Wall clock time and date at job start Mon Mar 30 2020 06:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38342 * 119.86726 * 2 1 4 4 C 1.37944 * 120.17250 * 180.02562 * 3 2 1 5 5 C 1.39595 * 119.90720 * 0.02562 * 4 3 2 6 6 C 1.47855 * 120.12977 * 179.97438 * 5 4 3 7 7 O 1.21553 * 119.99373 * 173.29945 * 6 5 4 8 8 N 1.34770 * 120.00509 * 353.30363 * 6 5 4 9 9 C 1.47066 * 136.06083 * 174.41594 * 8 6 5 10 10 C 1.53499 * 87.98785 * 152.84521 * 9 8 6 11 11 C 1.50693 * 114.20992 * 139.65504 * 10 9 8 12 12 H 1.08005 * 119.99623 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00473 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99436 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00238 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47467 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47222 * 119.99816 * 15 13 11 18 18 H 1.48501 * 109.47130 * 239.99973 * 15 13 11 19 19 C 1.47071 * 136.05637 * 354.36574 * 8 6 5 20 20 C 1.39522 * 119.73556 * 0.28122 * 5 4 3 21 21 C 1.38223 * 119.82411 * 359.43973 * 20 5 4 22 22 F 1.35099 * 119.95039 * 180.27854 * 21 20 5 23 23 H 1.09002 * 109.46793 * 89.99471 * 1 2 3 24 24 H 1.08997 * 109.47126 * 209.99444 * 1 2 3 25 25 H 1.08995 * 109.46827 * 330.00093 * 1 2 3 26 26 H 1.08001 * 119.91201 * 0.02562 * 3 2 1 27 27 H 1.07999 * 120.04664 * 180.02562 * 4 3 2 28 28 H 1.08995 * 113.46883 * 267.62666 * 9 8 6 29 29 H 1.09001 * 113.46273 * 38.06322 * 9 8 6 30 30 H 1.09007 * 114.20288 * 272.48433 * 10 9 8 31 31 H 0.97008 * 119.99316 * 179.97438 * 14 13 11 32 32 H 1.08999 * 113.46859 * 321.93668 * 19 8 6 33 33 H 1.08999 * 113.46688 * 92.31676 * 19 8 6 34 34 H 1.08002 * 120.08911 * 179.72446 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1997 0.0000 4 6 3.5754 1.2070 -0.0005 5 6 4.2778 0.0007 -0.0016 6 6 5.7564 0.0028 -0.0028 7 8 6.3656 -1.0419 0.1191 8 7 6.4285 1.1630 -0.1389 9 6 7.8371 1.5829 -0.0889 10 6 7.4686 2.7417 -1.0257 11 6 8.1372 4.0485 -0.6849 12 1 8.8094 4.1073 0.1585 13 6 7.8903 5.1692 -1.4490 14 7 7.0714 5.0976 -2.4757 15 14 8.7197 6.7888 -1.0270 16 1 9.5886 6.6047 0.1631 17 1 9.5452 7.2367 -2.1773 18 1 7.6853 7.8125 -0.7316 19 6 6.0763 2.5661 -0.4036 20 6 3.5791 -1.2070 -0.0081 21 6 2.1969 -1.2015 -0.0017 22 9 1.5178 -2.3694 -0.0022 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5137 25 1 -0.3633 0.8900 0.5138 26 1 1.6523 2.1329 0.0004 27 1 4.1111 2.1447 -0.0001 28 1 8.1578 1.9096 0.9003 29 1 8.5209 0.8625 -0.5377 30 1 7.5191 2.4928 -2.0857 31 1 6.8974 5.8863 -3.0131 32 1 5.2631 2.6818 -1.1201 33 1 5.9270 3.1544 0.5017 34 1 4.1168 -2.1436 -0.0135 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598034954.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:02 Heat of formation + Delta-G solvation = -20.430164 kcal Electronic energy + Delta-G solvation = -19014.311722 eV Core-core repulsion = 15827.884776 eV Total energy + Delta-G solvation = -3186.426946 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.93708 -40.08808 -38.54396 -37.04820 -33.04769 -32.70996 -30.74994 -29.40933 -27.33842 -25.28798 -25.10686 -22.69904 -22.37752 -20.46436 -18.98949 -17.42676 -16.79889 -16.55373 -15.90285 -15.74237 -15.40598 -14.93663 -14.79353 -14.44872 -13.85321 -13.56668 -13.40273 -13.25642 -12.63988 -12.59049 -12.25535 -11.84471 -11.74705 -11.61840 -11.36798 -11.23307 -11.02271 -10.81039 -10.38355 -9.74561 -9.30100 -9.09207 -8.99548 -8.68163 -8.64114 -7.96688 -6.24905 -4.30833 0.76707 1.16479 2.98722 3.18794 3.28037 3.30718 3.38639 3.87835 4.19960 4.28610 4.55786 4.67694 4.86398 5.00134 5.06352 5.23038 5.38894 5.44007 5.56471 5.78131 5.89073 5.96114 6.01791 6.06661 6.18609 6.25611 6.29912 6.38256 6.41962 6.55746 6.70073 6.82994 7.48036 7.72959 8.10047 8.36381 8.62086 8.73972 9.36633 10.84782 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.029414 B = 0.004573 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.699175 B = 6121.203097 C = 6883.309594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.103 4.103 3 C -0.102 4.102 4 C -0.099 4.099 5 C -0.098 4.098 6 C 0.573 3.427 7 O -0.558 6.558 8 N -0.636 5.636 9 C 0.101 3.899 10 C 0.036 3.964 11 C -0.518 4.518 12 H 0.065 0.935 13 C 0.069 3.931 14 N -0.885 5.885 15 Si 0.896 3.104 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.283 1.283 19 C 0.089 3.911 20 C -0.096 4.096 21 C 0.082 3.918 22 F -0.138 7.138 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.138 0.862 27 H 0.152 0.848 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.264 0.736 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.302 -5.333 4.163 13.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.104 4.104 3 C -0.120 4.120 4 C -0.117 4.117 5 C -0.101 4.101 6 C 0.364 3.636 7 O -0.439 6.439 8 N -0.368 5.368 9 C -0.021 4.021 10 C 0.016 3.984 11 C -0.556 4.556 12 H 0.083 0.917 13 C -0.135 4.135 14 N -0.522 5.522 15 Si 0.723 3.277 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.209 1.209 19 C -0.033 4.033 20 C -0.116 4.116 21 C 0.063 3.937 22 F -0.117 7.117 23 H 0.094 0.906 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.156 0.844 27 H 0.170 0.830 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.190 -6.003 4.101 13.344 hybrid contribution 0.149 0.710 0.175 0.746 sum -11.041 -5.294 4.276 12.969 Atomic orbital electron populations 1.20764 0.90068 1.03375 1.02958 1.20118 0.97100 0.91993 1.01182 1.20927 0.93874 0.97147 1.00030 1.22131 0.94504 0.98997 0.96055 1.19838 0.93661 0.93223 1.03377 1.17655 0.86114 0.82651 0.77230 1.90717 1.69746 1.31015 1.52473 1.49860 1.11767 1.07422 1.67744 1.23398 0.81499 0.96205 1.00990 1.20371 0.90104 0.92461 0.95421 1.20939 1.27736 0.92841 1.14070 0.91663 1.25029 0.94715 0.99315 0.94413 1.69963 1.35013 1.29924 1.17269 0.86474 0.79431 0.83189 0.78585 1.19523 1.20837 1.20869 1.23819 1.02952 0.77019 0.99535 1.21182 0.91816 0.99576 0.99003 1.17320 0.89583 0.81091 1.05723 1.91472 1.79947 1.46126 1.94166 0.90573 0.91161 0.90746 0.84421 0.83021 0.90515 0.92142 0.91166 0.92609 0.91427 0.90285 0.83641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 9.83 36.01 0.35 -0.68 16 2 C -0.10 -1.25 5.89 -104.47 -0.62 -1.86 16 3 C -0.10 -1.24 9.68 -39.65 -0.38 -1.63 16 4 C -0.10 -1.45 9.14 -39.18 -0.36 -1.81 16 5 C -0.10 -1.66 5.87 -104.98 -0.62 -2.27 16 6 C 0.57 11.55 8.01 -12.33 -0.10 11.45 16 7 O -0.56 -12.70 17.15 5.32 0.09 -12.61 16 8 N -0.64 -12.74 3.67 -186.35 -0.68 -13.42 16 9 C 0.10 2.04 8.18 -8.51 -0.07 1.98 16 10 C 0.04 0.80 3.78 -91.26 -0.35 0.46 16 11 C -0.52 -12.67 8.82 -34.44 -0.30 -12.98 16 12 H 0.07 1.57 7.81 -52.48 -0.41 1.16 16 13 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -23.28 13.26 55.43 0.74 -22.54 16 15 Si 0.90 19.42 29.54 -169.99 -5.02 14.40 16 16 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 19 C 0.09 1.76 5.68 -8.51 -0.05 1.71 16 20 C -0.10 -1.50 9.57 -39.11 -0.37 -1.87 16 21 C 0.08 1.14 7.23 -39.47 -0.29 0.85 16 22 F -0.14 -1.88 16.46 2.25 0.04 -1.84 16 23 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.61 7.63 -51.93 -0.40 0.22 16 25 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 26 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 27 H 0.15 2.26 4.20 -52.49 -0.22 2.04 16 28 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.75 8.11 -51.93 -0.42 1.33 16 31 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 32 H 0.07 1.31 6.77 -51.93 -0.35 0.96 16 33 H 0.08 1.50 8.09 -51.93 -0.42 1.08 16 34 H 0.15 2.27 7.67 -52.49 -0.40 1.86 16 LS Contribution 297.64 15.07 4.49 4.49 Total: -1.00 -27.99 297.64 -7.46 -35.46 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -3.86 Total: 1.09 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -3.24 Total: -5.02 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.05 Total: -35.97 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.09 Total: -12.61 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.99 -7.46 -35.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598034954.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.028 kcal (2) G-P(sol) polarization free energy of solvation -27.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds