Wall clock time and date at job start Mon Mar 30 2020 06:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38342 * 119.86726 * 2 1 4 4 C 1.37944 * 120.17250 * 180.02562 * 3 2 1 5 5 C 1.39595 * 119.90720 * 0.02562 * 4 3 2 6 6 C 1.47855 * 120.12977 * 179.97438 * 5 4 3 7 7 O 1.21553 * 119.99373 * 173.29945 * 6 5 4 8 8 N 1.34770 * 120.00509 * 353.30363 * 6 5 4 9 9 C 1.47066 * 136.06083 * 174.41594 * 8 6 5 10 10 C 1.53499 * 87.98785 * 152.84521 * 9 8 6 11 11 C 1.50693 * 114.20992 * 139.65504 * 10 9 8 12 12 H 1.08005 * 119.99623 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00473 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99436 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00238 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47467 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47222 * 119.99816 * 15 13 11 18 18 H 1.48501 * 109.47130 * 239.99973 * 15 13 11 19 19 C 1.47071 * 136.05637 * 354.36574 * 8 6 5 20 20 C 1.39522 * 119.73556 * 0.28122 * 5 4 3 21 21 C 1.38223 * 119.82411 * 359.43973 * 20 5 4 22 22 F 1.35099 * 119.95039 * 180.27854 * 21 20 5 23 23 H 1.09002 * 109.46793 * 89.99471 * 1 2 3 24 24 H 1.08997 * 109.47126 * 209.99444 * 1 2 3 25 25 H 1.08995 * 109.46827 * 330.00093 * 1 2 3 26 26 H 1.08001 * 119.91201 * 0.02562 * 3 2 1 27 27 H 1.07999 * 120.04664 * 180.02562 * 4 3 2 28 28 H 1.08995 * 113.46883 * 267.62666 * 9 8 6 29 29 H 1.09001 * 113.46273 * 38.06322 * 9 8 6 30 30 H 1.09007 * 114.20288 * 272.48433 * 10 9 8 31 31 H 0.97008 * 119.99316 * 179.97438 * 14 13 11 32 32 H 1.08999 * 113.46859 * 321.93668 * 19 8 6 33 33 H 1.08999 * 113.46688 * 92.31676 * 19 8 6 34 34 H 1.08002 * 120.08911 * 179.72446 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1997 0.0000 4 6 3.5754 1.2070 -0.0005 5 6 4.2778 0.0007 -0.0016 6 6 5.7564 0.0028 -0.0028 7 8 6.3656 -1.0419 0.1191 8 7 6.4285 1.1630 -0.1389 9 6 7.8371 1.5829 -0.0889 10 6 7.4686 2.7417 -1.0257 11 6 8.1372 4.0485 -0.6849 12 1 8.8094 4.1073 0.1585 13 6 7.8903 5.1692 -1.4490 14 7 7.0714 5.0976 -2.4757 15 14 8.7197 6.7888 -1.0270 16 1 9.5886 6.6047 0.1631 17 1 9.5452 7.2367 -2.1773 18 1 7.6853 7.8125 -0.7316 19 6 6.0763 2.5661 -0.4036 20 6 3.5791 -1.2070 -0.0081 21 6 2.1969 -1.2015 -0.0017 22 9 1.5178 -2.3694 -0.0022 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5137 25 1 -0.3633 0.8900 0.5138 26 1 1.6523 2.1329 0.0004 27 1 4.1111 2.1447 -0.0001 28 1 8.1578 1.9096 0.9003 29 1 8.5209 0.8625 -0.5377 30 1 7.5191 2.4928 -2.0857 31 1 6.8974 5.8863 -3.0131 32 1 5.2631 2.6818 -1.1201 33 1 5.9270 3.1544 0.5017 34 1 4.1168 -2.1436 -0.0135 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598034954.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:02 Heat of formation + Delta-G solvation = -35.392005 kcal Electronic energy + Delta-G solvation = -19014.960516 eV Core-core repulsion = 15827.884776 eV Total energy + Delta-G solvation = -3187.075740 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.01581 -41.57135 -39.84880 -38.65353 -34.68723 -34.02204 -31.94461 -30.94092 -28.52888 -26.98729 -26.70007 -23.85746 -23.61088 -21.99420 -20.47286 -18.94439 -18.49547 -17.81419 -17.19777 -16.84967 -16.76892 -16.55421 -16.18589 -16.07727 -15.18693 -14.81410 -14.39802 -14.25737 -14.19015 -14.08949 -13.38584 -13.28382 -13.20620 -12.88249 -12.81480 -12.70943 -12.55414 -12.28660 -12.11972 -11.45705 -11.04688 -10.84832 -10.50424 -10.10306 -9.82753 -9.56636 -8.15472 -6.26473 -0.40555 0.05973 1.48294 1.52732 1.62433 1.64547 1.84399 2.47700 2.59581 3.06609 3.14884 3.38406 3.63050 3.77372 3.96283 4.12368 4.19223 4.35762 4.39237 4.55990 4.60069 4.69096 4.75911 4.77471 4.84880 4.92334 4.99764 5.09065 5.14318 5.21090 5.25127 5.59978 5.74427 5.82392 6.22947 6.76253 6.82641 7.02188 7.43821 8.94727 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.029414 B = 0.004573 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.699175 B = 6121.203097 C = 6883.309594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.087 4.087 3 C -0.092 4.092 4 C -0.100 4.100 5 C -0.123 4.123 6 C 0.569 3.431 7 O -0.594 6.594 8 N -0.638 5.638 9 C 0.105 3.895 10 C 0.022 3.978 11 C -0.526 4.526 12 H 0.068 0.932 13 C 0.025 3.975 14 N -0.917 5.917 15 Si 0.957 3.043 16 H -0.265 1.265 17 H -0.286 1.286 18 H -0.278 1.278 19 C 0.107 3.893 20 C -0.105 4.105 21 C 0.075 3.925 22 F -0.137 7.137 23 H 0.090 0.910 24 H 0.072 0.928 25 H 0.099 0.901 26 H 0.175 0.825 27 H 0.150 0.850 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.039 0.961 31 H 0.265 0.735 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.293 -4.138 5.008 14.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.088 4.088 3 C -0.110 4.110 4 C -0.118 4.118 5 C -0.126 4.126 6 C 0.361 3.639 7 O -0.478 6.478 8 N -0.369 5.369 9 C -0.017 4.017 10 C 0.003 3.997 11 C -0.564 4.564 12 H 0.086 0.914 13 C -0.176 4.176 14 N -0.555 5.555 15 Si 0.783 3.217 16 H -0.189 1.189 17 H -0.212 1.212 18 H -0.204 1.204 19 C -0.015 4.015 20 C -0.125 4.125 21 C 0.056 3.944 22 F -0.116 7.116 23 H 0.108 0.892 24 H 0.091 0.909 25 H 0.118 0.882 26 H 0.193 0.807 27 H 0.167 0.833 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.186 -4.808 4.957 14.884 hybrid contribution 0.715 0.274 -0.106 0.773 sum -12.470 -4.534 4.851 14.128 Atomic orbital electron populations 1.20903 0.87235 1.04821 1.04233 1.20546 0.99034 0.90969 0.98295 1.21298 0.92725 0.98707 0.98255 1.22154 0.95785 0.97812 0.96040 1.19604 0.91624 0.94705 1.06689 1.18205 0.87599 0.81872 0.76192 1.90681 1.70878 1.32032 1.54201 1.49847 1.11557 1.07666 1.67856 1.23329 0.82004 0.95274 1.01100 1.20251 0.92469 0.92770 0.94196 1.21210 1.27667 0.93525 1.14037 0.91368 1.25718 0.95275 1.02287 0.94324 1.70064 1.36425 1.30742 1.18293 0.85511 0.78468 0.79500 0.78197 1.18870 1.21234 1.20408 1.23597 1.01201 0.76868 0.99785 1.21132 0.92834 0.98821 0.99742 1.17399 0.88969 0.81959 1.06046 1.91475 1.79678 1.46241 1.94182 0.89163 0.90874 0.88247 0.80749 0.83307 0.89063 0.92497 0.94293 0.92596 0.91085 0.88925 0.84734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.58 9.83 71.24 0.70 -0.88 16 2 C -0.09 -1.84 5.89 -19.76 -0.12 -1.96 16 3 C -0.09 -1.94 9.68 22.22 0.22 -1.73 16 4 C -0.10 -2.78 9.14 22.53 0.21 -2.58 16 5 C -0.12 -4.17 5.87 -20.09 -0.12 -4.28 16 6 C 0.57 23.41 8.01 86.79 0.69 24.10 16 7 O -0.59 -27.94 17.15 -3.88 -0.07 -28.01 16 8 N -0.64 -25.80 3.67 -861.75 -3.16 -28.96 16 9 C 0.10 4.30 8.18 83.18 0.68 4.98 16 10 C 0.02 1.03 3.78 -11.21 -0.04 0.99 16 11 C -0.53 -25.67 8.82 25.60 0.23 -25.44 16 12 H 0.07 3.22 7.81 -2.91 -0.02 3.20 16 13 C 0.02 1.22 5.46 84.65 0.46 1.68 16 14 N -0.92 -48.39 13.26 21.45 0.28 -48.11 16 15 Si 0.96 39.37 29.54 68.60 2.03 41.39 16 16 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 17 H -0.29 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 19 C 0.11 4.22 5.68 83.18 0.47 4.69 16 20 C -0.11 -3.30 9.57 22.58 0.22 -3.08 16 21 C 0.08 1.98 7.23 22.34 0.16 2.15 16 22 F -0.14 -3.53 16.46 44.97 0.74 -2.78 16 23 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.07 1.00 7.63 -2.39 -0.02 0.99 16 25 H 0.10 0.92 8.08 -2.39 -0.02 0.90 16 26 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 27 H 0.15 4.21 4.20 -2.91 -0.01 4.20 16 28 H 0.09 3.46 8.10 -2.39 -0.02 3.45 16 29 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.04 2.01 8.11 -2.38 -0.02 1.99 16 31 H 0.27 13.29 8.31 -92.70 -0.77 12.51 16 32 H 0.07 2.74 6.77 -2.39 -0.02 2.72 16 33 H 0.09 3.40 8.09 -2.39 -0.02 3.38 16 34 H 0.13 4.39 7.67 -2.91 -0.02 4.36 16 Total: -1.00 -60.52 297.64 4.70 -55.82 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 1.12 Total: 12.01 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 3.76 Total: -1.36 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: -2.88 Total: -77.07 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.07 Total: -28.01 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.74 Total: -2.78 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.39 kcal Total: -60.52 4.70 -55.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598034954.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.425 kcal (2) G-P(sol) polarization free energy of solvation -60.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds