 1 0.5381 -5.1444 0.8705 34 1 2.1023 -5.6229 0.0829 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598034871.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:25 Heat of formation + Delta-G solvation = -38.767140 kcal Electronic energy + Delta-G solvation = -19288.466377 eV Core-core repulsion = 16101.244280 eV Total energy + Delta-G solvation = -3187.222097 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.96108 -41.59365 -39.93908 -38.50251 -34.70526 -33.42314 -32.82554 -30.70095 -27.93056 -26.98497 -26.76107 -24.87864 -22.83621 -22.07539 -20.29870 -18.89753 -18.46909 -17.92923 -17.24893 -16.82035 -16.63343 -16.56567 -16.24136 -16.06156 -15.27805 -14.84026 -14.60060 -14.32931 -14.10892 -14.02301 -13.32706 -13.27112 -12.96354 -12.86650 -12.78559 -12.70701 -12.52455 -12.47092 -12.17391 -11.41471 -11.10216 -10.80448 -10.56267 -10.21775 -9.71200 -9.52972 -8.18516 -6.30048 -0.29630 0.06070 1.45544 1.48954 1.59462 1.63119 1.88687 2.44969 2.52599 3.08153 3.11978 3.40058 3.66708 3.83181 3.92169 4.12363 4.22809 4.33067 4.45656 4.55591 4.65045 4.67545 4.75128 4.78317 4.86628 4.90019 4.93433 5.00474 5.07609 5.23884 5.43523 5.56431 5.76881 5.79034 6.19805 6.75979 6.79559 7.03465 7.40448 8.91806 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.022372 B = 0.005444 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.261460 B = 5141.805309 C = 5964.112313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.051 4.051 3 C -0.088 4.088 4 C -0.115 4.115 5 C 0.072 3.928 6 F -0.143 7.143 7 C -0.126 4.126 8 C -0.121 4.121 9 C 0.572 3.428 10 O -0.574 6.574 11 N -0.640 5.640 12 C 0.114 3.886 13 C 0.023 3.977 14 C -0.527 4.527 15 H 0.069 0.931 16 C 0.021 3.979 17 N -0.919 5.919 18 Si 0.960 3.040 19 H -0.262 1.262 20 H -0.281 1.281 21 H -0.283 1.283 22 C 0.108 3.892 23 H 0.082 0.918 24 H 0.048 0.952 25 H 0.097 0.903 26 H 0.182 0.818 27 H 0.175 0.825 28 H 0.130 0.870 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.040 0.960 32 H 0.265 0.735 33 H 0.061 0.939 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.216 13.111 -7.527 15.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.052 4.052 3 C -0.105 4.105 4 C -0.133 4.133 5 C 0.053 3.947 6 F -0.122 7.122 7 C -0.145 4.145 8 C -0.124 4.124 9 C 0.363 3.637 10 O -0.456 6.456 11 N -0.372 5.372 12 C -0.009 4.009 13 C 0.004 3.996 14 C -0.565 4.565 15 H 0.087 0.913 16 C -0.180 4.180 17 N -0.558 5.558 18 Si 0.785 3.215 19 H -0.186 1.186 20 H -0.207 1.207 21 H -0.209 1.209 22 C -0.014 4.014 23 H 0.101 0.899 24 H 0.067 0.933 25 H 0.116 0.884 26 H 0.199 0.801 27 H 0.193 0.807 28 H 0.148 0.852 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.739 13.274 -7.773 15.400 hybrid contribution 0.940 -1.139 0.456 1.545 sum 0.201 12.135 -7.317 14.172 Atomic orbital electron populations 1.20881 0.89262 1.03161 1.03501 1.20351 0.97748 0.91465 0.95645 1.21272 0.92922 0.98235 0.98073 1.21693 0.95158 0.97428 0.99028 1.17686 0.76973 0.94734 1.05341 1.91497 1.29051 1.97415 1.94202 1.21332 0.93666 0.98498 1.01052 1.19606 0.92959 0.93284 1.06533 1.18167 0.84593 0.83329 0.77568 1.90689 1.23775 1.84773 1.46404 1.49952 1.30311 1.09715 1.47249 1.23455 0.89759 0.98120 0.89539 1.20285 0.94018 0.94190 0.91106 1.21238 1.29721 1.02760 1.02738 0.91263 1.25786 0.97370 0.99053 0.95766 1.70076 1.43170 1.33705 1.08801 0.85477 0.78171 0.79592 0.78257 1.18638 1.20689 1.20875 1.23265 1.00169 0.79505 0.98467 0.89950 0.93339 0.88443 0.80062 0.80749 0.85247 0.89975 0.92863 0.94220 0.92641 0.92006 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.77 8.96 71.23 0.64 -2.13 16 2 C -0.05 -1.36 5.91 -19.61 -0.12 -1.48 16 3 C -0.09 -1.64 9.70 22.23 0.22 -1.43 16 4 C -0.11 -2.24 10.02 22.37 0.22 -2.01 16 5 C 0.07 1.92 7.29 22.34 0.16 2.08 16 6 F -0.14 -3.96 17.26 44.97 0.78 -3.18 16 7 C -0.13 -3.98 8.94 22.57 0.20 -3.77 16 8 C -0.12 -4.05 5.75 -20.09 -0.12 -4.17 16 9 C 0.57 23.03 7.21 86.79 0.63 23.65 16 10 O -0.57 -25.19 15.32 -3.90 -0.06 -25.25 16 11 N -0.64 -26.58 3.63 -861.29 -3.13 -29.71 16 12 C 0.11 4.88 6.09 83.26 0.51 5.39 16 13 C 0.02 1.11 3.80 -11.12 -0.04 1.07 16 14 C -0.53 -26.66 8.82 25.60 0.23 -26.43 16 15 H 0.07 3.37 7.81 -2.91 -0.02 3.35 16 16 C 0.02 1.06 5.46 84.65 0.46 1.52 16 17 N -0.92 -50.70 13.26 21.45 0.28 -50.41 16 18 Si 0.96 40.84 29.54 68.60 2.03 42.86 16 19 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 20 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 22 C 0.11 4.50 8.18 83.18 0.68 5.18 16 23 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.05 1.54 6.08 -2.38 -0.01 1.53 16 25 H 0.10 1.70 8.11 -2.39 -0.02 1.68 16 26 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 27 H 0.18 2.13 8.06 -2.91 -0.02 2.10 16 28 H 0.13 4.28 6.60 -2.91 -0.02 4.26 16 29 H 0.08 3.39 7.95 -2.39 -0.02 3.37 16 30 H 0.05 2.35 8.12 -2.38 -0.02 2.33 16 31 H 0.04 2.12 8.11 -2.39 -0.02 2.10 16 32 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 33 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.09 3.46 8.10 -2.39 -0.02 3.44 16 Total: -1.00 -61.80 298.04 4.68 -57.12 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 1.11 Total: 11.10 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 3.67 Total: -2.53 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -2.84 Total: -80.12 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.06 Total: -25.25 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.78 Total: -3.18 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.86 kcal Total: -61.80 4.68 -57.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598034871.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.353 kcal (2) G-P(sol) polarization free energy of solvation -61.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds